Literature DB >> 21582353

catena-Poly[[[diaqua-terbium(III)]-μ-6-carboxy-nicotinato-μ-pyridine-2,5-di-carboxyl-ato] dihydrate].

Sheng Li, Fu-Li Zhang, Shou-Bin Wang, Hui-Ling Bai.   

Abstract

The title compound, {[Tb(C(7)H(3)NO(4))(C(7)H(4)NO(4))(H(2)O)(2)]·2H(2)O}(n), is isotypic with the analogous Tm(III) compound [Li, Zhang, Wang & Bai (2009). Acta Cryst. E65, m411]. The Tb(III) atom is octa-coordinated by two water mol-ecules and by four carboxyl-ate O atoms and two pyridyl N atoms from two pyridine-2,5-dicarboxyl-ate (2,5-pydc) and two 6-carboxy-nicotinate (2,5-Hpydc) ligands. The 2,5-pydc and 2,5-Hpydc ligands bridge Tb(III) atoms, generating helical coordination polymers along [001]. An extensive network of O-H⋯O hydrogen bonds is formed between the coordination polymers and the uncoordinated water mol-ecules. The refined Flack parameter of 0.54 (2) suggests inversion twinning.

Entities:  

Year:  2009        PMID: 21582353      PMCID: PMC2968984          DOI: 10.1107/S1600536809008824

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the isotypic TmIII compound, see Li et al. (2009 ▶). For other related structures, see: Huang et al. (2007 ▶).

Experimental

Crystal data

[Tb(C7H3NO4)(C7H4NO4)(H2O)2]·2H2O M = 562.20 Tetragonal, a = 15.107 (2) Å c = 14.8587 (15) Å V = 3391.1 (7) Å3 Z = 8 Mo Kα radiation μ = 4.25 mm−1 T = 298 K 0.12 × 0.11 × 0.08 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.617, T max = 0.713 6901 measured reflections 3001 independent reflections 2886 reflections with I > 2σ(I) R int = 0.072

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.131 S = 1.03 3001 reflections 263 parameters H-atom parameters constrained Δρmax = 3.51 e Å−3 Δρmin = −1.17 e Å−3 Absolute structure: Flack (1983 ▶), with 1387 Friedel pairs Flack parameter: 0.54 (2) Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809008824/bi2349sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809008824/bi2349Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Tb(C7H3NO4)(C7H4NO4)(H2O)2]·2H2ODx = 2.202 Mg m3
Mr = 562.20Mo Kα radiation, λ = 0.71073 Å
Tetragonal, I4Cell parameters from 3001 reflections
Hall symbol: I -4θ = 1.9–25.3°
a = 15.107 (2) ŵ = 4.25 mm1
c = 14.8587 (15) ÅT = 298 K
V = 3391.1 (7) Å3Block, colourless
Z = 80.12 × 0.11 × 0.08 mm
F(000) = 2192
Bruker APEXII CCD diffractometer3001 independent reflections
Radiation source: fine-focus sealed tube2886 reflections with I > 2σ(I)
graphiteRint = 0.072
φ and ω scansθmax = 25.3°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −12→18
Tmin = 0.617, Tmax = 0.713k = −18→17
6901 measured reflectionsl = −13→17
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.053H-atom parameters constrained
wR(F2) = 0.131w = 1/[σ2(Fo2) + (0.1007P)2 + 0.8682P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
3001 reflectionsΔρmax = 3.51 e Å3
263 parametersΔρmin = −1.17 e Å3
0 restraintsAbsolute structure: Flack (1983), 1387 Freidel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.54 (2)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Tb10.30210 (3)0.22535 (3)0.22736 (3)0.01388 (17)
C10.1833 (6)0.4100 (6)0.1946 (6)0.0116 (19)
C20.1334 (7)0.4753 (6)0.1553 (6)0.0148 (19)
H2A0.11280.52220.19000.018*
C30.1132 (7)0.4720 (7)0.0639 (7)0.019 (2)
H3A0.07960.51660.03760.023*
C40.1433 (6)0.4021 (6)0.0129 (7)0.015 (2)
C50.1879 (7)0.3364 (7)0.0575 (8)0.021 (2)
H5A0.20460.28640.02510.025*
C60.2161 (6)0.4123 (6)0.2921 (6)0.015 (2)
C70.1302 (7)0.3959 (7)−0.0870 (7)0.017 (2)
C80.1196 (7)0.1238 (6)0.1716 (7)0.014 (2)
C90.0975 (6)0.1488 (6)0.2710 (7)0.0129 (18)
C100.0233 (6)0.1192 (7)0.3157 (7)0.017 (2)
H10A−0.01950.08650.28540.021*
C110.0131 (7)0.1383 (7)0.4052 (7)0.018 (2)
H11A−0.03510.11580.43660.022*
C120.0768 (6)0.1929 (6)0.4506 (6)0.0115 (18)
C130.1449 (7)0.2207 (7)0.3980 (7)0.019 (2)
H13A0.18650.25770.42490.023*
C140.0684 (7)0.2114 (7)0.5505 (7)0.018 (2)
N10.1583 (5)0.2001 (5)0.3112 (6)0.0142 (16)
N20.2094 (5)0.3400 (5)0.1465 (6)0.0142 (17)
O10.2739 (5)0.3551 (4)0.3099 (5)0.0178 (15)
H10.30580.36430.35610.027*
O20.1862 (6)0.4677 (6)0.3436 (5)0.035 (2)
O30.1625 (5)0.3283 (5)−0.1271 (5)0.0212 (16)
O40.0921 (6)0.4561 (5)−0.1264 (5)0.0262 (18)
O50.1946 (5)0.1457 (5)0.1459 (5)0.0208 (16)
O60.0625 (5)0.0865 (5)0.1277 (5)0.0240 (17)
O70.0056 (6)0.1862 (6)0.5922 (6)0.033 (2)
O80.1326 (5)0.2550 (5)0.5846 (5)0.0214 (16)
O90.3704 (5)0.0819 (5)0.1997 (5)0.0240 (17)
H910.38220.07000.25430.036*
H920.42220.08490.17780.036*
O100.4504 (5)0.2736 (5)0.2620 (5)0.0236 (16)
H1010.46410.28680.20820.035*
H1020.48750.23270.27290.035*
O110.2668 (7)0.0205 (6)0.0225 (6)0.045 (2)
H1110.24520.05780.05930.068*
H1120.28120.0241−0.03270.068*
O120.1257 (7)−0.0901 (6)0.0634 (7)0.046 (2)
H1210.0724−0.08900.08180.068*
H1220.1145−0.08210.00790.068*
U11U22U33U12U13U23
Tb10.0145 (3)0.0144 (3)0.0128 (2)0.00004 (17)−0.00014 (19)0.00015 (19)
C10.013 (5)0.011 (4)0.011 (4)−0.002 (4)0.001 (4)0.006 (4)
C20.022 (5)0.008 (4)0.014 (4)0.002 (4)0.007 (4)−0.001 (4)
C30.015 (5)0.020 (5)0.023 (5)0.007 (4)−0.002 (4)−0.001 (4)
C40.017 (5)0.013 (5)0.016 (5)−0.003 (4)−0.011 (4)0.000 (4)
C50.021 (5)0.016 (5)0.026 (5)0.005 (4)−0.007 (4)−0.009 (4)
C60.016 (5)0.012 (4)0.017 (6)−0.001 (4)0.002 (4)−0.008 (4)
C70.012 (5)0.020 (5)0.019 (5)0.000 (4)0.004 (4)−0.007 (4)
C80.023 (5)0.006 (4)0.012 (4)0.004 (4)−0.003 (4)−0.006 (4)
C90.018 (4)0.013 (4)0.008 (4)−0.002 (4)−0.002 (4)0.006 (4)
C100.014 (5)0.018 (5)0.020 (5)−0.001 (4)−0.003 (4)−0.004 (4)
C110.015 (5)0.023 (5)0.018 (5)0.000 (4)−0.007 (4)0.007 (4)
C120.008 (4)0.015 (4)0.012 (4)0.004 (4)0.008 (4)0.000 (4)
C130.018 (5)0.022 (5)0.017 (5)0.001 (4)−0.002 (4)−0.006 (4)
C140.014 (5)0.025 (6)0.014 (5)0.001 (5)−0.003 (4)−0.004 (4)
N10.013 (4)0.012 (4)0.018 (4)−0.001 (3)−0.001 (4)−0.002 (4)
N20.013 (4)0.015 (4)0.015 (4)0.003 (3)−0.002 (3)−0.002 (3)
O10.021 (3)0.016 (3)0.016 (3)−0.001 (3)−0.007 (3)−0.003 (3)
O20.050 (5)0.035 (5)0.019 (4)0.019 (4)−0.006 (4)−0.002 (4)
O30.020 (4)0.026 (4)0.017 (4)0.007 (3)−0.002 (3)−0.004 (3)
O40.032 (4)0.024 (4)0.022 (4)0.017 (3)−0.006 (3)−0.002 (3)
O50.017 (4)0.021 (4)0.024 (4)−0.003 (3)0.003 (3)−0.004 (3)
O60.019 (4)0.029 (4)0.024 (4)−0.005 (3)0.001 (3)−0.006 (3)
O70.030 (4)0.045 (5)0.024 (4)−0.016 (4)0.011 (4)−0.004 (4)
O80.019 (4)0.032 (4)0.013 (3)−0.010 (3)0.002 (3)−0.007 (3)
O90.025 (4)0.031 (4)0.016 (3)0.000 (3)0.008 (3)0.007 (3)
O100.021 (4)0.035 (4)0.014 (4)−0.001 (3)0.005 (3)0.006 (3)
O110.064 (6)0.039 (5)0.033 (5)0.012 (5)0.014 (5)−0.010 (4)
O120.053 (6)0.045 (6)0.039 (5)0.018 (5)−0.004 (5)0.011 (5)
Tb1—O12.351 (7)C8—C91.560 (14)
Tb1—O52.356 (7)C9—N11.341 (12)
Tb1—O8i2.358 (7)C9—C101.379 (14)
Tb1—O3ii2.371 (7)C10—C111.368 (16)
Tb1—O102.412 (7)C10—H10A0.930
Tb1—O92.435 (8)C11—C121.435 (14)
Tb1—N22.531 (8)C11—H11A0.930
Tb1—N12.534 (8)C12—C131.359 (14)
C1—N21.335 (13)C12—C141.516 (13)
C1—C21.373 (13)C13—N11.343 (15)
C1—C61.531 (13)C13—H13A0.930
C2—C31.393 (15)C14—O71.195 (14)
C2—H2A0.930C14—O81.277 (12)
C3—C41.378 (15)O1—H10.850
C3—H3A0.930O3—Tb1i2.371 (7)
C4—C51.370 (15)O8—Tb1ii2.358 (7)
C4—C71.500 (15)O9—H910.850
C5—N21.363 (15)O9—H920.850
C5—H5A0.930O10—H1010.850
C6—O21.221 (13)O10—H1020.850
C6—O11.256 (12)O11—H1110.850
C7—O41.226 (13)O11—H1120.850
C7—O31.279 (13)O12—H1210.850
C8—O61.219 (12)O12—H1220.850
C8—O51.242 (13)
O1—Tb1—O5124.7 (3)O1—C6—C1114.1 (8)
O1—Tb1—O8i116.1 (3)O4—C7—O3123.3 (10)
O5—Tb1—O8i83.7 (2)O4—C7—C4119.3 (9)
O1—Tb1—O3ii81.4 (3)O3—C7—C4117.4 (9)
O5—Tb1—O3ii116.7 (3)O6—C8—O5127.2 (10)
O8i—Tb1—O3ii140.3 (2)O6—C8—C9117.9 (9)
O1—Tb1—O1078.8 (2)O5—C8—C9114.9 (8)
O5—Tb1—O10154.8 (3)N1—C9—C10121.9 (10)
O8i—Tb1—O1076.4 (2)N1—C9—C8114.6 (9)
O3ii—Tb1—O1072.5 (2)C10—C9—C8123.5 (9)
O1—Tb1—O9155.1 (2)C11—C10—C9119.4 (10)
O5—Tb1—O975.6 (3)C11—C10—H10A120.3
O8i—Tb1—O977.5 (3)C9—C10—H10A120.3
O3ii—Tb1—O975.8 (2)C10—C11—C12120.2 (10)
O10—Tb1—O984.9 (3)C10—C11—H11A119.9
O1—Tb1—N264.9 (3)C12—C11—H11A119.9
O5—Tb1—N274.0 (3)C13—C12—C11114.5 (9)
O8i—Tb1—N273.6 (3)C13—C12—C14124.7 (10)
O3ii—Tb1—N2142.3 (3)C11—C12—C14120.7 (9)
O10—Tb1—N2114.1 (3)N1—C13—C12126.4 (10)
O9—Tb1—N2139.8 (3)N1—C13—H13A116.8
O1—Tb1—N173.4 (3)C12—C13—H13A116.8
O5—Tb1—N165.5 (3)O7—C14—O8124.1 (10)
O8i—Tb1—N1145.1 (3)O7—C14—C12121.0 (10)
O3ii—Tb1—N172.1 (3)O8—C14—C12114.8 (9)
O10—Tb1—N1137.5 (3)C9—N1—C13117.4 (9)
O9—Tb1—N1108.2 (3)C9—N1—Tb1117.1 (7)
N2—Tb1—N182.1 (3)C13—N1—Tb1124.5 (7)
N2—C1—C2120.3 (9)C1—N2—C5118.7 (9)
N2—C1—C6115.4 (8)C1—N2—Tb1116.8 (6)
C2—C1—C6124.3 (9)C5—N2—Tb1124.4 (7)
C1—C2—C3120.6 (9)C6—O1—Tb1126.1 (6)
C1—C2—H2A119.7C6—O1—H1116.9
C3—C2—H2A119.7Tb1—O1—H1117.0
C4—C3—C2119.5 (9)C7—O3—Tb1i141.6 (7)
C4—C3—H3A120.2C8—O5—Tb1127.4 (6)
C2—C3—H3A120.2C14—O8—Tb1ii137.7 (6)
C5—C4—C3116.8 (9)Tb1—O9—H9196.6
C5—C4—C7119.9 (9)Tb1—O9—H92114.0
C3—C4—C7123.3 (9)H91—O9—H92100.6
N2—C5—C4123.9 (9)Tb1—O10—H10195.5
N2—C5—H5A118.0Tb1—O10—H102115.7
C4—C5—H5A118.0H101—O10—H102100.9
O2—C6—O1126.6 (9)H111—O11—H112132.5
O2—C6—C1119.3 (9)H121—O12—H12296.9
N2—C1—C2—C3−3.4 (15)O3ii—Tb1—N1—C1341.3 (8)
C6—C1—C2—C3174.1 (9)O10—Tb1—N1—C136.3 (10)
C1—C2—C3—C40.4 (15)O9—Tb1—N1—C13109.1 (8)
C2—C3—C4—C53.7 (15)N2—Tb1—N1—C13−111.0 (8)
C2—C3—C4—C7−175.7 (10)C2—C1—N2—C52.2 (14)
C3—C4—C5—N2−5.2 (16)C6—C1—N2—C5−175.6 (9)
C7—C4—C5—N2174.2 (10)C2—C1—N2—Tb1179.6 (7)
N2—C1—C6—O2−170.7 (9)C6—C1—N2—Tb11.9 (10)
C2—C1—C6—O211.7 (15)C4—C5—N2—C12.3 (16)
N2—C1—C6—O110.2 (12)C4—C5—N2—Tb1−174.9 (8)
C2—C1—C6—O1−167.4 (9)O1—Tb1—N2—C1−7.5 (6)
C5—C4—C7—O4−178.2 (10)O5—Tb1—N2—C1134.4 (7)
C3—C4—C7—O41.1 (16)O8i—Tb1—N2—C1−137.6 (7)
C5—C4—C7—O3−0.4 (15)O3ii—Tb1—N2—C121.2 (9)
C3—C4—C7—O3178.9 (9)O10—Tb1—N2—C1−71.1 (7)
O6—C8—C9—N1−171.3 (9)O9—Tb1—N2—C1176.6 (6)
O5—C8—C9—N17.9 (12)N1—Tb1—N2—C167.8 (7)
O6—C8—C9—C1010.5 (13)O1—Tb1—N2—C5169.7 (9)
O5—C8—C9—C10−170.3 (9)O5—Tb1—N2—C5−48.3 (8)
N1—C9—C10—C11−3.6 (15)O8i—Tb1—N2—C539.7 (8)
C8—C9—C10—C11174.4 (9)O3ii—Tb1—N2—C5−161.5 (7)
C9—C10—C11—C123.5 (15)O10—Tb1—N2—C5106.2 (8)
C10—C11—C12—C13−0.9 (14)O9—Tb1—N2—C5−6.1 (10)
C10—C11—C12—C14−177.4 (9)N1—Tb1—N2—C5−115.0 (8)
C11—C12—C13—N1−1.9 (15)O2—C6—O1—Tb1161.3 (8)
C14—C12—C13—N1174.5 (10)C1—C6—O1—Tb1−19.6 (12)
C13—C12—C14—O7178.6 (11)O5—Tb1—O1—C6−30.8 (9)
C11—C12—C14—O7−5.3 (15)O8i—Tb1—O1—C670.2 (8)
C13—C12—C14—O8−1.4 (14)O3ii—Tb1—O1—C6−147.4 (8)
C11—C12—C14—O8174.7 (9)O10—Tb1—O1—C6138.9 (8)
C10—C9—N1—C131.0 (14)O9—Tb1—O1—C6−171.0 (7)
C8—C9—N1—C13−177.2 (8)N2—Tb1—O1—C615.4 (8)
C10—C9—N1—Tb1169.6 (7)N1—Tb1—O1—C6−73.5 (8)
C8—C9—N1—Tb1−8.6 (10)O4—C7—O3—Tb1i12.3 (17)
C12—C13—N1—C91.8 (16)C4—C7—O3—Tb1i−165.4 (7)
C12—C13—N1—Tb1−165.8 (8)O6—C8—O5—Tb1176.0 (8)
O1—Tb1—N1—C9147.5 (7)C9—C8—O5—Tb1−3.1 (12)
O5—Tb1—N1—C95.4 (6)O1—Tb1—O5—C8−46.5 (9)
O8i—Tb1—N1—C935.5 (9)O8i—Tb1—O5—C8−164.1 (8)
O3ii—Tb1—N1—C9−126.4 (7)O3ii—Tb1—O5—C851.8 (8)
O10—Tb1—N1—C9−161.3 (6)O10—Tb1—O5—C8157.8 (7)
O9—Tb1—N1—C9−58.6 (7)O9—Tb1—O5—C8117.3 (8)
N2—Tb1—N1—C981.4 (7)N2—Tb1—O5—C8−89.3 (8)
O1—Tb1—N1—C13−44.8 (8)N1—Tb1—O5—C8−0.9 (8)
O5—Tb1—N1—C13173.0 (9)O7—C14—O8—Tb1ii23.9 (17)
O8i—Tb1—N1—C13−156.8 (7)C12—C14—O8—Tb1ii−156.1 (7)
D—H···AD—HH···AD···AD—H···A
O1—H1···O12iii0.851.982.801 (12)162
O9—H91···O4ii0.851.862.706 (10)180
O9—H92···O4iv0.851.992.842 (11)180
O10—H101···O7i0.851.832.679 (11)179
O10—H102···O9iii0.852.153.000 (11)180
O11—H111···O50.852.002.851 (12)180
O11—H112···O2i0.851.912.758 (12)180
O12—H121···O6v0.852.153.000 (12)180
O12—H122···O6vi0.852.082.930 (13)180
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O12i0.851.982.801 (12)162
O9—H91⋯O4ii0.851.862.706 (10)180
O9—H92⋯O4iii0.851.992.842 (11)180
O10—H101⋯O7iv0.851.832.679 (11)179
O10—H102⋯O9i0.852.153.000 (11)180
O11—H111⋯O50.852.002.851 (12)180
O11—H112⋯O2iv0.851.912.758 (12)180
O12—H121⋯O6v0.852.153.000 (12)180
O12—H122⋯O6vi0.852.082.930 (13)180

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  3 in total

1.  New lanthanide hybrid as clustered infinite nanotunnel with 3D Ln-O-Ln framework and (3,4)-connected net.

Authors:  You-gui Huang; Ben-lai Wu; Da-qiang Yuan; Yan-qing Xu; Fei-long Jiang; Mao-chun Hong
Journal:  Inorg Chem       Date:  2007-02-19       Impact factor: 5.165

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  catena-Poly[[[diaqua-thulium(III)]-μ-6-carboxy-nicotinato-μ-pyridine-2,5-di-carboxyl-ato] dihydrate].

Authors:  Sheng Li; Yue Chen; Hong-Mei He; Yuan-Fang Ma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-19
  3 in total
  2 in total

1.  catena-Poly[diimidazolium [bis-(μ-pyridine-2,5-dicarboxyl-ato)bis-[diaqua-praseodymate(III)]]-bis-(μ-pyridine-2,5-dicarboxyl-ato)].

Authors:  Wenjun Zhang; Yanmei Chen; Tao Lei; Yahong Li; Wu Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-13

2.  catena-Poly[[[diaqua-thulium(III)]-μ-6-carboxy-nicotinato-μ-pyridine-2,5-di-carboxyl-ato] dihydrate].

Authors:  Sheng Li; Yue Chen; Hong-Mei He; Yuan-Fang Ma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-19
  2 in total

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