Literature DB >> 21754554

3-[(Cyclo-hexyl-idene)amino]-1-(4-methyl-phen-yl)thio-urea.

Yan-Ling Zhang1, Xiao-Wei Zhang, Fu-Juan Zhang.   

Abstract

In the title compound, C(14)H(19)N(3)S, the cyclo-hexane ring has a chair conformation. The almost planar amino-thio-urea unit (r.m.s. deviation = 0.0062 Å) is aligned at a dihedral angle of 45.23 (8)° with respect to the benzene ring. Inter-molecular N-H⋯N and N-H⋯S hydrogen bonding stabilizes the crystal structure.

Entities:  

Year:  2011        PMID: 21754554      PMCID: PMC3089110          DOI: 10.1107/S1600536811015510

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures and the biological applications of thio­semicarbazones, see: Hu et al. (2006 ▶).

Experimental

Crystal data

C14H19N3S M = 261.38 Orthorhombic, a = 14.9151 (4) Å b = 22.5593 (5) Å c = 17.1642 (3) Å V = 5775.3 (2) Å3 Z = 16 Cu Kα radiation μ = 1.87 mm−1 T = 291 K 0.40 × 0.25 × 0.25 mm

Data collection

Oxford Diffraction Xcalibur Eos Gemini diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010 ▶) T min = 0.521, T max = 0.652 7202 measured reflections 2583 independent reflections 2024 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.162 S = 1.02 2583 reflections 172 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.37 e Å−3 Δρmin = −0.25 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis RED (Oxford Diffraction, 2010 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811015510/xu5197sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811015510/xu5197Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811015510/xu5197Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H19N3SF(000) = 2240
Mr = 261.38Dx = 1.202 Mg m3
Orthorhombic, IbcaCu Kα radiation, λ = 1.54184 Å
Hall symbol: -I 2b 2cCell parameters from 2807 reflections
a = 14.9151 (4) Åθ = 3.2–70.3°
b = 22.5593 (5) ŵ = 1.87 mm1
c = 17.1642 (3) ÅT = 291 K
V = 5775.3 (2) Å3Prismatic, colorless
Z = 160.40 × 0.25 × 0.25 mm
Oxford Diffraction Xcalibur Eos Gemini diffractometer2583 independent reflections
Radiation source: fine-focus sealed tube2024 reflections with I > 2σ(I)
graphiteRint = 0.032
ω scansθmax = 67.1°, θmin = 3.9°
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010)h = −7→17
Tmin = 0.521, Tmax = 0.652k = −26→26
7202 measured reflectionsl = −19→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.162H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.1042P)2 + 0.7804P] where P = (Fo2 + 2Fc2)/3
2583 reflections(Δ/σ)max < 0.001
172 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.88952 (5)0.07068 (3)0.17935 (3)0.0599 (3)
N10.84361 (13)0.02381 (8)0.04022 (10)0.0481 (5)
N20.78485 (14)−0.01953 (8)0.14881 (10)0.0498 (5)
N30.74084 (15)−0.05790 (8)0.09883 (10)0.0514 (5)
C10.89252 (14)0.06343 (9)−0.00784 (12)0.0450 (5)
C20.89188 (19)0.12432 (11)0.00239 (14)0.0557 (6)
H2A0.85720.14130.04140.067*
C30.94341 (19)0.15961 (10)−0.04609 (14)0.0597 (6)
H30.94350.2004−0.03850.072*
C40.99514 (19)0.13567 (10)−0.10592 (13)0.0544 (6)
C50.99072 (18)0.07526 (10)−0.11773 (13)0.0520 (5)
H51.02210.0585−0.15900.062*
C60.94050 (17)0.03922 (10)−0.06944 (12)0.0505 (5)
H60.9388−0.0014−0.07820.061*
C71.0565 (2)0.17332 (13)−0.15541 (18)0.0741 (8)
H7A1.02210.1928−0.19510.111*
H7B1.10110.1486−0.17930.111*
H7C1.08530.2025−0.12330.111*
C80.83781 (15)0.02349 (9)0.11831 (12)0.0460 (5)
C90.68926 (18)−0.09724 (10)0.12732 (14)0.0538 (6)
C100.6399 (2)−0.13589 (14)0.07092 (18)0.0749 (8)
H10A0.6617−0.12840.01860.090*
H10B0.5765−0.12620.07230.090*
C110.6526 (3)−0.20137 (15)0.0908 (2)0.0911 (11)
H11A0.6166−0.22540.05590.109*
H11B0.7149−0.21220.08350.109*
C120.6250 (3)−0.21354 (16)0.1747 (2)0.0961 (11)
H12A0.5615−0.20580.18080.115*
H12B0.6358−0.25490.18690.115*
C130.6773 (2)−0.17499 (16)0.2301 (2)0.0873 (10)
H13A0.7401−0.18610.22790.105*
H13B0.6563−0.18200.28270.105*
C140.6686 (2)−0.10938 (14)0.21164 (16)0.0694 (7)
H14A0.6081−0.09630.22320.083*
H14B0.7096−0.08700.24430.083*
H10.8188 (16)−0.0081 (12)0.0192 (16)0.052 (7)*
H20.799 (2)−0.0305 (14)0.195 (2)0.075 (9)*
U11U22U33U12U13U23
S10.0824 (5)0.0632 (4)0.0341 (3)−0.0172 (3)−0.0022 (3)−0.0052 (2)
N10.0605 (11)0.0528 (9)0.0309 (8)−0.0072 (9)−0.0017 (8)−0.0002 (7)
N20.0634 (11)0.0556 (10)0.0305 (8)−0.0083 (9)0.0003 (9)0.0003 (7)
N30.0674 (12)0.0519 (9)0.0349 (9)−0.0070 (9)−0.0031 (9)−0.0016 (7)
C10.0521 (12)0.0514 (11)0.0316 (10)−0.0003 (9)−0.0032 (9)0.0030 (8)
C20.0735 (15)0.0532 (11)0.0403 (11)0.0110 (11)0.0104 (11)0.0009 (9)
C30.0864 (17)0.0448 (11)0.0478 (12)0.0051 (11)0.0066 (13)0.0030 (9)
C40.0675 (14)0.0561 (12)0.0395 (11)0.0009 (11)0.0037 (11)0.0078 (9)
C50.0638 (13)0.0580 (12)0.0344 (10)0.0066 (11)0.0062 (10)0.0002 (9)
C60.0673 (14)0.0482 (10)0.0358 (10)0.0004 (10)−0.0008 (10)−0.0013 (8)
C70.094 (2)0.0640 (14)0.0641 (16)−0.0064 (15)0.0204 (16)0.0083 (13)
C80.0529 (12)0.0526 (11)0.0323 (10)0.0015 (9)0.0001 (9)−0.0013 (8)
C90.0626 (14)0.0548 (11)0.0441 (12)−0.0055 (11)−0.0049 (11)0.0044 (9)
C100.092 (2)0.0761 (16)0.0568 (15)−0.0252 (16)−0.0137 (15)0.0025 (13)
C110.114 (3)0.0713 (17)0.088 (2)−0.0287 (19)0.002 (2)−0.0052 (16)
C120.109 (3)0.0764 (19)0.103 (3)−0.0260 (19)0.007 (2)0.0240 (19)
C130.088 (2)0.102 (2)0.0714 (19)−0.0172 (19)0.0029 (17)0.0367 (18)
C140.0722 (16)0.0869 (18)0.0490 (14)−0.0193 (15)0.0081 (13)0.0049 (13)
S1—C81.681 (2)C7—H7A0.9600
N1—C81.343 (3)C7—H7B0.9600
N1—C11.418 (3)C7—H7C0.9600
N1—H10.89 (3)C9—C101.497 (4)
N2—C81.356 (3)C9—C141.505 (3)
N2—N31.384 (3)C10—C111.528 (5)
N2—H20.86 (3)C10—H10A0.9700
N3—C91.272 (3)C10—H10B0.9700
C1—C21.385 (3)C11—C121.523 (5)
C1—C61.389 (3)C11—H11A0.9700
C2—C31.385 (4)C11—H11B0.9700
C2—H2A0.9300C12—C131.506 (5)
C3—C41.393 (4)C12—H12A0.9700
C3—H30.9300C12—H12B0.9700
C4—C51.379 (3)C13—C141.519 (5)
C4—C71.510 (4)C13—H13A0.9700
C5—C61.382 (3)C13—H13B0.9700
C5—H50.9300C14—H14A0.9700
C6—H60.9300C14—H14B0.9700
C8—N1—C1128.10 (19)N3—C9—C10117.1 (2)
C8—N1—H1112.0 (17)N3—C9—C14128.3 (2)
C1—N1—H1119.4 (17)C10—C9—C14114.6 (2)
C8—N2—N3118.98 (17)C9—C10—C11111.0 (3)
C8—N2—H2115 (2)C9—C10—H10A109.4
N3—N2—H2121 (2)C11—C10—H10A109.4
C9—N3—N2119.01 (19)C9—C10—H10B109.4
C2—C1—C6119.4 (2)C11—C10—H10B109.4
C2—C1—N1123.2 (2)H10A—C10—H10B108.0
C6—C1—N1117.39 (19)C12—C11—C10110.6 (3)
C3—C2—C1119.4 (2)C12—C11—H11A109.5
C3—C2—H2A120.3C10—C11—H11A109.5
C1—C2—H2A120.3C12—C11—H11B109.5
C2—C3—C4121.8 (2)C10—C11—H11B109.5
C2—C3—H3119.1H11A—C11—H11B108.1
C4—C3—H3119.1C13—C12—C11110.7 (3)
C5—C4—C3117.7 (2)C13—C12—H12A109.5
C5—C4—C7120.1 (2)C11—C12—H12A109.5
C3—C4—C7122.1 (2)C13—C12—H12B109.5
C4—C5—C6121.3 (2)C11—C12—H12B109.5
C4—C5—H5119.4H12A—C12—H12B108.1
C6—C5—H5119.4C12—C13—C14112.8 (3)
C5—C6—C1120.3 (2)C12—C13—H13A109.0
C5—C6—H6119.8C14—C13—H13A109.0
C1—C6—H6119.8C12—C13—H13B109.0
C4—C7—H7A109.5C14—C13—H13B109.0
C4—C7—H7B109.5H13A—C13—H13B107.8
H7A—C7—H7B109.5C9—C14—C13111.1 (3)
C4—C7—H7C109.5C9—C14—H14A109.4
H7A—C7—H7C109.5C13—C14—H14A109.4
H7B—C7—H7C109.5C9—C14—H14B109.4
N1—C8—N2115.25 (19)C13—C14—H14B109.4
N1—C8—S1126.08 (17)H14A—C14—H14B108.0
N2—C8—S1118.67 (16)
D—H···AD—HH···AD···AD—H···A
N1—H1···N3i0.89 (3)2.48 (3)3.268 (3)148 (2)
N2—H2···S1ii0.86 (3)2.70 (3)3.531 (2)164 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯N3i0.89 (3)2.48 (3)3.268 (3)148 (2)
N2—H2⋯S1ii0.86 (3)2.70 (3)3.531 (2)164 (3)

Symmetry codes: (i) ; (ii) .

  2 in total

1.  Synthesis and anticancer activity of thiosemicarbazones.

Authors:  Wei-xiao Hu; Wei Zhou; Chun-nian Xia; Xi Wen
Journal:  Bioorg Med Chem Lett       Date:  2006-02-03       Impact factor: 2.823

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total

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