Literature DB >> 21754238

[5-Hydroxy-3-phenyl-1-(pyridin-2-yl)pyrazol-5-olato]diphenylboron.

Kee-In Lee, Hye-Rin Bin, Do-Min Lee, Chong-Hyeak Kim.   

Abstract

In the title compound, C(26)H(20)BN(3)O, the B atom has n class="Species">tetra-hedral geometry and is linked to two phenyl rings, the O atom of the hy-droxy-pyrazole ring and the N atom of the pyridinyl ring. A six-membered BOCNCN ring forms by coordination of the B atom and the pyridinyl N atom. The BOCNCN ring has an envelope conformation [dihedral angle = 36.7 (1)° between the planar ring atoms and the flap] with the B atom out of the plane. In the 1-(2-pyridin-yl)-3-phenyl-5-hy-droxy-pyrazole group, the pyridinyl ring, the phenyl ring and the pyrazole ring are almost coplanar: the pyrazole ring makes a dihedral angle of 9.56 (8)° with the pyridinyl ring and 17.68 (7)° with the phenyl ring. The crystal structure is stabilized by π-π stacking inter-actions involving the pyridinyl and pyrazole rings of centrosymmetrically related mol-ecules, with ring centroid separations of 3.54 (5) Å.

Entities:  

Year:  2011        PMID: 21754238      PMCID: PMC3099986          DOI: 10.1107/S1600536811010634

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general synthesis of diaryl­borinates, see: Hagan et al. (2000 ▶). For their synthesis and biological applications, see: Scorei & Popa (2010 ▶); Baker, Akama et al. (2006 ▶); Baker, Zhang et al. (2006 ▶). For luminescent organoboron compounds, see: Cui et al. (2005 ▶).

Experimental

Crystal data

C26H20BN3O M = 401.26 Triclinic, a = 9.7309 (1) Å b = 9.8830 (1) Å c = 11.2162 (1) Å α = 78.966 (1)° β = 81.795 (1)° γ = 79.993 (1)° V = 1035.91 (2) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 296 K 0.44 × 0.31 × 0.23 mm

Data collection

Bruker APEXII CCD diffractometer 19866 measured reflections 5044 independent reflections 3923 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.106 S = 1.03 5044 reflections 280 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.19 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAIn class="Chemical">NT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811010634/pk2309sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811010634/pk2309Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H20BN3OZ = 2
Mr = 401.26F(000) = 420
Triclinic, P1Dx = 1.286 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.7309 (1) ÅCell parameters from 8036 reflections
b = 9.8830 (1) Åθ = 2.6–27.8°
c = 11.2162 (1) ŵ = 0.08 mm1
α = 78.966 (1)°T = 296 K
β = 81.795 (1)°Block, pale-yellow
γ = 79.993 (1)°0.44 × 0.31 × 0.23 mm
V = 1035.91 (2) Å3
Bruker APEXII CCD diffractometer3923 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.019
graphiteθmax = 28.2°, θmin = 1.9°
φ and ω scansh = −12→12
19866 measured reflectionsk = −13→13
5044 independent reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.106H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0466P)2 + 0.1687P] where P = (Fo2 + 2Fc2)/3
5044 reflections(Δ/σ)max < 0.001
280 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.34223 (10)0.62671 (9)0.41391 (8)0.0395 (2)
N20.33209 (10)0.73403 (10)0.47857 (9)0.0425 (2)
C30.20130 (12)0.74313 (12)0.53352 (10)0.0409 (2)
C40.12724 (12)0.64242 (12)0.50700 (10)0.0430 (3)
H4A0.03510.62930.53540.052*
C50.22001 (11)0.56935 (11)0.43117 (9)0.0386 (2)
C60.46530 (11)0.58301 (11)0.34599 (9)0.0367 (2)
N70.45672 (9)0.49060 (9)0.27425 (8)0.0384 (2)
C80.57501 (13)0.44224 (13)0.20644 (11)0.0468 (3)
H8A0.57060.37660.15830.056*
C90.70060 (13)0.48605 (13)0.20602 (12)0.0510 (3)
H9A0.78000.45160.15780.061*
C100.70778 (13)0.58275 (13)0.27872 (12)0.0495 (3)
H10A0.79220.61450.27900.059*
C110.59005 (12)0.63144 (12)0.35022 (11)0.0443 (3)
H11A0.59360.69530.40030.053*
C120.15138 (13)0.85394 (12)0.60693 (10)0.0443 (3)
C130.24704 (15)0.92376 (14)0.64202 (13)0.0583 (3)
H13A0.34280.89490.62460.070*
C140.20174 (19)1.03558 (16)0.70253 (14)0.0709 (4)
H14A0.26681.08160.72550.085*
C150.05972 (19)1.07890 (16)0.72888 (14)0.0706 (4)
H15A0.02881.15550.76780.085*
C16−0.03519 (17)1.00873 (17)0.69750 (13)0.0681 (4)
H16A−0.13081.03680.71680.082*
C170.00942 (14)0.89644 (15)0.63743 (12)0.0568 (3)
H17A−0.05630.84900.61730.068*
O180.21775 (8)0.45786 (8)0.38208 (7)0.0434 (2)
B190.30310 (14)0.45262 (13)0.25937 (12)0.0403 (3)
C200.23337 (12)0.57188 (12)0.15691 (10)0.0415 (2)
C210.29568 (15)0.68316 (13)0.08918 (11)0.0519 (3)
H21A0.38630.69100.10150.062*
C220.22721 (18)0.78278 (15)0.00390 (13)0.0644 (4)
H22A0.27170.8562−0.03950.077*
C230.09335 (17)0.77314 (15)−0.01651 (13)0.0641 (4)
H23A0.04700.8398−0.07360.077*
C240.02870 (15)0.66393 (16)0.04825 (13)0.0595 (3)
H24A−0.06140.65630.03450.071*
C250.09721 (13)0.56573 (14)0.13358 (12)0.0512 (3)
H25A0.05150.49310.17700.061*
C260.32831 (12)0.29614 (12)0.23273 (11)0.0443 (3)
C270.33295 (15)0.26571 (15)0.11599 (13)0.0581 (3)
H27A0.31250.33810.05170.070*
C280.36740 (19)0.12997 (17)0.09288 (17)0.0760 (5)
H28A0.36980.11240.01400.091*
C290.39796 (18)0.02182 (16)0.18673 (19)0.0793 (5)
H29A0.4220−0.06900.17130.095*
C300.39304 (18)0.04790 (15)0.30304 (17)0.0729 (4)
H30A0.4132−0.02530.36680.087*
C310.35801 (15)0.18321 (13)0.32561 (14)0.0574 (3)
H31A0.35420.19930.40510.069*
U11U22U33U12U13U23
N10.0393 (5)0.0417 (5)0.0400 (5)−0.0107 (4)0.0002 (4)−0.0123 (4)
N20.0449 (5)0.0423 (5)0.0429 (5)−0.0092 (4)−0.0006 (4)−0.0145 (4)
C30.0414 (6)0.0433 (6)0.0367 (5)−0.0053 (5)−0.0029 (4)−0.0059 (5)
C40.0390 (6)0.0503 (6)0.0400 (6)−0.0101 (5)−0.0007 (4)−0.0082 (5)
C50.0409 (6)0.0411 (6)0.0348 (5)−0.0114 (4)−0.0039 (4)−0.0046 (4)
C60.0394 (6)0.0363 (5)0.0334 (5)−0.0067 (4)−0.0031 (4)−0.0037 (4)
N70.0410 (5)0.0390 (5)0.0358 (5)−0.0082 (4)−0.0018 (4)−0.0078 (4)
C80.0480 (7)0.0477 (6)0.0452 (6)−0.0070 (5)0.0017 (5)−0.0148 (5)
C90.0429 (6)0.0553 (7)0.0527 (7)−0.0059 (5)0.0055 (5)−0.0132 (6)
C100.0397 (6)0.0542 (7)0.0548 (7)−0.0129 (5)−0.0015 (5)−0.0075 (6)
C110.0433 (6)0.0468 (6)0.0452 (6)−0.0119 (5)−0.0033 (5)−0.0102 (5)
C120.0490 (6)0.0443 (6)0.0377 (6)−0.0037 (5)−0.0008 (5)−0.0083 (5)
C130.0558 (8)0.0589 (8)0.0641 (8)−0.0105 (6)0.0038 (6)−0.0259 (7)
C140.0851 (11)0.0630 (9)0.0709 (10)−0.0198 (8)0.0069 (8)−0.0306 (8)
C150.0924 (12)0.0559 (8)0.0577 (8)0.0035 (8)0.0082 (8)−0.0211 (7)
C160.0624 (9)0.0760 (10)0.0573 (8)0.0126 (8)0.0042 (7)−0.0194 (7)
C170.0503 (7)0.0692 (9)0.0492 (7)−0.0017 (6)−0.0006 (6)−0.0165 (6)
O180.0475 (5)0.0454 (4)0.0407 (4)−0.0170 (3)0.0010 (3)−0.0111 (3)
B190.0418 (7)0.0426 (7)0.0391 (6)−0.0122 (5)−0.0031 (5)−0.0094 (5)
C200.0468 (6)0.0417 (6)0.0384 (6)−0.0071 (5)−0.0029 (5)−0.0137 (5)
C210.0604 (8)0.0500 (7)0.0481 (7)−0.0154 (6)−0.0102 (6)−0.0058 (5)
C220.0899 (11)0.0516 (8)0.0517 (8)−0.0157 (7)−0.0138 (7)0.0003 (6)
C230.0821 (10)0.0590 (8)0.0488 (7)0.0073 (7)−0.0205 (7)−0.0096 (6)
C240.0532 (8)0.0710 (9)0.0558 (8)0.0020 (7)−0.0143 (6)−0.0191 (7)
C250.0484 (7)0.0551 (7)0.0515 (7)−0.0087 (6)−0.0056 (5)−0.0118 (6)
C260.0432 (6)0.0429 (6)0.0500 (6)−0.0119 (5)−0.0035 (5)−0.0120 (5)
C270.0684 (9)0.0546 (8)0.0551 (8)−0.0127 (6)−0.0027 (6)−0.0192 (6)
C280.0874 (11)0.0704 (10)0.0808 (11)−0.0198 (8)0.0051 (9)−0.0426 (9)
C290.0809 (11)0.0464 (8)0.1152 (15)−0.0155 (7)0.0041 (10)−0.0313 (9)
C300.0781 (11)0.0430 (7)0.0974 (12)−0.0147 (7)−0.0125 (9)−0.0047 (8)
C310.0664 (9)0.0458 (7)0.0626 (8)−0.0147 (6)−0.0107 (6)−0.0073 (6)
N1—C61.3736 (14)C16—C171.382 (2)
N1—N21.3778 (12)C16—H16A0.9300
N1—C51.3784 (14)C17—H17A0.9300
N2—C31.3286 (14)O18—B191.5077 (15)
C3—C41.4221 (16)B19—C261.6016 (17)
C3—C121.4695 (16)B19—C201.6113 (17)
C4—C51.3599 (16)C20—C211.3910 (17)
C4—H4A0.9300C20—C251.4003 (17)
C5—O181.3273 (13)C21—C221.3862 (19)
C6—N71.3474 (13)C21—H21A0.9300
C6—C111.3900 (15)C22—C231.377 (2)
N7—C81.3528 (14)C22—H22A0.9300
N7—B191.6412 (15)C23—C241.376 (2)
C8—C91.3647 (17)C23—H23A0.9300
C8—H8A0.9300C24—C251.3799 (19)
C9—C101.3860 (17)C24—H24A0.9300
C9—H9A0.9300C25—H25A0.9300
C10—C111.3715 (16)C26—C271.3915 (17)
C10—H10A0.9300C26—C311.3940 (18)
C11—H11A0.9300C27—C281.3897 (19)
C12—C171.3857 (18)C27—H27A0.9300
C12—C131.3890 (18)C28—C291.374 (3)
C13—C141.3815 (19)C28—H28A0.9300
C13—H13A0.9300C29—C301.370 (2)
C14—C151.381 (2)C29—H29A0.9300
C14—H14A0.9300C30—C311.3838 (19)
C15—C161.366 (2)C30—H30A0.9300
C15—H15A0.9300C31—H31A0.9300
C6—N1—N2121.20 (9)C16—C17—C12120.47 (14)
C6—N1—C5126.52 (9)C16—C17—H17A119.8
N2—N1—C5112.22 (9)C12—C17—H17A119.8
C3—N2—N1103.56 (9)C5—O18—B19115.85 (8)
N2—C3—C4112.44 (10)O18—B19—C26109.26 (9)
N2—C3—C12118.30 (10)O18—B19—C20110.01 (9)
C4—C3—C12129.22 (11)C26—B19—C20116.51 (9)
C5—C4—C3105.22 (10)O18—B19—N7105.44 (8)
C5—C4—H4A127.4C26—B19—N7107.22 (9)
C3—C4—H4A127.4C20—B19—N7107.79 (9)
O18—C5—C4134.33 (10)C21—C20—C25116.08 (11)
O18—C5—N1118.96 (9)C21—C20—B19125.87 (11)
C4—C5—N1106.55 (9)C25—C20—B19118.05 (10)
N7—C6—N1115.43 (9)C22—C21—C20122.18 (13)
N7—C6—C11122.21 (10)C22—C21—H21A118.9
N1—C6—C11122.36 (10)C20—C21—H21A118.9
C6—N7—C8118.15 (10)C23—C22—C21120.03 (14)
C6—N7—B19119.99 (9)C23—C22—H22A120.0
C8—N7—B19121.51 (9)C21—C22—H22A120.0
N7—C8—C9122.52 (11)C24—C23—C22119.41 (13)
N7—C8—H8A118.7C24—C23—H23A120.3
C9—C8—H8A118.7C22—C23—H23A120.3
C8—C9—C10118.84 (11)C23—C24—C25120.19 (13)
C8—C9—H9A120.6C23—C24—H24A119.9
C10—C9—H9A120.6C25—C24—H24A119.9
C11—C10—C9119.84 (11)C24—C25—C20122.10 (13)
C11—C10—H10A120.1C24—C25—H25A118.9
C9—C10—H10A120.1C20—C25—H25A118.9
C10—C11—C6118.42 (11)C27—C26—C31116.55 (12)
C10—C11—H11A120.8C27—C26—B19122.56 (11)
C6—C11—H11A120.8C31—C26—B19120.71 (11)
C17—C12—C13118.37 (12)C28—C27—C26121.72 (14)
C17—C12—C3121.57 (11)C28—C27—H27A119.1
C13—C12—C3119.98 (11)C26—C27—H27A119.1
C14—C13—C12120.83 (14)C29—C28—C27119.89 (15)
C14—C13—H13A119.6C29—C28—H28A120.1
C12—C13—H13A119.6C27—C28—H28A120.1
C15—C14—C13119.88 (15)C30—C29—C28119.93 (14)
C15—C14—H14A120.1C30—C29—H29A120.0
C13—C14—H14A120.1C28—C29—H29A120.0
C16—C15—C14119.73 (14)C29—C30—C31119.93 (15)
C16—C15—H15A120.1C29—C30—H30A120.0
C14—C15—H15A120.1C31—C30—H30A120.0
C15—C16—C17120.67 (14)C30—C31—C26121.98 (14)
C15—C16—H16A119.7C30—C31—H31A119.0
C17—C16—H16A119.7C26—C31—H31A119.0
C6—N1—N2—C3−178.54 (9)C4—C5—O18—B19149.85 (13)
C5—N1—N2—C3−1.17 (12)N1—C5—O18—B19−35.58 (14)
N1—N2—C3—C40.83 (12)C5—O18—B19—C26162.66 (9)
N1—N2—C3—C12−176.99 (9)C5—O18—B19—C20−68.27 (12)
N2—C3—C4—C5−0.21 (13)C5—O18—B19—N747.71 (12)
C12—C3—C4—C5177.31 (11)C6—N7—B19—O18−34.70 (13)
C3—C4—C5—O18174.52 (12)C8—N7—B19—O18152.14 (10)
C3—C4—C5—N1−0.52 (12)C6—N7—B19—C26−151.05 (9)
C6—N1—C5—O182.33 (16)C8—N7—B19—C2635.80 (13)
N2—N1—C5—O18−174.86 (9)C6—N7—B19—C2082.77 (11)
C6—N1—C5—C4178.28 (10)C8—N7—B19—C20−90.38 (12)
N2—N1—C5—C41.08 (12)O18—B19—C20—C21117.35 (12)
N2—N1—C6—N7−171.46 (9)C26—B19—C20—C21−117.62 (13)
C5—N1—C6—N711.57 (16)N7—B19—C20—C212.88 (15)
N2—N1—C6—C118.11 (16)O18—B19—C20—C25−61.86 (13)
C5—N1—C6—C11−168.85 (11)C26—B19—C20—C2563.16 (14)
N1—C6—N7—C8−179.10 (9)N7—B19—C20—C25−176.34 (9)
C11—C6—N7—C81.32 (16)C25—C20—C21—C220.30 (18)
N1—C6—N7—B197.52 (14)B19—C20—C21—C22−178.92 (12)
C11—C6—N7—B19−172.06 (10)C20—C21—C22—C23−0.3 (2)
C6—N7—C8—C9−1.63 (17)C21—C22—C23—C24−0.1 (2)
B19—N7—C8—C9171.64 (11)C22—C23—C24—C250.5 (2)
N7—C8—C9—C100.66 (19)C23—C24—C25—C20−0.6 (2)
C8—C9—C10—C110.64 (19)C21—C20—C25—C240.15 (18)
C9—C10—C11—C6−0.92 (18)B19—C20—C25—C24179.44 (11)
N7—C6—C11—C10−0.07 (17)O18—B19—C26—C27145.00 (12)
N1—C6—C11—C10−179.62 (10)C20—B19—C26—C2719.60 (17)
N2—C3—C12—C17161.16 (11)N7—B19—C26—C27−101.21 (13)
C4—C3—C12—C17−16.24 (19)O18—B19—C26—C31−40.18 (15)
N2—C3—C12—C13−15.47 (17)C20—B19—C26—C31−165.58 (11)
C4—C3—C12—C13167.14 (12)N7—B19—C26—C3173.61 (13)
C17—C12—C13—C14−2.0 (2)C31—C26—C27—C28−0.9 (2)
C3—C12—C13—C14174.76 (13)B19—C26—C27—C28174.12 (13)
C12—C13—C14—C150.1 (2)C26—C27—C28—C290.0 (2)
C13—C14—C15—C161.6 (2)C27—C28—C29—C300.6 (3)
C14—C15—C16—C17−1.3 (2)C28—C29—C30—C31−0.3 (3)
C15—C16—C17—C12−0.6 (2)C29—C30—C31—C26−0.6 (2)
C13—C12—C17—C162.2 (2)C27—C26—C31—C301.2 (2)
C3—C12—C17—C16−174.44 (12)B19—C26—C31—C30−173.89 (13)
  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Identification of a novel boron-containing antibacterial agent (AN0128) with anti-inflammatory activity, for the potential treatment of cutaneous diseases.

Authors:  Stephen J Baker; Tsutomu Akama; Yong-Kang Zhang; Vittorio Sauro; Chetan Pandit; Rajeshwar Singh; Maureen Kully; Jehangir Khan; Jacob J Plattner; Stephen J Benkovic; Ving Lee; Kirk R Maples
Journal:  Bioorg Med Chem Lett       Date:  2006-09-25       Impact factor: 2.823

3.  Discovery of a new boron-containing antifungal agent, 5-fluoro-1,3-dihydro-1-hydroxy-2,1- benzoxaborole (AN2690), for the potential treatment of onychomycosis.

Authors:  Stephen J Baker; Yong-Kang Zhang; Tsutomu Akama; Agnes Lau; Huchen Zhou; Vincent Hernandez; Weimin Mao; M R K Alley; Virginia Sanders; Jacob J Plattner
Journal:  J Med Chem       Date:  2006-07-27       Impact factor: 7.446

4.  Organoboron compounds with an 8-hydroxyquinolato chelate and its derivatives: substituent effects on structures and luminescence.

Authors:  Yi Cui; Qin-De Liu; Dong-Ren Bai; Wen-Li Jia; Ye Tao; Suning Wang
Journal:  Inorg Chem       Date:  2005-02-07       Impact factor: 5.165

Review 5.  Boron-containing compounds as preventive and chemotherapeutic agents for cancer.

Authors:  Romulus I Scorei; Radu Popa
Journal:  Anticancer Agents Med Chem       Date:  2010-05       Impact factor: 2.505

  5 in total
  1 in total

1.  One-pot synthesis of four-coordinate boron(III) complexes by the ligand-promoted organic group migration between boronic acids.

Authors:  Venkata S Sadu; Hye-Rin Bin; Do-Min Lee; Kee-In Lee
Journal:  Sci Rep       Date:  2017-03-21       Impact factor: 4.379

  1 in total

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