| Literature DB >> 21754231 |
Mohammad Arfan, Syed Hamid Hussain, M Nawaz Tahir, Jamal Rafique, Farzana Shaheen.
Abstract
The title compound, C(8)H(14)O(4), is an isolation product of the aerial parts of Senecio desfontanei. The acetic acid group is oriented at a dihedral angle of 48.03 (9)° with respect to the basal plane of the cyclo-hexane-1,4-diol chair. An intra-molecular O-H⋯O hydrogen bond generates an S(6) ring with an envelope conformation. In the crystal, mol-ecules are linked by O-H⋯O hydrogen bonds, resulting in R(3) (3)(20) ring motifs and C(2) O-H⋯O-H⋯O-H⋯ chains. Overall, a three-dimensional polymeric network arises. A C-H⋯O contact is also present.Entities:
Year: 2011 PMID: 21754231 PMCID: PMC3100032 DOI: 10.1107/S1600536811010397
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C8H14O4 | |
| Triclinic, | |
| Hall symbol: P 1 | Mo |
| Cell parameters from 933 reflections | |
| θ = 3.2–28.4° | |
| µ = 0.10 mm−1 | |
| α = 92.863 (2)° | |
| β = 97.223 (1)° | Needle, colorless |
| γ = 108.258 (2)° | 0.28 × 0.12 × 0.10 mm |
| Bruker Kappa APEXII CCD diffractometer | 1092 independent reflections |
| Radiation source: fine-focus sealed tube | 932 reflections with |
| graphite | |
| Detector resolution: 7.50 pixels mm-1 | θmax = 28.4°, θmin = 3.2° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 3664 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1092 reflections | (Δ/σ)max < 0.001 |
| 118 parameters | Δρmax = 0.22 e Å−3 |
| 0 restraints | Δρmin = −0.15 e Å−3 |
| Geometry. Bond distances, angles |
| Refinement. Refinement of |
| O1 | −0.1847 (3) | 0.0914 (3) | −0.1705 (3) | 0.0440 (5) | |
| O2 | 0.1853 (4) | 0.0521 (4) | −0.1685 (4) | 0.0773 (9) | |
| O3 | 0.6317 (3) | 0.6910 (3) | 0.6378 (3) | 0.0431 (5) | |
| O4 | 0.5902 (3) | 0.4332 (3) | −0.0313 (2) | 0.0359 (5) | |
| C1 | 0.0589 (4) | 0.1643 (4) | −0.1287 (3) | 0.0417 (7) | |
| C2 | 0.1589 (4) | 0.4007 (4) | −0.0290 (4) | 0.0401 (7) | |
| C3 | 0.4158 (4) | 0.4631 (3) | 0.1003 (3) | 0.0304 (6) | |
| C4 | 0.4181 (4) | 0.3231 (3) | 0.2851 (3) | 0.0382 (7) | |
| C5 | 0.6749 (5) | 0.3888 (4) | 0.4164 (4) | 0.0414 (7) | |
| C6 | 0.7759 (4) | 0.6356 (4) | 0.4899 (3) | 0.0391 (7) | |
| C7 | 0.7640 (4) | 0.7782 (4) | 0.3096 (4) | 0.0379 (7) | |
| C8 | 0.5067 (4) | 0.7087 (3) | 0.1812 (3) | 0.0341 (7) | |
| H1 | −0.238 (5) | −0.036 (5) | −0.231 (5) | 0.0528* | |
| H2A | 0.04354 | 0.42391 | 0.05989 | 0.0481* | |
| H2B | 0.16539 | 0.50069 | −0.13778 | 0.0481* | |
| H3 | 0.627 (5) | 0.610 (5) | 0.740 (5) | 0.0517* | |
| H4 | 0.556 (5) | 0.301 (5) | −0.077 (4) | 0.0430* | |
| H4A | 0.29895 | 0.34223 | 0.37184 | 0.0458* | |
| H4B | 0.36752 | 0.16699 | 0.23368 | 0.0458* | |
| H5A | 0.66520 | 0.30369 | 0.53680 | 0.0497* | |
| H5B | 0.78917 | 0.35099 | 0.33472 | 0.0497* | |
| H6 | 0.94896 | 0.67271 | 0.55625 | 0.0469* | |
| H7A | 0.80965 | 0.93295 | 0.36434 | 0.0455* | |
| H7B | 0.88352 | 0.76609 | 0.22023 | 0.0455* | |
| H8A | 0.51074 | 0.79800 | 0.06399 | 0.0409* | |
| H8B | 0.39057 | 0.73763 | 0.26622 | 0.0409* |
| O1 | 0.0402 (9) | 0.0388 (9) | 0.0490 (10) | 0.0100 (7) | 0.0025 (7) | −0.0051 (7) |
| O2 | 0.0475 (11) | 0.0688 (13) | 0.1084 (19) | 0.0249 (10) | −0.0090 (11) | −0.0466 (13) |
| O3 | 0.0573 (10) | 0.0406 (9) | 0.0293 (8) | 0.0122 (7) | 0.0094 (7) | 0.0006 (7) |
| O4 | 0.0380 (8) | 0.0414 (9) | 0.0320 (8) | 0.0167 (7) | 0.0106 (6) | 0.0001 (7) |
| C1 | 0.0380 (12) | 0.0476 (12) | 0.0379 (12) | 0.0158 (10) | −0.0004 (9) | −0.0073 (10) |
| C2 | 0.0357 (11) | 0.0408 (12) | 0.0448 (13) | 0.0158 (9) | 0.0042 (10) | −0.0056 (10) |
| C3 | 0.0343 (10) | 0.0324 (10) | 0.0265 (10) | 0.0126 (8) | 0.0087 (8) | 0.0002 (8) |
| C4 | 0.0492 (12) | 0.0295 (10) | 0.0346 (12) | 0.0093 (9) | 0.0103 (10) | 0.0032 (9) |
| C5 | 0.0574 (14) | 0.0424 (12) | 0.0315 (12) | 0.0253 (11) | 0.0073 (10) | 0.0079 (9) |
| C6 | 0.0381 (11) | 0.0468 (13) | 0.0322 (12) | 0.0151 (10) | 0.0025 (9) | 0.0006 (9) |
| C7 | 0.0422 (12) | 0.0336 (10) | 0.0352 (12) | 0.0069 (9) | 0.0097 (9) | 0.0024 (9) |
| C8 | 0.0412 (12) | 0.0311 (10) | 0.0322 (12) | 0.0138 (9) | 0.0076 (9) | 0.0045 (9) |
| O1—C1 | 1.313 (3) | C6—C7 | 1.524 (3) |
| O2—C1 | 1.205 (3) | C7—C8 | 1.520 (3) |
| O3—C6 | 1.441 (3) | C2—H2A | 0.9700 |
| O4—C3 | 1.443 (3) | C2—H2B | 0.9700 |
| O1—H1 | 0.83 (3) | C4—H4A | 0.9700 |
| O3—H3 | 0.86 (3) | C4—H4B | 0.9700 |
| O4—H4 | 0.83 (3) | C5—H5A | 0.9700 |
| C1—C2 | 1.507 (3) | C5—H5B | 0.9700 |
| C2—C3 | 1.523 (3) | C6—H6 | 0.9800 |
| C3—C8 | 1.523 (3) | C7—H7A | 0.9700 |
| C3—C4 | 1.530 (3) | C7—H7B | 0.9700 |
| C4—C5 | 1.527 (4) | C8—H8A | 0.9700 |
| C5—C6 | 1.519 (3) | C8—H8B | 0.9700 |
| C1—O1—H1 | 112 (2) | H2A—C2—H2B | 108.00 |
| C6—O3—H3 | 111 (2) | C3—C4—H4A | 109.00 |
| C3—O4—H4 | 112 (2) | C3—C4—H4B | 109.00 |
| O1—C1—O2 | 122.7 (2) | C5—C4—H4A | 109.00 |
| O1—C1—C2 | 112.7 (2) | C5—C4—H4B | 109.00 |
| O2—C1—C2 | 124.7 (2) | H4A—C4—H4B | 108.00 |
| C1—C2—C3 | 114.80 (19) | C4—C5—H5A | 109.00 |
| O4—C3—C8 | 106.40 (17) | C4—C5—H5B | 109.00 |
| O4—C3—C4 | 109.61 (17) | C6—C5—H5A | 109.00 |
| C4—C3—C8 | 109.02 (15) | C6—C5—H5B | 109.00 |
| C2—C3—C4 | 112.02 (18) | H5A—C5—H5B | 108.00 |
| C2—C3—C8 | 110.55 (18) | O3—C6—H6 | 109.00 |
| O4—C3—C2 | 109.09 (17) | C5—C6—H6 | 109.00 |
| C3—C4—C5 | 111.86 (18) | C7—C6—H6 | 109.00 |
| C4—C5—C6 | 112.5 (2) | C6—C7—H7A | 109.00 |
| O3—C6—C7 | 107.08 (19) | C6—C7—H7B | 109.00 |
| O3—C6—C5 | 110.6 (2) | C8—C7—H7A | 109.00 |
| C5—C6—C7 | 111.52 (18) | C8—C7—H7B | 109.00 |
| C6—C7—C8 | 112.19 (19) | H7A—C7—H7B | 108.00 |
| C3—C8—C7 | 112.17 (18) | C3—C8—H8A | 109.00 |
| C1—C2—H2A | 109.00 | C3—C8—H8B | 109.00 |
| C1—C2—H2B | 109.00 | C7—C8—H8A | 109.00 |
| C3—C2—H2A | 109.00 | C7—C8—H8B | 109.00 |
| C3—C2—H2B | 109.00 | H8A—C8—H8B | 108.00 |
| O1—C1—C2—C3 | 156.30 (19) | C2—C3—C8—C7 | −179.47 (19) |
| O2—C1—C2—C3 | −24.2 (3) | C4—C3—C8—C7 | 57.0 (2) |
| C1—C2—C3—O4 | 59.4 (2) | C3—C4—C5—C6 | 54.8 (3) |
| C1—C2—C3—C4 | −62.1 (2) | C4—C5—C6—O3 | 67.6 (2) |
| C1—C2—C3—C8 | 176.07 (18) | C4—C5—C6—C7 | −51.4 (3) |
| O4—C3—C4—C5 | 59.7 (2) | O3—C6—C7—C8 | −69.5 (2) |
| C2—C3—C4—C5 | −179.04 (19) | C5—C6—C7—C8 | 51.6 (3) |
| C8—C3—C4—C5 | −56.4 (2) | C6—C7—C8—C3 | −55.6 (2) |
| O4—C3—C8—C7 | −61.2 (2) |
| H··· | ||||
| O1—H1···O3i | 0.83 (3) | 1.78 (3) | 2.608 (3) | 177 (3) |
| O3—H3···O4ii | 0.86 (3) | 1.90 (3) | 2.756 (2) | 175 (3) |
| O4—H4···O1iii | 0.83 (3) | 2.39 (3) | 3.007 (3) | 131 (3) |
| O4—H4···O2 | 0.83 (3) | 2.20 (3) | 2.789 (3) | 128 (3) |
| C5—H5A···O1iv | 0.97 | 2.60 | 3.511 (3) | 157 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1⋯O3i | 0.83 (3) | 1.78 (3) | 2.608 (3) | 177 (3) |
| O3—H3⋯O4ii | 0.86 (3) | 1.90 (3) | 2.756 (2) | 175 (3) |
| O4—H4⋯O1iii | 0.83 (3) | 2.39 (3) | 3.007 (3) | 131 (3) |
| O4—H4⋯O2 | 0.83 (3) | 2.20 (3) | 2.789 (3) | 128 (3) |
| C5—H5 | 0.97 | 2.60 | 3.511 (3) | 157 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .