Literature DB >> 21203093

Diaqua-bis[5-(2-pyridylmeth-yl)tetra-zolato-κN,N]manganese(II).

Wei Wang1.   

Abstract

The title complex, [Mn(C(7)H(6)N(5))(2)(H(2)O)(2)], was obtained by the in situ hydro-thermal reaction of MnCl(2) with 2-(2-pyrid-yl)acetonitrile in the presence of NaN(3). The Mn(II) atom, which is located on an inversion centre, has a distorted octa-hedral coordination geometry formed by two water mol-ecules and two chelating ligands. Inter-molecular hydrogen bonds and π-π inter-actions (3.452 Å) stabilize the crystal structure and lead to the formation of a three-dimensional network.

Entities:  

Year:  2008        PMID: 21203093      PMCID: PMC2961924          DOI: 10.1107/S1600536808019272

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Demko & Sharpless (2001 ▶); Zhao et al. (2008 ▶). For the synthesis of similar complexes, see: Hu et al. (2007 ▶); Liu & Fan (2007 ▶).

Experimental

Crystal data

[Mn(C7H6N5)2(H2O)2] M = 411.31 Monoclinic, a = 6.638 (2) Å b = 13.788 (5) Å c = 8.771 (3) Å β = 90.01 (5)° V = 802.9 (4) Å3 Z = 2 Mo Kα radiation μ = 0.86 mm−1 T = 293 (2) K 0.20 × 0.12 × 0.12 mm

Data collection

Rigaku Mercury2 diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.802, T max = 1.000 (expected range = 0.723–0.902) 8070 measured reflections 1836 independent reflections 1550 reflections with I > 2σ(I) R int = 0.057

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.172 S = 1.13 1836 reflections 124 parameters H-atom parameters constrained Δρmax = 0.39 e Å−3 Δρmin = −0.73 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808019272/hg2418sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808019272/hg2418Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Mn(C7H6N5)2(H2O)2]F000 = 422
Mr = 411.31Dx = 1.701 Mg m3
Monoclinic, P21/nMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2050 reflections
a = 6.639 (2) Åθ = 2.8–27.5º
b = 13.788 (5) ŵ = 0.86 mm1
c = 8.771 (3) ÅT = 293 (2) K
β = 90.01 (5)ºPrism, colorless
V = 802.9 (4) Å30.20 × 0.12 × 0.12 mm
Z = 2
Rigaku Mercury2) diffractometer1836 independent reflections
Radiation source: fine-focus sealed tube1550 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.057
Detector resolution: 13.6612 pixels mm-1θmax = 27.5º
T = 293(2) Kθmin = 3.0º
CCD_Profile_fitting scansh = −8→8
Absorption correction: multi-scan(CrystalClear; Rigaku, 2005)k = −17→17
Tmin = 0.802, Tmax = 1.000l = −11→11
8070 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.058H-atom parameters constrained
wR(F2) = 0.173  w = 1/[σ2(Fo2) + (0.0834P)2 + 0.8368P] where P = (Fo2 + 2Fc2)/3
S = 1.13(Δ/σ)max < 0.001
1836 reflectionsΔρmax = 0.39 e Å3
124 parametersΔρmin = −0.73 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Mn10.00001.00001.00000.0261 (3)
N50.4367 (4)0.7962 (2)0.8387 (3)0.0354 (7)
O10.2353 (4)1.10029 (18)0.9172 (3)0.0382 (6)
H1B0.32411.11640.99970.057*
H1C0.17301.15830.87920.057*
N30.1879 (4)0.88112 (19)0.9162 (3)0.0299 (6)
C70.1284 (5)0.8238 (2)0.8048 (4)0.0275 (7)
N20.3843 (4)0.8625 (2)0.9339 (3)0.0346 (7)
N40.2778 (4)0.7701 (2)0.7545 (3)0.0332 (6)
C6−0.0793 (5)0.8223 (2)0.7415 (4)0.0317 (7)
H6A−0.17200.80280.82140.038*
H6B−0.08600.77380.66140.038*
C5−0.1465 (5)0.9175 (2)0.6782 (4)0.0289 (7)
C4−0.2173 (5)0.9233 (3)0.5316 (4)0.0359 (8)
H4A−0.22620.86770.47200.043*
C3−0.2743 (6)1.0105 (3)0.4737 (4)0.0371 (8)
H3A−0.32021.01550.37380.045*
C2−0.2628 (6)1.0907 (3)0.5649 (4)0.0377 (8)
H2A−0.30221.15130.52900.045*
C1−0.1925 (5)1.0797 (2)0.7089 (4)0.0340 (8)
H1A−0.18321.13450.77040.041*
N1−0.1363 (4)0.99533 (17)0.7671 (3)0.0273 (6)
U11U22U33U12U13U23
Mn10.0329 (4)0.0185 (4)0.0270 (4)0.0025 (2)−0.0001 (3)−0.0016 (2)
N50.0353 (15)0.0297 (15)0.0413 (16)0.0058 (12)−0.0018 (12)−0.0047 (12)
O10.0381 (13)0.0326 (13)0.0439 (14)−0.0103 (10)−0.0061 (11)0.0116 (11)
N30.0341 (15)0.0230 (13)0.0326 (14)0.0049 (11)−0.0004 (11)−0.0030 (11)
C70.0324 (16)0.0155 (13)0.0345 (16)0.0003 (11)0.0025 (13)−0.0007 (12)
N20.0328 (15)0.0265 (14)0.0446 (16)0.0041 (11)−0.0027 (12)−0.0019 (12)
N40.0371 (15)0.0253 (13)0.0371 (16)0.0054 (11)−0.0003 (12)−0.0037 (12)
C60.0339 (17)0.0217 (15)0.0395 (17)−0.0018 (12)−0.0022 (14)−0.0058 (13)
C50.0271 (15)0.0245 (15)0.0349 (17)−0.0007 (12)−0.0006 (13)−0.0032 (13)
C40.0334 (17)0.0372 (19)0.0373 (18)0.0010 (14)−0.0045 (14)−0.0081 (15)
C30.0299 (18)0.051 (2)0.0303 (17)−0.0013 (14)−0.0013 (14)0.0029 (15)
C20.0399 (19)0.0357 (18)0.0376 (18)0.0039 (15)−0.0015 (15)0.0079 (15)
C10.0417 (19)0.0246 (16)0.0357 (17)0.0038 (13)0.0001 (14)0.0003 (13)
N10.0289 (14)0.0239 (14)0.0291 (14)0.0009 (9)0.0012 (11)0.0003 (10)
Mn1—N32.187 (5)C6—H6A0.9700
Mn1—O12.209 (5)C6—H6B0.9700
Mn1—N12.235 (3)C5—N11.328 (5)
N5—N21.286 (5)C5—C41.371 (6)
N5—N41.337 (5)C4—C31.359 (6)
O1—H1B0.9600C4—H4A0.9300
O1—H1C0.9600C3—C21.367 (6)
N3—C71.317 (5)C3—H3A0.9300
N3—N21.338 (6)C2—C11.355 (6)
C7—N41.314 (5)C2—H2A0.9300
C7—C61.487 (6)C1—N11.324 (5)
C6—C51.494 (6)C1—H1A0.9300
N3—Mn1—O187.43 (11)C7—C6—H6B108.8
N3i—Mn1—O192.57 (5)C5—C6—H6B108.8
N3—Mn1—N184.39 (17)H6A—C6—H6B107.7
N3i—Mn1—N195.61 (17)N1—C5—C4121.4 (3)
O1i—Mn1—N189.79 (18)N1—C5—C6118.5 (4)
O1—Mn1—N190.21 (18)C4—C5—C6120.1 (3)
N2—N5—N4109.6 (3)C3—C4—C5119.9 (3)
Mn1—O1—H1B109.3C3—C4—H4A120.1
Mn1—O1—H1C109.3C5—C4—H4A120.1
H1B—O1—H1C109.5C4—C3—C2118.8 (4)
C7—N3—N2105.3 (3)C4—C3—H3A120.6
C7—N3—Mn1121.9 (3)C2—C3—H3A120.6
N2—N3—Mn1131.4 (2)C1—C2—C3118.3 (4)
N3—C7—N4111.1 (3)C1—C2—H2A120.9
N3—C7—C6124.3 (3)C3—C2—H2A120.9
N4—C7—C6124.5 (3)N1—C1—C2123.7 (3)
N5—N2—N3109.0 (3)N1—C1—H1A118.2
C7—N4—N5105.0 (3)C2—C1—H1A118.2
C7—C6—C5113.8 (3)C1—N1—C5118.0 (4)
C7—C6—H6A108.8C1—N1—Mn1116.2 (2)
C5—C6—H6A108.8C5—N1—Mn1125.5 (2)
O1i—Mn1—N3—C764.4 (3)C7—C6—C5—C4125.9 (3)
O1—Mn1—N3—C7−115.6 (3)N1—C5—C4—C31.5 (5)
N1—Mn1—N3—C7−25.2 (3)C6—C5—C4—C3−178.6 (3)
O1i—Mn1—N3—N2−131.9 (3)C5—C4—C3—C2−1.1 (6)
O1—Mn1—N3—N248.1 (3)C4—C3—C2—C10.8 (6)
N1—Mn1—N3—N2138.5 (3)C3—C2—C1—N1−0.8 (6)
N1i—Mn1—N3—N2−41.5 (3)C2—C1—N1—C51.1 (5)
N2—N3—C7—N40.8 (4)C2—C1—N1—Mn1174.6 (3)
Mn1—N3—C7—N4168.2 (2)C4—C5—N1—C1−1.5 (5)
N2—N3—C7—C6−177.6 (3)C6—C5—N1—C1178.7 (3)
Mn1—N3—C7—C6−10.2 (4)C4—C5—N1—Mn1−174.3 (2)
N4—N5—N2—N30.7 (4)C6—C5—N1—Mn15.9 (4)
C7—N3—N2—N5−0.9 (4)N3—Mn1—N1—C1−145.1 (3)
Mn1—N3—N2—N5−166.6 (2)N3i—Mn1—N1—C134.9 (3)
N3—C7—N4—N5−0.3 (4)O1i—Mn1—N1—C1122.3 (3)
C6—C7—N4—N5178.0 (3)O1—Mn1—N1—C1−57.7 (3)
N2—N5—N4—C7−0.3 (4)N3—Mn1—N1—C527.8 (3)
N3—C7—C6—C559.0 (5)N3i—Mn1—N1—C5−152.2 (3)
N4—C7—C6—C5−119.2 (4)O1i—Mn1—N1—C5−64.8 (3)
C7—C6—C5—N1−54.2 (4)O1—Mn1—N1—C5115.2 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1B···N2ii0.962.042.889 (8)146
O1—H1B···N5ii0.962.453.371 (8)162
O1—H1C···N4iii0.961.962.786 (8)142
C6—H6A···N5iv0.972.603.343 (5)133
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1B⋯N2i0.962.042.889 (8)146
O1—H1B⋯N5i0.962.453.371 (8)162
O1—H1C⋯N4ii0.961.962.786 (8)142
C6—H6A⋯N5iii0.972.603.343 (5)133

Symmetry codes: (i) ; (ii) ; (iii) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Preparation of 5-substituted 1H-tetrazoles from nitriles in water.

Authors:  Z P Demko; K B Sharpless
Journal:  J Org Chem       Date:  2001-11-30       Impact factor: 4.354

Review 3.  In situ hydrothermal synthesis of tetrazole coordination polymers with interesting physical properties.

Authors:  Hong Zhao; Zhi-Rong Qu; Heng-Yun Ye; Ren-Gen Xiong
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  3 in total
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1.  Diaqua-bis-[5-(2-pyridyl-meth-yl)tetra-zol-ato-κN,N]zinc(II).

Authors:  Yang Liu; Ya-Ling Li; Xiu-Guang Wang; En-Cui Yang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-28
  1 in total

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