Literature DB >> 21754218

Absolute configuration of (2S)-4-(4-hy-droxy-phen-yl)butan-2-ol.

S Yousuf, S G Musharraf, I Khan, Hoong-Kun Fun.   

Abstract

The title compound, C(10)H(14)O(2), was isolated from the chloro-form extract of Taxus wallichiana Zucc. In the crystal, mol-ecules are linked by inter-molecular O-H⋯O hydrogen bonds, forming sheets parallel to (100). There are weak inter-molecular C-H⋯π inter-actions between the sheets.

Entities:  

Year:  2011        PMID: 21754218      PMCID: PMC3099928          DOI: 10.1107/S1600536811010026

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the isolation of the title compound, see: Fan et al. (1999 ▶). For the biological activity and medicinal uses of Taxus. wallichiana Zucc, see: Ahmed (1997 ▶); Baquar (1995 ▶); Kaul (1997 ▶); Nisar et al. (2008a ▶,b ▶; 2010 ▶); Prasain et al. (2001 ▶); Wani et al. (1971 ▶).

Experimental

Crystal data

C10H14O2 M = 166.21 Monoclinic, a = 7.2342 (2) Å b = 6.3815 (2) Å c = 9.9419 (4) Å β = 92.216 (2)° V = 458.63 (3) Å3 Z = 2 Cu Kα radiation μ = 0.66 mm−1 T = 100 K 0.39 × 0.12 × 0.05 mm

Data collection

Bruker SMART APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.784, T max = 0.966 4954 measured reflections 1455 independent reflections 1446 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.075 S = 1.08 1455 reflections 165 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.24 e Å−3 Absolute structure: Flack (1983 ▶), 579 Friedel pairs Flack parameter: −0.03 (17) Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811010026/lh5221sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811010026/lh5221Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H14O2F(000) = 180
Mr = 166.21Dx = 1.204 Mg m3
Monoclinic, P21Cu Kα radiation, λ = 1.54178 Å
Hall symbol: P 2ybCell parameters from 3477 reflections
a = 7.2342 (2) Åθ = 6.1–70.3°
b = 6.3815 (2) ŵ = 0.66 mm1
c = 9.9419 (4) ÅT = 100 K
β = 92.216 (2)°Block, colorles
V = 458.63 (3) Å30.39 × 0.12 × 0.05 mm
Z = 2
Bruker SMART APEXII DUO CCD area-detector diffractometer1455 independent reflections
Radiation source: fine-focus sealed tube1446 reflections with I > 2σ(I)
graphiteRint = 0.028
φ and ω scansθmax = 67.5°, θmin = 6.1°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −8→8
Tmin = 0.784, Tmax = 0.966k = −7→7
4954 measured reflectionsl = −11→10
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.029H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.075w = 1/[σ2(Fo2) + (0.0499P)2 + 0.0461P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max = 0.001
1455 reflectionsΔρmax = 0.19 e Å3
165 parametersΔρmin = −0.23 e Å3
1 restraintAbsolute structure: Flack (1983), 579 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.03 (17)
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. Cosier, J. & Glazer, A. M. (1986). J. Appl. Cryst.19, 105–107.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.33418 (12)0.03888 (15)0.11761 (9)0.0200 (2)
O20.33463 (12)0.33901 (17)0.93717 (9)0.0214 (2)
C10.22229 (17)0.3267 (2)0.42530 (13)0.0191 (3)
C20.25737 (17)0.2886 (2)0.29010 (14)0.0184 (3)
C30.29911 (15)0.08712 (19)0.24875 (13)0.0161 (3)
C40.30875 (17)−0.0757 (2)0.34234 (14)0.0191 (3)
C50.27631 (16)−0.0347 (2)0.47664 (13)0.0187 (3)
C60.23165 (16)0.1659 (2)0.52052 (13)0.0173 (3)
C70.19572 (19)0.2007 (2)0.66828 (14)0.0222 (3)
C80.20129 (16)0.4288 (2)0.71453 (13)0.0179 (3)
C90.18659 (17)0.4510 (2)0.86638 (13)0.0202 (3)
C100.1875 (2)0.6786 (3)0.91038 (16)0.0286 (4)
H10.192 (2)0.463 (3)0.4534 (16)0.019 (4)*
H20.245 (2)0.401 (3)0.2254 (19)0.026 (4)*
H40.339 (2)−0.216 (3)0.3145 (17)0.024 (4)*
H50.281 (2)−0.143 (3)0.5411 (18)0.025 (4)*
H7A0.076 (2)0.136 (3)0.6896 (18)0.027 (4)*
H7B0.293 (3)0.123 (3)0.720 (2)0.032 (5)*
H8A0.103 (3)0.501 (3)0.6728 (18)0.026 (4)*
H8B0.322 (2)0.494 (3)0.6865 (15)0.013 (4)*
H90.078 (2)0.383 (3)0.8913 (17)0.020 (4)*
H10A0.075 (3)0.755 (4)0.873 (2)0.044 (6)*
H10B0.304 (2)0.749 (3)0.8792 (17)0.021 (4)*
H10C0.183 (3)0.691 (3)1.011 (2)0.040 (5)*
H1O10.319 (3)0.151 (4)0.062 (2)0.043 (6)*
H1O20.444 (3)0.400 (3)0.920 (2)0.036 (5)*
U11U22U33U12U13U23
O10.0240 (4)0.0247 (5)0.0115 (5)0.0004 (4)0.0046 (3)−0.0002 (4)
O20.0213 (5)0.0303 (5)0.0125 (5)−0.0034 (4)0.0007 (3)0.0033 (4)
C10.0245 (6)0.0192 (7)0.0135 (6)−0.0005 (5)0.0016 (5)−0.0021 (5)
C20.0220 (6)0.0222 (8)0.0110 (6)−0.0008 (5)0.0003 (5)0.0023 (5)
C30.0138 (6)0.0244 (7)0.0101 (6)−0.0007 (5)0.0023 (4)−0.0021 (5)
C40.0188 (6)0.0195 (7)0.0193 (7)0.0006 (5)0.0038 (4)0.0005 (5)
C50.0201 (6)0.0218 (7)0.0142 (7)−0.0017 (5)0.0018 (4)0.0029 (5)
C60.0180 (6)0.0223 (7)0.0115 (7)−0.0027 (5)0.0003 (5)0.0003 (5)
C70.0304 (7)0.0262 (8)0.0102 (7)−0.0047 (6)0.0024 (5)−0.0003 (5)
C80.0172 (6)0.0247 (7)0.0119 (6)−0.0009 (5)0.0004 (4)0.0005 (5)
C90.0161 (6)0.0325 (8)0.0123 (7)−0.0010 (5)0.0024 (4)−0.0019 (6)
C100.0278 (7)0.0378 (9)0.0201 (8)0.0062 (7)−0.0012 (5)−0.0108 (6)
O1—C31.3728 (15)C5—H50.94 (2)
O1—H1O10.91 (3)C6—C71.5180 (17)
O2—C91.4473 (16)C7—C81.5265 (19)
O2—H1O20.90 (2)C7—H7A0.988 (19)
C1—C61.3959 (19)C7—H7B0.99 (2)
C1—C21.3988 (18)C8—C91.5241 (17)
C1—H10.943 (19)C8—H8A0.93 (2)
C2—C31.3865 (18)C8—H8B1.018 (15)
C2—H20.96 (2)C9—C101.517 (2)
C3—C41.3948 (18)C9—H90.938 (17)
C4—C51.390 (2)C10—H10A1.01 (2)
C4—H40.97 (2)C10—H10B1.013 (18)
C5—C61.3942 (19)C10—H10C1.01 (2)
C3—O1—H1O1112.1 (15)C8—C7—H7A110.2 (11)
C9—O2—H1O2109.6 (13)C6—C7—H7B106.5 (12)
C6—C1—C2121.21 (12)C8—C7—H7B108.1 (12)
C6—C1—H1118.9 (10)H7A—C7—H7B107.0 (15)
C2—C1—H1119.9 (10)C9—C8—C7112.65 (11)
C3—C2—C1119.72 (12)C9—C8—H8A108.3 (11)
C3—C2—H2120.5 (11)C7—C8—H8A109.0 (12)
C1—C2—H2119.7 (11)C9—C8—H8B109.0 (9)
O1—C3—C2122.67 (11)C7—C8—H8B108.8 (9)
O1—C3—C4117.40 (11)H8A—C8—H8B109.0 (14)
C2—C3—C4119.93 (11)O2—C9—C10109.73 (11)
C5—C4—C3119.64 (12)O2—C9—C8110.92 (10)
C5—C4—H4119.9 (11)C10—C9—C8112.02 (12)
C3—C4—H4120.4 (11)O2—C9—H9104.8 (11)
C4—C5—C6121.57 (12)C10—C9—H9111.0 (11)
C4—C5—H5120.8 (12)C8—C9—H9108.0 (10)
C6—C5—H5117.6 (12)C9—C10—H10A111.3 (13)
C5—C6—C1117.92 (12)C9—C10—H10B109.5 (11)
C5—C6—C7119.18 (11)H10A—C10—H10B109.7 (16)
C1—C6—C7122.90 (12)C9—C10—H10C111.3 (13)
C6—C7—C8115.31 (11)H10A—C10—H10C105.7 (17)
C6—C7—H7A109.3 (11)H10B—C10—H10C109.3 (15)
C6—C1—C2—C31.14 (18)C2—C1—C6—C5−0.29 (18)
C1—C2—C3—O1179.72 (10)C2—C1—C6—C7179.64 (11)
C1—C2—C3—C4−0.99 (17)C5—C6—C7—C8163.67 (11)
O1—C3—C4—C5179.33 (10)C1—C6—C7—C8−16.26 (18)
C2—C3—C4—C50.01 (17)C6—C7—C8—C9−173.32 (10)
C3—C4—C5—C60.86 (17)C7—C8—C9—O258.43 (14)
C4—C5—C6—C1−0.71 (17)C7—C8—C9—C10−178.58 (11)
C4—C5—C6—C7179.36 (11)
Cg1 is the centroid of the C1–C6 ring
D—H···AD—HH···AD···AD—H···A
O1—H1O1···O2i0.92 (2)1.72 (2)2.6247 (13)166 (2)
O2—H1O2···O1ii0.91 (2)1.88 (2)2.7869 (13)177.8 (19)
C8—H8A···Cg1iii0.93 (2)2.822 (15)3.7033 (13)158.1 (14)
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C1–C6 ring

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O1⋯O2i0.92 (2)1.72 (2)2.6247 (13)166 (2)
O2—H1O2⋯O1ii0.91 (2)1.88 (2)2.7869 (13)177.8 (19)
C8—H8ACg1iii0.93 (2)2.822 (15)3.7033 (13)158.1 (14)

Symmetry codes: (i) ; (ii) ; (iii) .

  7 in total

1.  Antifungal and antibacterial activities of Taxus wallichiana Zucc.

Authors:  Muhammad Nisar; Inamullah Khan; Bashir Ahmad; Ihsan Ali; Waqar Ahmad; Muhammad Iqbal Choudhary
Journal:  J Enzyme Inhib Med Chem       Date:  2008-04       Impact factor: 5.051

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Plant antitumor agents. VI. The isolation and structure of taxol, a novel antileukemic and antitumor agent from Taxus brevifolia.

Authors:  M C Wani; H L Taylor; M E Wall; P Coggon; A T McPhail
Journal:  J Am Chem Soc       Date:  1971-05-05       Impact factor: 15.419

4.  Taxines from the needles of Taxus wallichiana.

Authors:  J K Prasain; P Stefanowicz; T Kiyota; F Habeichi; Y Konishi
Journal:  Phytochemistry       Date:  2001-12       Impact factor: 4.072

5.  4-Deacetylbaccatin III: a proposed biosynthetic precursor of paclitaxel from the bark of Taxus wallichiana.

Authors:  Muhammad Nisar; Mughal Qayum; Achyut Adhikari; Inamullah Khan; Waqar Ahamad Kaleem; Zulfiqar Ali; M Iqbal Choudhary
Journal:  Nat Prod Commun       Date:  2010-11       Impact factor: 0.986

6.  Anticonvulsant, analgesic and antipyretic activities of Taxus wallichiana Zucc.

Authors:  Muhammad Nisar; Inamullah Khan; Shabana Usman Simjee; Anwarul Hasan Gilani; Humera Perveen
Journal:  J Ethnopharmacol       Date:  2008-01-20       Impact factor: 4.360

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total

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