Literature DB >> 21754679

Diaqua-bis-[5-(2-pyridyl-meth-yl)tetra-zol-ato-κN,N]zinc(II).

Yang Liu1, Ya-Ling Li, Xiu-Guang Wang, En-Cui Yang.   

Abstract

In the title mononuclear complex, [Zn(C(7)n class="Species">H(6)N(5))(2)(H(2)O)(2)], the Zn(II) atom, located on an inversion centre, is in a distorted octa-hedral coordination geometry formed by four N atoms from two chelating 5-(2-pyridyl-meth-yl)tetra-zolate ligands and two O donors from two water mol-ecules. Inter-molecular O-H⋯N hydrogen bonds between the coordinated water mol-ecule and the tetra-zolyl group of the 5-(2-pyridyl-meth-yl)tetra-zolate ligand lead to the formation of a three-dimensional network.

Entities:  

Year:  2011        PMID: 21754679      PMCID: PMC3120314          DOI: 10.1107/S1600536811019507

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For metal-organic frameworks with tetra­zolate ligands and their applications in magnetism, fluorescence and gas storage, see: Yang et al. (2011 ▶); Feng et al. (2010 ▶); Zhao et al. (2008 ▶); Panda et al. (2011 ▶). For metal complexes with in situ-generated 5-(2-pyridyl­meth­yl)-tetra­zolate ligands, see: Xu et al. (2009 ▶); Wang (2008 ▶).

Experimental

Crystal data

[Zn(C7H6N5)2(H2O)2] M = 421.74 Monoclinic, a = 6.6695 (4) Å b = 13.8949 (8) Å c = 10.8718 (5) Å β = 127.055 (2)° V = 804.05 (8) Å3 Z = 2 Mo Kα radiation μ = 1.57 mm−1 T = 173 K 0.20 × 0.10 × 0.08 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.745, T max = 0.885 3929 measured reflections 1388 independent reflections 1335 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.022 wR(F 2) = 0.053 S = 1.05 1388 reflections 124 parameters H-atom parameters constrained Δρmax = 0.62 e Å−3 Δρmin = −0.30 e Å−3 Data collection: APEX2 (Bruker, 2003 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAIn class="Chemical">NT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and DIAMOND (Brandenburg & Berndt, 1999 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811019507/bt5553sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811019507/bt5553Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C7H6N5)2(H2O)2]F(000) = 432
Mr = 421.74Dx = 1.742 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 6.6695 (4) ÅCell parameters from 3869 reflections
b = 13.8949 (8) Åθ = 2.8–28.4°
c = 10.8718 (5) ŵ = 1.57 mm1
β = 127.055 (2)°T = 173 K
V = 804.05 (8) Å3Block, pale yellow
Z = 20.20 × 0.10 × 0.08 mm
Bruker APEXII CCD diffractometer1388 independent reflections
Radiation source: fine-focus sealed tube1335 reflections with I > 2σ(I)
graphiteRint = 0.030
φ and ω scansθmax = 25.0°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −7→7
Tmin = 0.745, Tmax = 0.885k = −16→11
3929 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.022Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.053H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0146P)2 + 0.7405P] where P = (Fo2 + 2Fc2)/3
1388 reflections(Δ/σ)max < 0.001
124 parametersΔρmax = 0.62 e Å3
0 restraintsΔρmin = −0.30 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.50001.00000.00000.01318 (11)
O10.6481 (2)0.90283 (9)−0.08811 (14)0.0196 (3)
H1A0.58090.8510−0.13820.024*
H1B0.79950.9131−0.05320.024*
N10.4006 (3)0.88555 (10)0.07937 (16)0.0144 (3)
N20.1830 (3)0.86762 (11)0.05983 (17)0.0164 (3)
N30.2217 (3)0.79864 (11)0.15370 (17)0.0185 (3)
N40.4661 (3)0.77039 (11)0.23846 (16)0.0161 (3)
N50.8595 (3)0.99858 (9)0.22729 (17)0.0135 (3)
C10.5681 (3)0.82608 (12)0.18945 (19)0.0140 (4)
C20.8406 (3)0.82446 (13)0.2548 (2)0.0166 (4)
H2A0.85530.80470.17300.020*
H2B0.92890.77590.33810.020*
C30.9670 (3)0.92064 (13)0.3181 (2)0.0146 (4)
C40.9710 (3)1.08445 (13)0.2853 (2)0.0159 (4)
H40.89521.13980.22180.019*
C51.1913 (3)1.09628 (14)0.4334 (2)0.0189 (4)
H51.26411.15820.47040.023*
C61.3018 (3)1.01590 (14)0.5256 (2)0.0196 (4)
H61.45241.02160.62760.023*
C71.1908 (3)0.92742 (14)0.4676 (2)0.0175 (4)
H71.26590.87120.52890.021*
U11U22U33U12U13U23
Zn10.01153 (16)0.01131 (17)0.01161 (16)−0.00133 (10)0.00427 (13)0.00173 (10)
O10.0142 (6)0.0174 (7)0.0229 (6)−0.0019 (5)0.0089 (5)−0.0076 (6)
N10.0128 (7)0.0135 (7)0.0140 (7)−0.0012 (6)0.0066 (6)0.0001 (6)
N20.0138 (7)0.0160 (8)0.0174 (7)−0.0018 (6)0.0083 (6)−0.0003 (7)
N30.0160 (7)0.0183 (8)0.0189 (7)−0.0012 (6)0.0093 (6)0.0004 (7)
N40.0150 (7)0.0145 (7)0.0169 (7)−0.0003 (6)0.0086 (6)0.0018 (6)
N50.0127 (7)0.0136 (8)0.0141 (7)0.0005 (5)0.0080 (6)0.0011 (5)
C10.0160 (8)0.0104 (8)0.0143 (8)−0.0005 (7)0.0085 (7)−0.0020 (7)
C20.0153 (8)0.0139 (9)0.0189 (9)0.0028 (7)0.0094 (7)0.0029 (8)
C30.0141 (8)0.0176 (9)0.0164 (8)0.0020 (7)0.0115 (7)0.0019 (8)
C40.0166 (8)0.0159 (9)0.0146 (8)−0.0015 (7)0.0092 (7)0.0008 (8)
C50.0180 (9)0.0212 (10)0.0169 (9)−0.0049 (8)0.0102 (8)−0.0038 (8)
C60.0127 (8)0.0298 (10)0.0151 (9)0.0001 (8)0.0078 (7)−0.0005 (8)
C70.0145 (8)0.0214 (10)0.0172 (9)0.0051 (7)0.0100 (7)0.0058 (8)
Zn1—N1i2.0983 (14)N5—C31.345 (2)
Zn1—N12.0984 (14)C1—C21.501 (2)
Zn1—N52.1714 (15)C2—C31.507 (2)
Zn1—N5i2.1714 (15)C2—H2A0.9900
Zn1—O12.2039 (12)C2—H2B0.9900
Zn1—O1i2.2039 (12)C3—C71.399 (2)
O1—H1A0.8501C4—C51.388 (2)
O1—H1B0.8500C4—H40.9500
N1—C11.324 (2)C5—C61.380 (3)
N1—N21.3572 (19)C5—H50.9500
N2—N31.307 (2)C6—C71.376 (3)
N3—N41.360 (2)C6—H60.9500
N4—C11.335 (2)C7—H70.9500
N5—C41.345 (2)
N1i—Zn1—N1180.00 (7)C3—N5—Zn1125.26 (11)
N1i—Zn1—N593.96 (5)N1—C1—N4111.52 (15)
N1—Zn1—N586.04 (5)N1—C1—C2123.99 (15)
N1i—Zn1—N5i86.04 (5)N4—C1—C2124.45 (15)
N1—Zn1—N5i93.96 (5)C1—C2—C3112.78 (14)
N5—Zn1—N5i180.0C1—C2—H2A109.0
N1i—Zn1—O187.13 (5)C3—C2—H2A109.0
N1—Zn1—O192.87 (5)C1—C2—H2B109.0
N5—Zn1—O190.71 (5)C3—C2—H2B109.0
N5i—Zn1—O189.29 (5)H2A—C2—H2B107.8
N1i—Zn1—O1i92.87 (5)N5—C3—C7121.50 (16)
N1—Zn1—O1i87.13 (5)N5—C3—C2118.36 (15)
N5—Zn1—O1i89.29 (5)C7—C3—C2120.14 (16)
N5i—Zn1—O1i90.71 (5)N5—C4—C5123.28 (17)
O1—Zn1—O1i180.00 (6)N5—C4—H4118.4
Zn1—O1—H1A126.6C5—C4—H4118.4
Zn1—O1—H1B115.2C6—C5—C4118.38 (17)
H1A—O1—H1B117.0C6—C5—H5120.8
C1—N1—N2105.52 (13)C4—C5—H5120.8
C1—N1—Zn1122.75 (11)C7—C6—C5119.06 (17)
N2—N1—Zn1130.38 (11)C7—C6—H6120.5
N3—N2—N1108.81 (13)C5—C6—H6120.5
N2—N3—N4109.47 (13)C6—C7—C3119.69 (17)
C1—N4—N3104.66 (14)C6—C7—H7120.2
C4—N5—C3118.08 (15)C3—C7—H7120.2
C4—N5—Zn1116.42 (11)
N1i—Zn1—N1—C1−100 (10)O1i—Zn1—N5—C3116.31 (13)
N5—Zn1—N1—C1−26.79 (13)N2—N1—C1—N41.07 (19)
N5i—Zn1—N1—C1153.21 (13)Zn1—N1—C1—N4169.09 (11)
O1—Zn1—N1—C163.72 (13)N2—N1—C1—C2−176.72 (15)
O1i—Zn1—N1—C1−116.28 (13)Zn1—N1—C1—C2−8.7 (2)
N1i—Zn1—N1—N265 (10)N3—N4—C1—N1−0.63 (19)
N5—Zn1—N1—N2137.97 (14)N3—N4—C1—C2177.15 (15)
N5i—Zn1—N1—N2−42.03 (14)N1—C1—C2—C356.5 (2)
O1—Zn1—N1—N2−131.52 (14)N4—C1—C2—C3−121.02 (18)
O1i—Zn1—N1—N248.48 (14)C4—N5—C3—C7−1.2 (2)
C1—N1—N2—N3−1.10 (18)Zn1—N5—C3—C7−175.34 (12)
Zn1—N1—N2—N3−167.85 (11)C4—N5—C3—C2178.95 (15)
N1—N2—N3—N40.75 (18)Zn1—N5—C3—C24.8 (2)
N2—N3—N4—C1−0.09 (18)C1—C2—C3—N5−51.8 (2)
N1i—Zn1—N5—C434.93 (13)C1—C2—C3—C7128.33 (16)
N1—Zn1—N5—C4−145.07 (13)C3—N5—C4—C50.3 (2)
N5i—Zn1—N5—C485.1 (7)Zn1—N5—C4—C5174.98 (13)
O1—Zn1—N5—C4122.11 (12)N5—C4—C5—C60.2 (3)
O1i—Zn1—N5—C4−57.89 (12)C4—C5—C6—C70.2 (3)
N1i—Zn1—N5—C3−150.86 (13)C5—C6—C7—C3−1.0 (3)
N1—Zn1—N5—C329.14 (13)N5—C3—C7—C61.6 (2)
N5i—Zn1—N5—C3−100.7 (7)C2—C3—C7—C6−178.58 (16)
O1—Zn1—N5—C3−63.69 (13)
D—H···AD—HH···AD···AD—H···A
O1—H1A···N4ii0.852.002.8395 (19)171
O1—H1B···N2iii0.852.162.9386 (18)152
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯N4i0.852.002.8395 (19)171
O1—H1B⋯N2ii0.852.162.9386 (18)152

Symmetry codes: (i) ; (ii) .

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Authors:  Tamas Panda; Pradip Pachfule; Yifei Chen; Jianwen Jiang; Rahul Banerjee
Journal:  Chem Commun (Camb)       Date:  2010-12-21       Impact factor: 6.222

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Diaqua-bis[5-(2-pyridylmeth-yl)tetra-zolato-κN,N]manganese(II).

Authors:  Wei Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-05

Review 4.  In situ hydrothermal synthesis of tetrazole coordination polymers with interesting physical properties.

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