Literature DB >> 21754392

(2-Chloro-3,5-dinitro-phen-yl)(piperidin-1-yl)methanone.

Xun Luo1, Yun-Chuang Huang, Chao Gao, Luo-Ting Yu.   

Abstract

In the title compound, C(12)H(12)ClN(3)O(5), the piperidine ring adopts a chair conformation. One of the nitro groups is almost coplanar with the aromatic ring [O-N-C-C = -1.4 (2)°], whereas the other one is significantly twisted out of the ring plane [O-N-C-C = 34.7 (2)°]. The crystal packing is stabilized by inter-molecular π-π stacking inter-actions with centroid-centroid distances of 3.579 (3) Å.

Entities:  

Year:  2011        PMID: 21754392      PMCID: PMC3089352          DOI: 10.1107/S1600536811011469

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of benzamide derivatives, see: Christophe et al. (2009 ▶).

Experimental

Crystal data

C12H12ClN3O5 M = 313.70 Orthorhombic, a = 10.7864 (3) Å b = 11.1264 (3) Å c = 21.9775 (5) Å V = 2637.60 (11) Å3 Z = 8 Mo Kα radiation μ = 0.32 mm−1 T = 150 K 0.40 × 0.38 × 0.20 mm

Data collection

Oxford Diffraction Xcalibur Eos diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2006 ▶) T min = 0.979, T max = 1.0 6722 measured reflections 2696 independent reflections 2240 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.077 S = 1.05 2696 reflections 238 parameters All H-atom parameters refined Δρmax = 0.25 e Å−3 Δρmin = −0.24 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811011469/bt5492sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811011469/bt5492Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H12ClN3O5F(000) = 1296
Mr = 313.70Dx = 1.580 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.7107 Å
Hall symbol: -P 2ac 2abCell parameters from 3316 reflections
a = 10.7864 (3) Åθ = 3.2–29.1°
b = 11.1264 (3) ŵ = 0.32 mm1
c = 21.9775 (5) ÅT = 150 K
V = 2637.60 (11) Å3Block, yellow
Z = 80.40 × 0.38 × 0.20 mm
Oxford Diffraction Xcalibur Eos diffractometer2696 independent reflections
Radiation source: fine-focus sealed tube2240 reflections with I > 2σ(I)
graphiteRint = 0.021
Detector resolution: 16.0874 pixels mm-1θmax = 26.4°, θmin = 3.2°
ω scansh = −13→7
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2006)k = −13→13
Tmin = 0.979, Tmax = 1.0l = −27→15
6722 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.077All H-atom parameters refined
S = 1.05w = 1/[σ2(Fo2) + (0.0283P)2 + 0.9862P] where P = (Fo2 + 2Fc2)/3
2696 reflections(Δ/σ)max < 0.001
238 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.14710 (4)0.51437 (4)0.126198 (18)0.02618 (12)
O10.28382 (11)0.39665 (10)0.03083 (6)0.0308 (3)
O20.37259 (10)0.52238 (11)−0.03080 (6)0.0297 (3)
O30.06436 (13)0.74355 (12)−0.14870 (6)0.0376 (3)
O4−0.09872 (13)0.81129 (12)−0.10265 (6)0.0409 (4)
O5−0.18116 (11)0.60708 (11)0.10878 (6)0.0331 (3)
N10.28706 (12)0.49108 (12)0.00224 (6)0.0219 (3)
N2−0.00012 (14)0.75653 (13)−0.10356 (7)0.0269 (3)
N3−0.05433 (13)0.73621 (12)0.15851 (6)0.0238 (3)
C10.10865 (14)0.58412 (14)0.05898 (7)0.0179 (3)
C20.17880 (14)0.57192 (13)0.00600 (7)0.0178 (3)
C30.14762 (15)0.63140 (14)−0.04708 (7)0.0188 (3)
H30.1955 (17)0.6182 (15)−0.0830 (8)0.028 (5)*
C40.04113 (15)0.69969 (13)−0.04645 (7)0.0191 (3)
C5−0.03125 (16)0.71333 (14)0.00470 (7)0.0204 (4)
H5−0.1055 (16)0.7566 (15)0.0036 (7)0.018 (4)*
C60.00352 (14)0.65690 (13)0.05846 (7)0.0177 (3)
C7−0.08451 (15)0.66492 (14)0.11200 (7)0.0207 (3)
C80.05941 (16)0.80784 (16)0.16249 (9)0.0274 (4)
H8A0.1068 (18)0.7963 (17)0.1263 (9)0.034 (5)*
H8B0.1111 (17)0.7754 (16)0.1984 (9)0.032 (5)*
C90.02738 (18)0.93938 (16)0.17196 (8)0.0274 (4)
H9A−0.0143 (18)0.9693 (16)0.1353 (9)0.031 (5)*
H9B0.1038 (18)0.9841 (16)0.1769 (8)0.029 (5)*
C10−0.05450 (17)0.95620 (17)0.22745 (8)0.0274 (4)
H10A−0.0069 (16)0.9325 (15)0.2639 (8)0.025 (5)*
H10B−0.0785 (17)1.0388 (17)0.2320 (8)0.033 (5)*
C11−0.16990 (17)0.87786 (17)0.22253 (9)0.0306 (4)
H11A−0.2230 (19)0.9067 (18)0.1888 (9)0.040 (6)*
H11B−0.2193 (18)0.8836 (16)0.2593 (10)0.041 (6)*
C12−0.13634 (17)0.74677 (16)0.21155 (8)0.0269 (4)
H12A−0.2103 (16)0.7001 (15)0.2041 (8)0.022 (4)*
H12B−0.0908 (17)0.7123 (15)0.2473 (9)0.028 (5)*
U11U22U33U12U13U23
Cl10.0277 (2)0.0334 (2)0.0174 (2)0.00122 (18)−0.00259 (17)0.00550 (16)
O10.0322 (7)0.0251 (6)0.0350 (7)0.0091 (6)−0.0015 (6)0.0029 (6)
O20.0189 (6)0.0370 (7)0.0332 (7)−0.0013 (5)0.0053 (5)−0.0070 (6)
O30.0446 (8)0.0466 (8)0.0216 (7)−0.0021 (7)−0.0007 (6)0.0093 (6)
O40.0399 (8)0.0395 (8)0.0434 (8)0.0123 (7)−0.0068 (7)0.0168 (7)
O50.0250 (6)0.0402 (7)0.0341 (7)−0.0139 (6)0.0082 (6)−0.0182 (6)
N10.0188 (7)0.0246 (7)0.0222 (7)0.0011 (6)−0.0029 (6)−0.0045 (6)
N20.0329 (8)0.0232 (7)0.0246 (8)−0.0050 (7)−0.0055 (7)0.0064 (6)
N30.0220 (7)0.0285 (7)0.0209 (7)−0.0096 (6)0.0061 (6)−0.0079 (6)
C10.0199 (7)0.0175 (8)0.0162 (7)−0.0048 (7)−0.0022 (7)0.0008 (6)
C20.0172 (7)0.0166 (8)0.0198 (8)−0.0012 (7)−0.0015 (6)−0.0035 (6)
C30.0215 (8)0.0191 (8)0.0159 (8)−0.0049 (7)0.0011 (7)−0.0026 (6)
C40.0244 (8)0.0141 (7)0.0187 (8)−0.0030 (7)−0.0036 (7)0.0014 (6)
C50.0203 (8)0.0154 (8)0.0256 (9)0.0010 (7)−0.0010 (7)−0.0022 (7)
C60.0193 (7)0.0151 (7)0.0186 (8)−0.0038 (6)0.0001 (7)−0.0048 (6)
C70.0205 (8)0.0189 (8)0.0228 (9)−0.0007 (7)0.0018 (7)−0.0032 (7)
C80.0225 (9)0.0332 (10)0.0266 (10)−0.0106 (8)0.0062 (8)−0.0110 (8)
C90.0303 (10)0.0295 (10)0.0224 (9)−0.0119 (8)0.0016 (8)−0.0023 (7)
C100.0308 (9)0.0256 (9)0.0258 (9)−0.0027 (8)0.0018 (8)−0.0077 (8)
C110.0261 (9)0.0381 (11)0.0277 (10)−0.0018 (8)0.0076 (8)−0.0098 (8)
C120.0272 (9)0.0322 (9)0.0212 (9)−0.0100 (8)0.0084 (8)−0.0058 (8)
Cl1—C11.7196 (16)C5—H50.935 (17)
O1—N11.2247 (17)C5—C61.389 (2)
O2—N11.2246 (17)C6—C71.515 (2)
O3—N21.2200 (19)C8—H8A0.95 (2)
O4—N21.2260 (19)C8—H8B1.032 (19)
O5—C71.2273 (19)C8—C91.518 (3)
N1—C21.476 (2)C9—H9A0.98 (2)
N2—C41.474 (2)C9—H9B0.97 (2)
N3—C71.334 (2)C9—C101.517 (2)
N3—C81.466 (2)C10—H10A0.987 (18)
N3—C121.468 (2)C10—H10B0.960 (19)
C1—C21.395 (2)C10—C111.523 (2)
C1—C61.394 (2)C11—H11A0.99 (2)
C2—C31.383 (2)C11—H11B0.97 (2)
C3—H30.954 (18)C11—C121.522 (3)
C3—C41.377 (2)C12—H12A0.966 (17)
C4—C51.377 (2)C12—H12B1.004 (19)
O1—N1—C2118.12 (13)C6—C1—Cl1117.75 (12)
O2—N1—O1124.73 (14)C6—C1—C2119.41 (14)
O2—N1—C2117.11 (13)C6—C5—H5119.0 (10)
O3—N2—O4124.53 (15)C7—N3—C8124.97 (14)
O3—N2—C4118.00 (14)C7—N3—C12120.59 (13)
O4—N2—C4117.45 (15)C8—N3—C12114.43 (13)
O5—C7—N3124.28 (15)C8—C9—H9A108.6 (11)
O5—C7—C6117.18 (14)C8—C9—H9B108.5 (10)
N3—C7—C6118.51 (13)H8A—C8—H8B107.6 (15)
N3—C8—H8A109.0 (11)C9—C8—H8A111.5 (12)
N3—C8—H8B107.9 (10)C9—C8—H8B110.8 (10)
N3—C8—C9109.99 (15)C9—C10—H10A108.5 (10)
N3—C12—C11110.24 (15)C9—C10—H10B111.1 (11)
N3—C12—H12A108.7 (10)C9—C10—C11110.37 (15)
N3—C12—H12B107.2 (10)H9A—C9—H9B107.9 (15)
C1—C2—N1122.34 (14)C10—C9—C8111.20 (15)
C1—C6—C7122.55 (14)C10—C9—H9A110.6 (11)
C2—C1—Cl1122.84 (12)C10—C9—H9B110.0 (11)
C2—C3—H3119.5 (11)C10—C11—H11A109.9 (12)
C3—C2—N1115.90 (14)C10—C11—H11B110.6 (11)
C3—C2—C1121.70 (14)H10A—C10—H10B108.1 (15)
C3—C4—N2118.68 (14)C11—C10—H10A109.2 (10)
C4—C3—C2117.30 (15)C11—C10—H10B109.5 (11)
C4—C3—H3122.9 (11)C11—C12—H12A110.2 (10)
C4—C5—H5121.5 (10)C11—C12—H12B111.0 (10)
C4—C5—C6119.43 (15)H11A—C11—H11B106.6 (16)
C5—C4—N2118.47 (14)C12—C11—C10111.42 (15)
C5—C4—C3122.80 (15)C12—C11—H11A109.2 (12)
C5—C6—C1119.29 (14)C12—C11—H11B109.0 (11)
C5—C6—C7117.69 (14)H12A—C12—H12B109.3 (14)
Cl1—C1—C2—N14.4 (2)C2—C3—C4—N2−175.24 (14)
Cl1—C1—C2—C3−178.34 (12)C2—C3—C4—C52.1 (2)
Cl1—C1—C6—C5−179.12 (12)C3—C4—C5—C60.3 (2)
Cl1—C1—C6—C7−7.17 (19)C4—C5—C6—C1−2.2 (2)
O1—N1—C2—C134.7 (2)C4—C5—C6—C7−174.59 (14)
O1—N1—C2—C3−142.65 (15)C5—C6—C7—O571.21 (19)
O2—N1—C2—C1−147.16 (15)C5—C6—C7—N3−106.95 (18)
O2—N1—C2—C335.45 (19)C6—C1—C2—N1−176.46 (13)
O3—N2—C4—C3−2.2 (2)C6—C1—C2—C30.8 (2)
O3—N2—C4—C5−179.72 (14)C7—N3—C8—C9123.65 (18)
O4—N2—C4—C3176.04 (14)C7—N3—C12—C11−124.47 (17)
O4—N2—C4—C5−1.4 (2)C8—N3—C7—O5−178.63 (17)
N1—C2—C3—C4174.76 (13)C8—N3—C7—C6−0.6 (2)
N2—C4—C5—C6177.67 (14)C8—N3—C12—C1156.3 (2)
N3—C8—C9—C1055.5 (2)C8—C9—C10—C11−55.0 (2)
C1—C2—C3—C4−2.6 (2)C9—C10—C11—C1254.1 (2)
C1—C6—C7—O5−100.86 (19)C10—C11—C12—N3−53.7 (2)
C1—C6—C7—N381.0 (2)C12—N3—C7—O52.2 (3)
C2—C1—C6—C51.7 (2)C12—N3—C7—C6−179.80 (15)
C2—C1—C6—C7173.67 (14)C12—N3—C8—C9−57.1 (2)
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