Literature DB >> 21754662

Bis(2-methyl-benzoato-κO,O')(1,10'-phenanthroline-κN,N')copper(II).

Sheng-Liang Ni1, Feng Zhou, Jin-Li Qi.   

Abstract

In the title compound, [Cu(C(8)H(7)O(2))(2)(C(12)H(8)N(2))], the Cu(II) atom assumes a distorted octa-hedral coordination geometry, chelated by two N atoms from the 1,10'-phenanthroline ligand and four O atoms from two 2-methyl-benzoate anions. A significant Jahn-Teller distortion is observed with two axial Cu-O distances significantly longer than those in the equatorial CuO(2)N(2) plane. In the crystal, π-π stacking inter-actions, with centroid-centroid distances of 3.547 (3) or 3.728 (3) Å between the phenanthroline rings, form layers parallel to (011).

Entities:  

Year:  2011        PMID: 21754662      PMCID: PMC3120328          DOI: 10.1107/S1600536811018162

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For Jahn–Teller distortions in copper complexes, see: Yang & Vittal (2003 ▶); Su et al. (2005 ▶); Liu et al. (2010 ▶). For phenanthroline complexes, see: Wang et al. (1996 ▶); Wall et al. (1999 ▶); Naing et al. (1995 ▶). For related structures, see: Cano et al. (1997 ▶); Rodrigues et al. (1999 ▶) Xu & Xu (2004 ▶).

Experimental

Crystal data

[Cu(C8H7O2)2(C12H8N2)] M = 514.02 Monoclinic, a = 16.245 (3) Å b = 10.136 (2) Å c = 14.048 (3) Å β = 99.15 (3)° V = 2283.7 (8) Å3 Z = 4 Mo Kα radiation μ = 1.00 mm−1 T = 293 K 0.15 × 0.10 × 0.10 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.866, T max = 0.900 17441 measured reflections 4021 independent reflections 2509 reflections with I > 2σ(I) R int = 0.063

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.150 S = 1.13 4021 reflections 319 parameters H-atom parameters constrained Δρmax = 0.74 e Å−3 Δρmin = −1.04 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811018162/sj5144sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811018162/sj5144Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C8H7O2)2(C12H8N2)]F(000) = 1060
Mr = 514.02Dx = 1.495 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 16.245 (3) Åθ = 3.0–25.0°
b = 10.136 (2) ŵ = 1.00 mm1
c = 14.048 (3) ÅT = 293 K
β = 99.15 (3)°Plate, blue
V = 2283.7 (8) Å30.15 × 0.10 × 0.10 mm
Z = 4
Rigaku R-AXIS RAPID diffractometer4021 independent reflections
Radiation source: fine-focus sealed tube2509 reflections with I > 2σ(I)
graphiteRint = 0.063
ω scansθmax = 25.0°, θmin = 3.0°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −19→19
Tmin = 0.866, Tmax = 0.900k = −12→12
17441 measured reflectionsl = −16→16
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045H-atom parameters constrained
wR(F2) = 0.150w = 1/[σ2(Fo2) + (0.0447P)2 + 4.7675P] where P = (Fo2 + 2Fc2)/3
S = 1.13(Δ/σ)max < 0.001
4021 reflectionsΔρmax = 0.74 e Å3
319 parametersΔρmin = −1.04 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0013 (5)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu−0.33221 (4)0.96309 (7)−0.17022 (4)0.0480 (2)
O1−0.2996 (2)1.1433 (4)−0.1871 (3)0.0703 (12)
O2−0.2404 (2)1.1033 (4)−0.0382 (3)0.0606 (10)
O3−0.2325 (2)0.8925 (4)−0.2077 (3)0.0635 (11)
O4−0.3140 (2)0.8977 (4)−0.3495 (3)0.0609 (10)
N1−0.3735 (2)0.7809 (4)−0.1419 (3)0.0450 (10)
N2−0.4462 (2)1.0137 (4)−0.1442 (3)0.0423 (9)
C1−0.3348 (4)0.6641 (6)−0.1404 (4)0.0584 (15)
H1−0.27940.6613−0.14960.070*
C2−0.3756 (5)0.5461 (6)−0.1255 (4)0.0698 (17)
H2−0.34710.4665−0.12510.084*
C3−0.4558 (4)0.5468 (6)−0.1115 (4)0.0607 (15)
H3−0.48250.4678−0.10240.073*
C4−0.4990 (3)0.6670 (5)−0.1108 (3)0.0478 (13)
C5−0.5834 (3)0.6805 (6)−0.0943 (4)0.0587 (15)
H5−0.61410.6053−0.08540.070*
C6−0.6191 (3)0.7998 (7)−0.0914 (4)0.0588 (15)
H6−0.67340.8055−0.07850.071*
C7−0.5753 (3)0.9185 (6)−0.1076 (3)0.0482 (13)
C8−0.6084 (4)1.0457 (6)−0.1077 (4)0.0606 (16)
H8−0.66271.0579−0.09620.073*
C9−0.5615 (4)1.1519 (6)−0.1244 (4)0.0623 (16)
H9−0.58331.2366−0.12350.075*
C10−0.4806 (4)1.1328 (5)−0.1431 (4)0.0565 (14)
H10−0.44941.2061−0.15520.068*
C11−0.4933 (3)0.9076 (5)−0.1268 (3)0.0395 (11)
C12−0.4540 (3)0.7812 (5)−0.1262 (3)0.0406 (11)
C13−0.2490 (3)1.1732 (5)−0.1108 (4)0.0476 (12)
C14−0.2009 (3)1.3008 (5)−0.1152 (3)0.0416 (11)
C15−0.2043 (3)1.3578 (5)−0.2067 (4)0.0509 (13)
H15−0.23481.3161−0.25990.061*
C16−0.1637 (3)1.4737 (6)−0.2196 (4)0.0619 (15)
H16−0.16601.5092−0.28110.074*
C17−0.1197 (4)1.5370 (6)−0.1411 (5)0.0667 (16)
H17−0.09281.6163−0.14900.080*
C18−0.1157 (3)1.4830 (6)−0.0517 (5)0.0604 (15)
H18−0.08591.52720.00080.072*
C19−0.1545 (3)1.3636 (5)−0.0356 (4)0.0496 (13)
C20−0.1458 (4)1.3130 (7)0.0666 (4)0.080 (2)
H20A−0.13271.22060.06760.120*
H20B−0.19731.32620.09070.120*
H20C−0.10191.36000.10630.120*
C21−0.2458 (3)0.8741 (5)−0.2988 (4)0.0494 (13)
C22−0.1747 (3)0.8162 (5)−0.3429 (3)0.0425 (11)
C23−0.1959 (3)0.7396 (5)−0.4251 (3)0.0531 (14)
H23−0.25170.7325−0.45270.064*
C24−0.1363 (4)0.6736 (6)−0.4669 (4)0.0615 (15)
H24−0.15170.6217−0.52140.074*
C25−0.0538 (4)0.6861 (6)−0.4265 (4)0.0612 (15)
H25−0.01300.6410−0.45280.073*
C26−0.0319 (3)0.7651 (6)−0.3470 (4)0.0555 (14)
H260.02430.7750−0.32200.067*
C27−0.0903 (3)0.8306 (5)−0.3028 (3)0.0430 (12)
C28−0.0598 (3)0.9171 (6)−0.2164 (4)0.0629 (16)
H18A−0.09090.9981−0.22150.094*
H28B−0.00170.9361−0.21440.094*
H28C−0.06760.8720−0.15840.094*
U11U22U33U12U13U23
Cu0.0409 (4)0.0540 (4)0.0480 (4)−0.0059 (3)0.0037 (3)0.0006 (3)
O10.067 (2)0.074 (3)0.063 (2)−0.024 (2)−0.011 (2)0.009 (2)
O20.075 (3)0.049 (2)0.057 (2)−0.006 (2)0.0108 (19)0.0059 (19)
O30.049 (2)0.094 (3)0.048 (2)−0.005 (2)0.0121 (17)0.000 (2)
O40.045 (2)0.060 (2)0.074 (3)−0.0035 (18)−0.0034 (18)0.005 (2)
N10.040 (2)0.053 (3)0.041 (2)0.010 (2)0.0046 (17)−0.003 (2)
N20.051 (2)0.035 (2)0.039 (2)0.0028 (19)0.0003 (18)0.0003 (18)
C10.059 (3)0.059 (4)0.056 (3)0.022 (3)0.005 (3)−0.002 (3)
C20.105 (5)0.041 (3)0.065 (4)0.018 (4)0.019 (4)0.004 (3)
C30.091 (5)0.044 (3)0.050 (3)−0.007 (3)0.019 (3)−0.001 (3)
C40.056 (3)0.047 (3)0.039 (3)−0.009 (3)0.001 (2)−0.003 (2)
C50.054 (3)0.075 (4)0.047 (3)−0.027 (3)0.005 (3)−0.001 (3)
C60.041 (3)0.084 (5)0.050 (3)−0.007 (3)0.004 (2)−0.007 (3)
C70.040 (3)0.062 (4)0.039 (3)0.006 (3)−0.002 (2)−0.005 (2)
C80.050 (3)0.078 (4)0.050 (3)0.025 (3)−0.002 (2)−0.009 (3)
C90.070 (4)0.059 (4)0.053 (3)0.031 (3)−0.004 (3)−0.009 (3)
C100.081 (4)0.040 (3)0.044 (3)0.006 (3)−0.004 (3)0.003 (2)
C110.039 (3)0.044 (3)0.033 (2)0.002 (2)−0.003 (2)−0.002 (2)
C120.041 (3)0.042 (3)0.035 (2)0.005 (2)−0.003 (2)−0.005 (2)
C130.041 (3)0.042 (3)0.061 (3)0.001 (2)0.013 (3)0.000 (3)
C140.036 (2)0.039 (3)0.050 (3)0.000 (2)0.007 (2)−0.001 (2)
C150.043 (3)0.054 (3)0.056 (3)−0.003 (2)0.006 (2)0.005 (3)
C160.057 (3)0.061 (4)0.071 (4)0.003 (3)0.021 (3)0.021 (3)
C170.060 (4)0.047 (3)0.096 (5)−0.006 (3)0.023 (3)0.000 (4)
C180.049 (3)0.053 (4)0.079 (4)−0.007 (3)0.008 (3)−0.018 (3)
C190.046 (3)0.053 (3)0.051 (3)−0.005 (3)0.011 (2)−0.006 (3)
C200.086 (5)0.098 (5)0.053 (4)−0.023 (4)0.002 (3)−0.003 (3)
C210.039 (3)0.053 (3)0.057 (3)−0.013 (2)0.007 (2)0.006 (3)
C220.044 (3)0.042 (3)0.043 (3)−0.005 (2)0.009 (2)0.007 (2)
C230.058 (3)0.056 (3)0.043 (3)−0.015 (3)0.002 (2)0.003 (3)
C240.088 (4)0.050 (3)0.049 (3)−0.014 (3)0.017 (3)−0.007 (3)
C250.070 (4)0.054 (4)0.063 (4)0.006 (3)0.022 (3)0.000 (3)
C260.051 (3)0.062 (4)0.053 (3)−0.001 (3)0.007 (3)0.002 (3)
C270.042 (3)0.041 (3)0.045 (3)−0.002 (2)0.007 (2)0.005 (2)
C280.048 (3)0.079 (4)0.061 (3)−0.014 (3)0.003 (3)−0.013 (3)
Cu—O31.919 (4)C11—C121.431 (6)
Cu—O11.927 (4)C13—C141.518 (7)
Cu—N22.010 (4)C14—C191.399 (7)
Cu—N12.025 (4)C14—C151.402 (7)
O1—C131.279 (6)C15—C161.374 (7)
O2—C131.230 (6)C15—H150.9300
O3—C211.277 (6)C16—C171.374 (8)
O4—C211.240 (6)C16—H160.9300
N1—C11.339 (6)C17—C181.362 (8)
N1—C121.361 (6)C17—H170.9300
N2—C101.332 (6)C18—C191.399 (7)
N2—C111.364 (6)C18—H180.9300
C1—C21.399 (8)C19—C201.510 (7)
C1—H10.9300C20—H20A0.9600
C2—C31.348 (8)C20—H20B0.9600
C2—H20.9300C20—H20C0.9600
C3—C41.406 (7)C21—C221.515 (7)
C3—H30.9300C22—C231.388 (7)
C4—C121.404 (7)C22—C271.404 (6)
C4—C51.434 (7)C23—C241.382 (8)
C5—C61.345 (8)C23—H230.9300
C5—H50.9300C24—C251.375 (8)
C6—C71.435 (8)C24—H240.9300
C6—H60.9300C25—C261.374 (7)
C7—C81.398 (7)C25—H250.9300
C7—C111.404 (7)C26—C271.383 (7)
C8—C91.360 (8)C26—H260.9300
C8—H80.9300C27—C281.516 (7)
C9—C101.393 (8)C28—H18A0.9600
C9—H90.9300C28—H28B0.9600
C10—H100.9300C28—H28C0.9600
O3—Cu—O193.39 (18)O1—C13—C14115.7 (5)
O3—Cu—N2170.71 (16)C19—C14—C15118.9 (5)
O1—Cu—N293.45 (17)C19—C14—C13124.8 (4)
O3—Cu—N191.94 (17)C15—C14—C13116.3 (4)
O1—Cu—N1173.96 (17)C16—C15—C14121.6 (5)
N2—Cu—N181.58 (15)C16—C15—H15119.2
C13—O1—Cu105.9 (3)C14—C15—H15119.2
C21—O3—Cu108.2 (3)C15—C16—C17119.5 (5)
C1—N1—C12117.4 (5)C15—C16—H16120.3
C1—N1—Cu129.8 (4)C17—C16—H16120.3
C12—N1—Cu112.7 (3)C18—C17—C16119.7 (6)
C10—N2—C11117.7 (4)C18—C17—H17120.2
C10—N2—Cu129.3 (4)C16—C17—H17120.2
C11—N2—Cu113.0 (3)C17—C18—C19122.7 (5)
N1—C1—C2121.7 (5)C17—C18—H18118.7
N1—C1—H1119.1C19—C18—H18118.7
C2—C1—H1119.1C14—C19—C18117.6 (5)
C3—C2—C1120.6 (6)C14—C19—C20124.2 (5)
C3—C2—H2119.7C18—C19—C20118.1 (5)
C1—C2—H2119.7C19—C20—H20A109.5
C2—C3—C4120.0 (5)C19—C20—H20B109.5
C2—C3—H3120.0H20A—C20—H20B109.5
C4—C3—H3120.0C19—C20—H20C109.5
C12—C4—C3116.2 (5)H20A—C20—H20C109.5
C12—C4—C5118.7 (5)H20B—C20—H20C109.5
C3—C4—C5125.1 (5)O4—C21—O3122.7 (5)
C6—C5—C4121.3 (5)O4—C21—C22120.6 (5)
C6—C5—H5119.4O3—C21—C22116.6 (4)
C4—C5—H5119.4C23—C22—C27119.3 (5)
C5—C6—C7121.4 (5)C23—C22—C21116.9 (4)
C5—C6—H6119.3C27—C22—C21123.7 (4)
C7—C6—H6119.3C24—C23—C22121.7 (5)
C8—C7—C11116.7 (5)C24—C23—H23119.2
C8—C7—C6124.9 (5)C22—C23—H23119.2
C11—C7—C6118.4 (5)C25—C24—C23118.8 (5)
C9—C8—C7120.3 (5)C25—C24—H24120.6
C9—C8—H8119.9C23—C24—H24120.6
C7—C8—H8119.9C26—C25—C24119.9 (5)
C8—C9—C10119.6 (5)C26—C25—H25120.0
C8—C9—H9120.2C24—C25—H25120.0
C10—C9—H9120.2C25—C26—C27122.4 (5)
N2—C10—C9122.5 (5)C25—C26—H26118.8
N2—C10—H10118.7C27—C26—H26118.8
C9—C10—H10118.7C26—C27—C22117.7 (5)
N2—C11—C7123.2 (5)C26—C27—C28118.5 (4)
N2—C11—C12116.4 (4)C22—C27—C28123.7 (4)
C7—C11—C12120.3 (5)C27—C28—H18A109.5
N1—C12—C4124.1 (4)C27—C28—H28B109.5
N1—C12—C11116.1 (4)H18A—C28—H28B109.5
C4—C12—C11119.8 (4)C27—C28—H28C109.5
O2—C13—O1122.1 (5)H18A—C28—H28C109.5
O2—C13—C14122.2 (5)H28B—C28—H28C109.5
Table 1

Selected bond lengths (Å)

Cu—O31.919 (4)
Cu—O11.927 (4)
Cu—N22.010 (4)
Cu—N12.025 (4)
  3 in total

1.  DNA electrochemical biosensor for the detection of short DNA sequences related to the human immunodeficiency virus.

Authors:  J Wang; X Cai; G Rivas; H Shiraishi; P A Farias; N Dontha
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2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Bis(3,4-dimethoxy-benzoato-κO,O')(1,10-phenanthroline-κN,N')copper(II).

Authors:  Yaru Liu; Junshan Sun; Xiaoli Niu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-09
  3 in total
  1 in total

1.  Crystal structure of aqua-bis-(hepta-fluoro-butano-ato-κO)(1,10'-phenanthroline-κ(2) N,N')copper(II).

Authors:  Ibrahim Kani
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-01-01
  1 in total

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