Literature DB >> 21754299

catena-Poly[diimidazolium [bis-(μ-pyridine-2,5-dicarboxyl-ato)bis-[diaqua-praseodymate(III)]]-bis-(μ-pyridine-2,5-dicarboxyl-ato)].

Wenjun Zhang, Yanmei Chen, Tao Lei, Yahong Li, Wu Li.   

Abstract

The title compound {(C(3)H(5)N(2))(2)[Pr(2)(C(7)H(3)NO(4))(4)(H(2)O)(4)]}(n), has a chain structure featuring a dimeric unit consisting of two Pr(III) atoms within a dodecahedral environment. Each of the metal cations is coordinated by two N atoms and two O atoms from two pyridine-2,5-dicarboxyl-ate ligands, two O atoms from another two pyridine-2,5-dicarboxyl-ate ligands and two water O atoms. The Pr(III) ions are bridged by two ligands along the c axis, forming the dimeric unit, and these are connected by four ligands along the b axis, forming a chain. N-H⋯O and O-H⋯O hydrogen bonds are found in the structure.

Entities:  

Year:  2011        PMID: 21754299      PMCID: PMC3089278          DOI: 10.1107/S1600536811012360

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For praseodymium complexes with pyridine-dicarboxylate ligands, see: Chen et al. (2011 ▶); Zhao et al. (2009 ▶); Song et al. (2006 ▶); Chi et al. (2009 ▶). For complexes with similar structures, see: Li, Zhang et al. (2009 ▶); Li, Chen et al. (2009 ▶); Huang et al. (2009 ▶); Zhang et al. (2005 ▶, 2007 ▶).

Experimental

Crystal data

(C3H5N2)2[Pr2(C7H3NO4)4(H2O)4] M = 1152.48 Triclinic, a = 9.5444 (19) Å b = 10.667 (2) Å c = 11.222 (2) Å α = 64.63 (3)° β = 79.50 (3)° γ = 87.50 (3)° V = 1014.3 (3) Å3 Z = 1 Mo Kα radiation μ = 2.47 mm−1 T = 293 K 0.19 × 0.16 × 0.09 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.652, T max = 0.809 14917 measured reflections 3561 independent reflections 3468 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.015 wR(F 2) = 0.043 S = 1.04 3561 reflections 305 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.45 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811012360/jh2277sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811012360/jh2277Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C3H5N2)2[Pr2(C7H3NO4)4(H2O)4]Z = 1
Mr = 1152.48F(000) = 568
Triclinic, P1char
Hall symbol: -p 1Dx = 1.887 Mg m3
a = 9.5444 (19) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.667 (2) ÅCell parameters from 3561 reflections
c = 11.222 (2) Åθ = 2.6–25.5°
α = 64.63 (3)°µ = 2.47 mm1
β = 79.50 (3)°T = 293 K
γ = 87.50 (3)°Block, light green
V = 1014.3 (3) Å30.19 × 0.16 × 0.09 mm
Bruker SMART CCD area-detector diffractometer3561 independent reflections
Radiation source: fine-focus sealed tube3468 reflections with I > 2σ(I)
graphiteRint = 0.020
ω scansθmax = 25.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −11→11
Tmin = 0.652, Tmax = 0.809k = −12→12
14917 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.015Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.043H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0271P)2 + 0.5143P] where P = (Fo2 + 2Fc2)/3
3561 reflections(Δ/σ)max = 0.068
305 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.45 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Pr10.194718 (10)0.107410 (10)0.725374 (9)0.01889 (5)
O10.17790 (15)0.14537 (16)0.92701 (14)0.0277 (3)
N10.43859 (18)0.13489 (18)0.79437 (16)0.0228 (4)
O40.94311 (15)0.15185 (18)0.73503 (16)0.0337 (4)
N20.36969 (19)0.25158 (18)0.49260 (17)0.0250 (4)
C50.5686 (2)0.1198 (2)0.7350 (2)0.0252 (4)
H50.57610.09490.66420.030*
O90.0720 (2)−0.1109 (2)0.89507 (19)0.0386 (4)
O50.19850 (19)0.35430 (16)0.63801 (16)0.0379 (4)
O100.1175 (2)0.0591 (2)0.5508 (2)0.0473 (5)
C70.8356 (2)0.1232 (2)0.7005 (2)0.0263 (5)
O30.83952 (17)0.0841 (2)0.60974 (18)0.0429 (4)
C10.4287 (2)0.1698 (2)0.89743 (19)0.0205 (4)
C60.2795 (2)0.1837 (2)0.9634 (2)0.0248 (4)
O60.2580 (2)0.57179 (18)0.49073 (19)0.0560 (6)
C20.5464 (2)0.1908 (2)0.9421 (2)0.0269 (5)
H20.53610.21521.01330.032*
C40.6928 (2)0.1394 (2)0.7731 (2)0.0223 (4)
C80.3728 (2)0.3897 (2)0.4479 (2)0.0291 (5)
O20.26769 (19)0.2280 (2)1.0488 (2)0.0498 (5)
C130.2689 (3)0.4449 (2)0.5310 (2)0.0325 (5)
C30.6802 (2)0.1750 (2)0.8796 (2)0.0264 (4)
H30.76110.18820.90880.032*
C120.4576 (2)0.1982 (2)0.4206 (2)0.0263 (4)
H120.45420.10250.44940.032*
N40.0958 (3)0.3420 (3)0.1892 (2)0.0493 (6)
H40.13340.29300.14850.059*
C15−0.0147 (3)0.3044 (3)0.2871 (3)0.0434 (6)
H15−0.06510.21960.32460.052*
C170.0534 (4)0.5118 (3)0.2475 (4)0.0757 (12)
H170.05780.59610.25290.091*
N3−0.0426 (3)0.4050 (2)0.3233 (2)0.0471 (6)
H3A−0.11100.40390.38540.056*
C160.1408 (4)0.4721 (3)0.1631 (4)0.0760 (12)
H160.21770.52370.09870.091*
C110.5533 (2)0.2772 (2)0.3059 (2)0.0262 (5)
C140.6545 (2)0.2095 (2)0.2339 (2)0.0259 (4)
C100.5552 (3)0.4201 (3)0.2616 (3)0.0439 (7)
H100.61760.47690.18450.053*
C90.4634 (3)0.4765 (2)0.3334 (3)0.0460 (7)
H90.46240.57220.30510.055*
O80.7309 (2)0.28565 (18)0.12655 (17)0.0446 (5)
O70.65553 (16)0.07807 (15)0.28965 (15)0.0308 (3)
H9A0.002 (4)−0.129 (3)0.946 (3)0.041 (8)*
H10A0.025 (4)0.069 (3)0.564 (3)0.062 (10)*
H10B0.149 (4)0.034 (4)0.501 (4)0.066 (12)*
H9B0.111 (4)−0.174 (3)0.904 (3)0.047 (10)*
U11U22U33U12U13U23
Pr10.01230 (7)0.02507 (7)0.02203 (7)0.00136 (5)0.00114 (5)−0.01435 (5)
O10.0164 (7)0.0434 (9)0.0278 (7)−0.0005 (6)0.0028 (6)−0.0218 (7)
N10.0155 (8)0.0325 (9)0.0258 (8)0.0028 (7)−0.0017 (7)−0.0184 (7)
O40.0152 (8)0.0515 (10)0.0452 (9)0.0058 (7)−0.0054 (7)−0.0313 (8)
N20.0237 (9)0.0243 (9)0.0255 (8)0.0045 (7)0.0023 (7)−0.0122 (7)
C50.0183 (11)0.0369 (12)0.0272 (10)0.0040 (9)−0.0011 (8)−0.0213 (9)
O90.0263 (9)0.0326 (10)0.0447 (10)0.0001 (8)0.0163 (8)−0.0139 (8)
O50.0420 (10)0.0259 (8)0.0365 (9)0.0040 (7)0.0156 (7)−0.0139 (7)
O100.0226 (10)0.0907 (16)0.0575 (12)0.0071 (9)−0.0061 (8)−0.0598 (12)
C70.0170 (11)0.0327 (11)0.0320 (11)0.0055 (9)−0.0022 (9)−0.0178 (9)
O30.0201 (8)0.0775 (13)0.0533 (10)0.0061 (8)−0.0017 (7)−0.0512 (10)
C10.0184 (10)0.0224 (9)0.0210 (9)0.0024 (8)0.0003 (8)−0.0113 (8)
C60.0210 (11)0.0292 (11)0.0259 (10)0.0025 (9)0.0015 (8)−0.0157 (9)
O60.0734 (14)0.0263 (9)0.0484 (11)0.0104 (9)0.0250 (10)−0.0122 (8)
C20.0255 (11)0.0359 (12)0.0248 (10)0.0018 (9)−0.0016 (9)−0.0192 (9)
C40.0166 (10)0.0255 (10)0.0240 (10)0.0028 (8)−0.0013 (8)−0.0111 (8)
C80.0301 (12)0.0260 (11)0.0286 (11)0.0062 (9)0.0020 (9)−0.0126 (9)
O20.0279 (9)0.0867 (14)0.0640 (12)0.0029 (9)0.0032 (8)−0.0643 (12)
C130.0342 (13)0.0275 (12)0.0332 (11)0.0086 (10)0.0041 (10)−0.0155 (10)
C30.0187 (10)0.0351 (11)0.0300 (10)0.0024 (9)−0.0059 (8)−0.0177 (9)
C120.0277 (11)0.0218 (10)0.0274 (10)0.0045 (9)0.0025 (9)−0.0117 (9)
N40.0505 (14)0.0556 (14)0.0455 (13)0.0149 (12)0.0073 (11)−0.0326 (11)
C150.0455 (16)0.0406 (14)0.0449 (14)0.0077 (12)0.0026 (12)−0.0239 (12)
C170.080 (3)0.0472 (18)0.089 (3)−0.0075 (17)0.039 (2)−0.0394 (18)
N30.0485 (14)0.0444 (12)0.0450 (12)0.0069 (11)0.0155 (11)−0.0259 (10)
C160.074 (2)0.0543 (19)0.078 (2)−0.0050 (17)0.0407 (19)−0.0288 (17)
C110.0247 (11)0.0277 (11)0.0249 (10)0.0054 (9)0.0004 (9)−0.0122 (9)
C140.0209 (11)0.0324 (11)0.0271 (10)0.0040 (9)0.0000 (9)−0.0172 (9)
C100.0512 (16)0.0282 (12)0.0367 (13)0.0020 (11)0.0191 (12)−0.0099 (10)
C90.0570 (18)0.0217 (11)0.0423 (14)0.0075 (11)0.0175 (13)−0.0089 (10)
O80.0481 (11)0.0357 (9)0.0361 (9)0.0047 (8)0.0184 (8)−0.0128 (7)
O70.0261 (8)0.0275 (8)0.0378 (8)0.0042 (6)0.0054 (7)−0.0176 (7)
Pr1—O52.3835 (17)O6—C131.236 (3)
Pr1—O4i2.4193 (16)C2—C31.380 (3)
Pr1—O7ii2.4366 (16)C2—H20.9300
Pr1—O12.4407 (15)C4—C31.385 (3)
Pr1—O102.4643 (18)C8—C91.379 (3)
Pr1—O92.459 (2)C8—C131.511 (3)
Pr1—N12.6484 (18)C3—H30.9300
Pr1—N22.677 (2)C12—C111.382 (3)
O1—C61.263 (3)C12—H120.9300
N1—C51.335 (3)N4—C151.310 (4)
N1—C11.346 (3)N4—C161.361 (4)
O4—C71.253 (3)N4—H40.8600
O4—Pr1iii2.4193 (16)C15—N31.303 (3)
N2—C81.337 (3)C15—H150.9300
N2—C121.336 (3)C17—C161.341 (4)
C5—C41.384 (3)C17—N31.355 (4)
C5—H50.9300C17—H170.9300
O9—H9A0.77 (3)N3—H3A0.8600
O9—H9B0.73 (3)C16—H160.9300
O5—C131.263 (3)C11—C101.386 (3)
O10—H10A0.88 (4)C11—C141.504 (3)
O10—H10B0.73 (4)C14—O81.240 (3)
C7—O31.249 (3)C14—O71.267 (3)
C7—C41.499 (3)C10—C91.376 (3)
C1—C21.373 (3)C10—H100.9300
C1—C61.513 (3)C9—H90.9300
C6—O21.224 (3)O7—Pr1ii2.4366 (16)
O5—Pr1—O4i78.67 (7)C2—C1—C6121.25 (18)
O5—Pr1—O7ii139.99 (6)O2—C6—O1125.8 (2)
O4i—Pr1—O7ii135.10 (6)O2—C6—C1117.6 (2)
O5—Pr1—O177.58 (6)O1—C6—C1116.62 (17)
O4i—Pr1—O187.46 (6)C1—C2—C3119.03 (19)
O7ii—Pr1—O1117.28 (6)C1—C2—H2120.5
O5—Pr1—O10104.04 (8)C3—C2—H2120.5
O4i—Pr1—O1072.69 (6)C3—C4—C5117.72 (19)
O7ii—Pr1—O1075.16 (7)C3—C4—C7121.57 (19)
O1—Pr1—O10159.11 (6)C5—C4—C7120.71 (18)
O5—Pr1—O9145.52 (6)N2—C8—C9122.7 (2)
O4i—Pr1—O974.82 (7)N2—C8—C13115.37 (19)
O7ii—Pr1—O973.98 (6)C9—C8—C13121.9 (2)
O1—Pr1—O979.59 (6)O6—C13—O5125.2 (2)
O10—Pr1—O988.76 (8)O6—C13—C8119.1 (2)
O5—Pr1—N183.59 (7)O5—C13—C8115.67 (19)
O4i—Pr1—N1148.64 (5)C2—C3—C4119.4 (2)
O7ii—Pr1—N173.00 (6)C2—C3—H3120.3
O1—Pr1—N163.42 (5)C4—C3—H3120.3
O10—Pr1—N1137.32 (6)N2—C12—C11123.74 (19)
O9—Pr1—N1108.60 (7)N2—C12—H12118.1
O5—Pr1—N262.40 (6)C11—C12—H12118.1
O4i—Pr1—N2117.33 (6)C15—N4—C16108.2 (2)
O7ii—Pr1—N280.22 (6)C15—N4—H4125.9
O1—Pr1—N2124.85 (5)C16—N4—H4125.9
O10—Pr1—N271.92 (7)N3—C15—N4109.0 (3)
O9—Pr1—N2151.07 (6)N3—C15—H15125.5
N1—Pr1—N275.27 (6)N4—C15—H15125.5
C6—O1—Pr1125.79 (12)C16—C17—N3106.5 (3)
C5—N1—C1117.88 (18)C16—C17—H17126.8
C5—N1—Pr1126.03 (13)N3—C17—H17126.8
C1—N1—Pr1116.08 (13)C15—N3—C17109.1 (2)
C7—O4—Pr1iii140.65 (14)C15—N3—H3A125.4
C8—N2—C12117.46 (18)C17—N3—H3A125.4
C8—N2—Pr1116.34 (13)C17—C16—N4107.2 (3)
C12—N2—Pr1126.14 (13)C17—C16—H16126.4
N1—C5—C4123.45 (19)N4—C16—H16126.4
N1—C5—H5118.3C12—C11—C10117.9 (2)
C4—C5—H5118.3C12—C11—C14120.9 (2)
Pr1—O9—H9A134 (2)C10—C11—C14121.2 (2)
Pr1—O9—H9B115 (3)O8—C14—O7125.3 (2)
H9A—O9—H9B111 (3)O8—C14—C11118.0 (2)
C13—O5—Pr1130.05 (14)O7—C14—C11116.74 (18)
Pr1—O10—H10A103 (2)C9—C10—C11119.0 (2)
Pr1—O10—H10B137 (3)C9—C10—H10120.5
H10A—O10—H10B119 (4)C11—C10—H10120.5
O3—C7—O4124.8 (2)C10—C9—C8119.3 (2)
O3—C7—C4118.38 (19)C10—C9—H9120.4
O4—C7—C4116.84 (19)C8—C9—H9120.4
N1—C1—C2122.48 (18)C14—O7—Pr1ii138.92 (13)
N1—C1—C6116.26 (18)
D—H···AD—HH···AD···AD—H···A
N4—H4···O2iv0.861.852.679 (3)160
N3—H3A···O6v0.861.882.735 (3)172
N3—H3A···O5v0.862.593.063 (3)115
O9—H9A···O1vi0.77 (3)1.98 (3)2.743 (3)172 (3)
O10—H10A···O3i0.88 (4)1.77 (4)2.645 (3)173 (3)
O10—H10A···O4i0.88 (4)2.44 (3)2.894 (3)113 (3)
O10—H10B···O3ii0.73 (4)2.10 (4)2.789 (3)157 (4)
O9—H9B···O8ii0.73 (3)1.96 (4)2.644 (3)157 (3)
Table 1

Selected geometric parameters (Å, °)

Pr1—O52.3835 (17)
Pr1—O4i2.4193 (16)
Pr1—O7ii2.4366 (16)
Pr1—O12.4407 (15)
Pr1—O102.4643 (18)
Pr1—O92.459 (2)
Pr1—N12.6484 (18)
Pr1—N22.677 (2)

Symmetry codes: (i) ; (ii) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4⋯O2iv0.861.852.679 (3)160
N3—H3A⋯O6v0.861.882.735 (3)172
N3—H3A⋯O5v0.862.593.063 (3)115
O9—H9A⋯O1vi0.77 (3)1.98 (3)2.743 (3)172 (3)
O10—H10A⋯O3i0.88 (4)1.77 (4)2.645 (3)173 (3)
O10—H10A⋯O4i0.88 (4)2.44 (3)2.894 (3)113 (3)
O10—H10B⋯O3ii0.73 (4)2.10 (4)2.789 (3)157 (4)
O9—H9B⋯O8ii0.73 (3)1.96 (4)2.644 (3)157 (3)

Symmetry codes: (i) ; (ii) ; (iv) ; (v) ; (vi) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  catena-Poly[[[diaqua-terbium(III)]-μ-6-carboxy-nicotinato-μ-pyridine-2,5-di-carboxyl-ato] dihydrate].

Authors:  Sheng Li; Fu-Li Zhang; Shou-Bin Wang; Hui-Ling Bai
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-19

3.  catena-Poly[[[diaqua-thulium(III)]-μ-6-carboxy-nicotinato-μ-pyridine-2,5-di-carboxyl-ato] dihydrate].

Authors:  Sheng Li; Yue Chen; Hong-Mei He; Yuan-Fang Ma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-19
  3 in total
  2 in total

1.  Poly[1H-imidazol-3-ium [di-μ-nitrato-sodium]].

Authors:  Chahrazed Trifa; Amira Bouhali; Sofiane Bouacida; Chaouki Boudaren; Thierry Bataille
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-05-11

2.  Structural characterization of two tetra-chlorido-zincate salts of 4-carb-oxy-1H-imidazol-3-ium: a salt hydrate and a co-crystal salt hydrate.

Authors:  Sean J Martens; David K Geiger
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-01-13
  2 in total

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