Literature DB >> 21754757

3-Allyl-1-{[3-(4-nitro-phen-yl)-4,5-dihydro-1,3-oxazol-5-yl]meth-yl}-1H-anthra[1,2-d]imidazole-2,6,11(3H)-trione.

Zahra Afrakssou, Amal Haoudi, Frédéric Capet, Christian Rolando, Lahcen El Ammari.   

Abstract

The mol-ecular structure of the title compound, C(28)H(20)N(4)O(6), consists of three fused six-membered rings (A,B,C) and one five-membered ring (D). The latter is linked to an isoxazole ring (E) via a methyl-ene unit. A 4-nitro-phenyl substituent (F) is attached to the isoxazole. The fused five and six-membered rings (C,D) are almost coplanar with an r.m.s. deviation of 0.0345 Å and make a dihedral angle of 9.40 (8)° with ring A. The isoxazole and 4-nitro-phenyl rings (E,F) are also almost coplanar with the imidazole and the fused adjacent ring (C,D), forming a dihedral angle of 11.4 (6)°. The crystal packing displays inter-molecular C-H⋯O hydrogen bonding. An intra-molecular C-H⋯O inter-action also occurs.

Entities:  

Year:  2011        PMID: 21754757      PMCID: PMC3120525          DOI: 10.1107/S1600536811016606

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of anthraquinone derivatives, see: Agarwal et al. (2000 ▶); Barnard et al. (1995 ▶); Chen et al. (2007 ▶); Haug et al. (2003 ▶); Iizuka et al. (2004 ▶); Koyamaa et al. (2002 ▶); Su et al. (2005 ▶); Wu et al. (2005 ▶); Yen et al. (2000 ▶). For a derivative of the title compound, see: Afrakssou et al. (2010 ▶). For the use of related compounds as synthetic dyes, see: Simi et al. (1995 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C28H20N4O6 M = 508.48 Monoclinic, a = 10.0780 (3) Å b = 22.7094 (6) Å c = 11.2729 (3) Å β = 113.809 (1)° V = 2360.41 (11) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.40 × 0.14 × 0.11 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS, Bruker, 2009) ▶ T min = 0.704, T max = 0.745 47772 measured reflections 4828 independent reflections 2998 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.111 S = 1.00 4828 reflections 343 parameters H-atom parameters constrained Δρmax = 0.12 e Å−3 Δρmin = −0.15 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT-Plus (Bruker, 2009 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811016606/im2283sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811016606/im2283Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811016606/im2283Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C28H20N4O6F(000) = 1056
Mr = 508.48Dx = 1.431 Mg m3
Monoclinic, P21/nMelting point: 471 K
Hall symbol: -P 2ynMo Kα radiation, λ = 0.71073 Å
a = 10.0780 (3) ÅCell parameters from 7395 reflections
b = 22.7094 (6) Åθ = 2.4–21.5°
c = 11.2729 (3) ŵ = 0.10 mm1
β = 113.809 (1)°T = 296 K
V = 2360.41 (11) Å3Prism, yellow
Z = 40.40 × 0.14 × 0.11 mm
Bruker APEXII CCD diffractometer4828 independent reflections
Radiation source: fine-focus sealed tube2998 reflections with I > 2σ(I)
graphiteRint = 0.048
φ and ω scansθmax = 26.4°, θmin = 2.5°
Absorption correction: multi-scan (SADABS, Bruker, 2009)h = −12→12
Tmin = 0.704, Tmax = 0.745k = −28→28
47772 measured reflectionsl = −12→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.111H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0455P)2 + 0.4447P] where P = (Fo2 + 2Fc2)/3
4828 reflections(Δ/σ)max = 0.001
343 parametersΔρmax = 0.12 e Å3
0 restraintsΔρmin = −0.15 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.6321 (2)0.82375 (9)0.19097 (19)0.0612 (5)
C20.85135 (19)0.84194 (8)0.35084 (17)0.0552 (4)
C30.81023 (17)0.89317 (8)0.27367 (15)0.0502 (4)
C40.90411 (17)0.94182 (7)0.30538 (15)0.0475 (4)
C51.04177 (18)0.93398 (7)0.40936 (15)0.0505 (4)
C61.0776 (2)0.88249 (8)0.48157 (16)0.0593 (5)
H61.16830.87940.54980.071*
C70.9829 (2)0.83582 (8)0.45530 (17)0.0622 (5)
H71.00640.80180.50550.075*
C81.1555 (2)0.97997 (8)0.44241 (17)0.0574 (4)
C91.1231 (2)1.03401 (8)0.36364 (17)0.0556 (4)
C100.98508 (19)1.04342 (7)0.26723 (16)0.0527 (4)
C110.86591 (19)1.00068 (8)0.24546 (16)0.0524 (4)
C121.2303 (2)1.07627 (9)0.3858 (2)0.0712 (5)
H121.32241.07030.45050.085*
C131.2012 (3)1.12668 (10)0.3127 (2)0.0793 (6)
H131.27301.15500.32920.095*
C141.0663 (3)1.13554 (9)0.2151 (2)0.0754 (6)
H141.04821.16920.16410.090*
C150.9574 (2)1.09440 (8)0.19255 (19)0.0651 (5)
H150.86581.10080.12750.078*
C160.59135 (18)0.91052 (8)0.05248 (16)0.0576 (5)
H16A0.59820.95270.06690.069*
H16B0.49000.89950.02260.069*
C170.64489 (18)0.89559 (9)−0.05152 (17)0.0588 (5)
H170.62230.8546−0.07970.071*
C180.58172 (18)0.93738 (8)−0.16582 (17)0.0617 (5)
H18A0.56280.9177−0.24740.074*
H18B0.49350.9560−0.16950.074*
C190.70447 (18)0.98060 (8)−0.13153 (16)0.0553 (4)
C200.69973 (18)1.03873 (8)−0.18912 (16)0.0546 (4)
C210.5711 (2)1.06028 (9)−0.28290 (18)0.0640 (5)
H210.48821.0370−0.31200.077*
C220.5655 (2)1.11605 (9)−0.33315 (19)0.0701 (5)
H220.47921.1305−0.39550.084*
C230.6886 (2)1.15008 (8)−0.2904 (2)0.0662 (5)
C240.8184 (2)1.12962 (10)−0.1991 (2)0.0727 (6)
H240.90111.1530−0.17180.087*
C250.8234 (2)1.07410 (9)−0.14903 (19)0.0655 (5)
H250.91061.0599−0.08750.079*
C260.7429 (2)0.74050 (9)0.3414 (2)0.0749 (6)
H26A0.64420.72700.31760.090*
H26B0.79230.73850.43510.090*
C270.8169 (2)0.70030 (9)0.2829 (2)0.0776 (6)
H270.82220.66080.30620.093*
C280.8743 (3)0.71473 (12)0.2031 (3)0.0922 (7)
H28A0.87180.75370.17680.111*
H28B0.91820.68620.17200.111*
N10.67395 (14)0.88059 (7)0.17487 (13)0.0554 (4)
N20.73969 (16)0.80148 (7)0.30080 (15)0.0633 (4)
N30.82302 (15)0.96221 (7)−0.04143 (14)0.0606 (4)
N40.6801 (3)1.20974 (9)−0.3438 (2)0.0907 (6)
O10.52115 (15)0.79872 (6)0.12021 (14)0.0768 (4)
O20.73990 (14)1.01619 (6)0.18463 (13)0.0677 (4)
O31.27476 (15)0.97262 (6)0.53085 (13)0.0835 (4)
O40.80057 (12)0.90603 (6)0.00001 (12)0.0663 (4)
O50.5638 (2)1.22624 (8)−0.4262 (2)0.1111 (6)
O60.7864 (2)1.24061 (9)−0.3026 (3)0.1445 (9)
U11U22U33U12U13U23
C10.0496 (11)0.0657 (13)0.0690 (12)−0.0039 (10)0.0245 (10)−0.0025 (10)
C20.0513 (11)0.0581 (11)0.0572 (10)−0.0025 (9)0.0231 (9)−0.0016 (8)
C30.0439 (10)0.0582 (11)0.0491 (9)0.0041 (8)0.0193 (8)−0.0003 (8)
C40.0464 (10)0.0516 (10)0.0463 (9)0.0034 (8)0.0204 (8)−0.0033 (7)
C50.0488 (10)0.0559 (10)0.0464 (9)0.0008 (8)0.0188 (8)−0.0058 (8)
C60.0528 (11)0.0668 (12)0.0495 (9)0.0057 (9)0.0115 (8)0.0018 (9)
C70.0623 (12)0.0614 (12)0.0578 (11)0.0031 (10)0.0190 (9)0.0077 (9)
C80.0540 (11)0.0654 (12)0.0470 (9)−0.0015 (9)0.0145 (9)−0.0099 (8)
C90.0584 (11)0.0547 (11)0.0557 (10)−0.0037 (9)0.0251 (9)−0.0144 (8)
C100.0584 (11)0.0489 (10)0.0569 (10)0.0057 (8)0.0294 (9)−0.0085 (8)
C110.0495 (11)0.0581 (11)0.0513 (9)0.0077 (9)0.0219 (8)−0.0055 (8)
C120.0700 (13)0.0670 (13)0.0737 (13)−0.0131 (11)0.0258 (11)−0.0153 (10)
C130.0819 (16)0.0621 (14)0.1010 (17)−0.0139 (12)0.0444 (14)−0.0140 (12)
C140.0913 (17)0.0502 (11)0.0998 (16)0.0048 (11)0.0543 (14)0.0004 (11)
C150.0718 (13)0.0559 (11)0.0748 (12)0.0107 (10)0.0371 (11)−0.0013 (9)
C160.0391 (9)0.0674 (11)0.0611 (11)0.0029 (8)0.0147 (8)0.0008 (9)
C170.0413 (10)0.0693 (12)0.0606 (10)0.0026 (9)0.0151 (8)−0.0027 (9)
C180.0412 (10)0.0799 (13)0.0575 (10)0.0015 (9)0.0131 (8)−0.0025 (9)
C190.0377 (10)0.0742 (12)0.0508 (9)0.0038 (9)0.0147 (8)−0.0049 (9)
C200.0420 (10)0.0692 (12)0.0507 (9)0.0026 (8)0.0168 (8)−0.0098 (8)
C210.0500 (11)0.0681 (13)0.0609 (11)−0.0024 (9)0.0090 (9)−0.0084 (9)
C220.0600 (13)0.0716 (13)0.0649 (12)0.0062 (11)0.0109 (10)−0.0085 (10)
C230.0684 (14)0.0582 (12)0.0739 (12)0.0016 (10)0.0309 (11)−0.0113 (10)
C240.0553 (13)0.0743 (14)0.0889 (14)−0.0077 (11)0.0293 (11)−0.0138 (12)
C250.0417 (10)0.0818 (14)0.0683 (12)−0.0003 (10)0.0174 (9)−0.0063 (10)
C260.0668 (13)0.0692 (13)0.0855 (14)−0.0114 (11)0.0273 (11)0.0125 (11)
C270.0647 (14)0.0634 (13)0.0915 (16)−0.0019 (11)0.0179 (12)0.0047 (11)
C280.0823 (16)0.0928 (17)0.1015 (18)−0.0009 (14)0.0369 (15)−0.0112 (14)
N10.0402 (8)0.0646 (10)0.0581 (8)−0.0012 (7)0.0164 (7)0.0008 (7)
N20.0554 (10)0.0604 (10)0.0703 (10)−0.0051 (8)0.0216 (8)0.0070 (8)
N30.0408 (8)0.0796 (11)0.0598 (9)0.0054 (8)0.0188 (7)0.0010 (8)
N40.0901 (16)0.0661 (13)0.1166 (17)0.0044 (12)0.0426 (14)−0.0096 (12)
O10.0551 (8)0.0801 (10)0.0868 (9)−0.0157 (7)0.0197 (7)−0.0064 (7)
O20.0528 (8)0.0662 (8)0.0803 (9)0.0133 (6)0.0230 (7)0.0037 (6)
O30.0639 (9)0.0907 (11)0.0692 (8)−0.0144 (8)−0.0008 (7)0.0015 (7)
O40.0420 (7)0.0861 (10)0.0672 (8)0.0113 (6)0.0182 (6)0.0102 (7)
O50.1209 (16)0.0787 (12)0.1199 (14)0.0141 (11)0.0344 (13)0.0101 (10)
O60.1056 (16)0.0775 (12)0.233 (3)−0.0174 (11)0.0507 (16)0.0068 (14)
C1—O11.221 (2)C16—H16B0.9700
C1—N21.371 (2)C17—O41.456 (2)
C1—N11.392 (2)C17—C181.518 (2)
C2—C71.379 (2)C17—H170.9800
C2—N21.384 (2)C18—C191.502 (2)
C2—C31.411 (2)C18—H18A0.9700
C3—C41.404 (2)C18—H18B0.9700
C3—N11.405 (2)C19—N31.286 (2)
C4—C51.420 (2)C19—C201.463 (3)
C4—C111.477 (2)C20—C211.390 (2)
C5—C61.387 (2)C20—C251.396 (2)
C5—C81.483 (2)C21—C221.379 (3)
C6—C71.376 (2)C21—H210.9300
C6—H60.9300C22—C231.373 (3)
C7—H70.9300C22—H220.9300
C8—O31.224 (2)C23—C241.378 (3)
C8—C91.472 (3)C23—N41.471 (3)
C9—C121.390 (3)C24—C251.374 (3)
C9—C101.393 (2)C24—H240.9300
C10—C151.392 (2)C25—H250.9300
C10—C111.486 (2)C26—N21.455 (2)
C11—O21.2264 (19)C26—C271.490 (3)
C12—C131.371 (3)C26—H26A0.9700
C12—H120.9300C26—H26B0.9700
C13—C141.375 (3)C27—C281.294 (3)
C13—H130.9300C27—H270.9300
C14—C151.384 (3)C28—H28A0.9300
C14—H140.9300C28—H28B0.9300
C15—H150.9300N3—O41.408 (2)
C16—N11.460 (2)N4—O61.206 (3)
C16—C171.514 (2)N4—O51.224 (2)
C16—H16A0.9700
O1—C1—N2126.88 (18)O4—C17—H17110.8
O1—C1—N1126.32 (18)C16—C17—H17110.8
N2—C1—N1106.80 (16)C18—C17—H17110.8
C7—C2—N2128.61 (17)C19—C18—C1799.82 (14)
C7—C2—C3123.44 (17)C19—C18—H18A111.8
N2—C2—C3107.93 (15)C17—C18—H18A111.8
C4—C3—N1134.81 (15)C19—C18—H18B111.8
C4—C3—C2119.47 (15)C17—C18—H18B111.8
N1—C3—C2105.71 (15)H18A—C18—H18B109.5
C3—C4—C5116.42 (15)N3—C19—C20119.80 (16)
C3—C4—C11124.85 (15)N3—C19—C18113.39 (16)
C5—C4—C11118.57 (15)C20—C19—C18126.82 (15)
C6—C5—C4121.74 (16)C21—C20—C25118.73 (18)
C6—C5—C8117.06 (16)C21—C20—C19120.55 (17)
C4—C5—C8121.17 (15)C25—C20—C19120.70 (16)
C7—C6—C5121.98 (16)C22—C21—C20120.41 (18)
C7—C6—H6119.0C22—C21—H21119.8
C5—C6—H6119.0C20—C21—H21119.8
C6—C7—C2116.76 (17)C23—C22—C21119.46 (19)
C6—C7—H7121.6C23—C22—H22120.3
C2—C7—H7121.6C21—C22—H22120.3
O3—C8—C9120.70 (17)C22—C23—C24121.52 (19)
O3—C8—C5120.92 (17)C22—C23—N4118.7 (2)
C9—C8—C5118.36 (16)C24—C23—N4119.8 (2)
C12—C9—C10119.54 (18)C25—C24—C23118.87 (19)
C12—C9—C8120.01 (17)C25—C24—H24120.6
C10—C9—C8120.45 (16)C23—C24—H24120.6
C15—C10—C9119.50 (17)C24—C25—C20120.99 (18)
C15—C10—C11119.50 (17)C24—C25—H25119.5
C9—C10—C11120.97 (16)C20—C25—H25119.5
O2—C11—C4122.39 (16)N2—C26—C27113.34 (18)
O2—C11—C10119.36 (16)N2—C26—H26A108.9
C4—C11—C10118.15 (15)C27—C26—H26A108.9
C13—C12—C9120.4 (2)N2—C26—H26B108.9
C13—C12—H12119.8C27—C26—H26B108.9
C9—C12—H12119.8H26A—C26—H26B107.7
C12—C13—C14120.4 (2)C28—C27—C26126.6 (2)
C12—C13—H13119.8C28—C27—H27116.7
C14—C13—H13119.8C26—C27—H27116.7
C13—C14—C15120.2 (2)C27—C28—H28A120.0
C13—C14—H14119.9C27—C28—H28B120.0
C15—C14—H14119.9H28A—C28—H28B120.0
C14—C15—C10120.0 (2)C1—N1—C3109.62 (14)
C14—C15—H15120.0C1—N1—C16117.89 (14)
C10—C15—H15120.0C3—N1—C16131.04 (15)
N1—C16—C17112.46 (14)C1—N2—C2109.85 (15)
N1—C16—H16A109.1C1—N2—C26122.97 (16)
C17—C16—H16A109.1C2—N2—C26126.32 (16)
N1—C16—H16B109.1C19—N3—O4109.50 (14)
C17—C16—H16B109.1O6—N4—O5123.0 (2)
H16A—C16—H16B107.8O6—N4—C23118.8 (2)
O4—C17—C16108.55 (14)O5—N4—C23118.2 (2)
O4—C17—C18104.60 (14)N3—O4—C17107.87 (12)
C16—C17—C18111.04 (15)
D—H···AD—HH···AD···AD—H···A
C7—H7···O1i0.932.603.516 (2)169
C18—H18B···O2ii0.972.373.333 (2)170
C26—H26B···O1i0.972.553.379 (3)144
C16—H16A···O20.972.102.902 (2)141
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C7—H7⋯O1i0.932.603.516 (2)169
C18—H18B⋯O2ii0.972.373.333 (2)170
C26—H26B⋯O1i0.972.553.379 (3)144
C16—H16A⋯O20.972.102.902 (2)141

Symmetry codes: (i) ; (ii) .

  10 in total

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4.  A short history of SHELX.

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5.  Clastogenicity of anthraquinones in V79 and in three derived cell lines expressing P450 enzymes.

Authors:  S Simi; S Morelli; P G Gervasi; G Rainaldi
Journal:  Mutat Res       Date:  1995-08       Impact factor: 2.433

6.  Chemopreventive effects of emodin and cassiamin B in mouse skin carcinogenesis.

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Journal:  Cancer Lett       Date:  2002-08-28       Impact factor: 8.679

7.  Emodin induces apoptosis in human lung adenocarcinoma cells through a reactive oxygen species-dependent mitochondrial signaling pathway.

Authors:  Yu-Ting Su; Huei-Ling Chang; Song-Kun Shyue; Shih-Lan Hsu
Journal:  Biochem Pharmacol       Date:  2005-07-15       Impact factor: 5.858

8.  Anti-human cytomegalovirus activity and toxicity of sulfonated anthraquinones and anthraquinone derivatives.

Authors:  D L Barnard; D W Fairbairn; K L O'Neill; T L Gage; R W Sidwell
Journal:  Antiviral Res       Date:  1995-12       Impact factor: 5.970

9.  Activation of human telomerase reverse transcriptase expression by some new symmetrical bis-substituted derivatives of the anthraquinone.

Authors:  Hsu-Shan Huang; Jeng-Fong Chiou; Yaou Fong; Ching-Cheng Hou; Yu-Cheng Lu; Jen-Yi Wang; Jing-Wen Shih; Yen-Ru Pan; Jing-Jer Lin
Journal:  J Med Chem       Date:  2003-07-17       Impact factor: 7.446

10.  1,3-Diallyl-1H-anthra[1,2-d]imidazole-2,6,11(3H)-trione.

Authors:  Zahra Afrakssou; Youssef Kandri Rodi; Hafid Zouihri; El Mokhtar Essassi; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-26
  10 in total
  2 in total

1.  Crystal structure of (E)-2-benzyl-idene-4-[(3-phenyl-4,5-di-hydro-isoxazol-5-yl)meth-yl]-2H-benzo[b][1,4]thia-zin-3(4H)-one.

Authors:  Nada Kheira Sebbar; Mohamed Ellouz; El Mokhtar Essassi; Mohamed Saadi; Lahcen El Ammari
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-05-23

2.  1-(Prop-2-en-1-yl)-3-{[3-(pyridin-4-yl)-4,5-di-hydro-isoxazol-5-yl]meth-yl}-1H-anthra[1,2-d]imidazole-2,6,11(3H)-trione.

Authors:  Zahra Afrakssou; Youssef Kandri Rodia; Frédéric Capet; El Mokhtar Essassi; Christian Rolando; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-05-22
  2 in total

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