Literature DB >> 21754130

4-[2-(Benzyl-sulfan-yl)acet-yl]-3,4-dihydro-quinoxalin-2(1H)-one.

Waqar Nasir, Munawar Ali Munawar, Sohail Nadeem, Rana Amjad, Ahmad Adnan.   

Abstract

In the title compound, C(17)H(16)N(2)O(2)S, the pyrazinone ring is non-planar (r.m.s. deviation = 0.1595 Å), with maximum deviations for the 4-position N atom and the adjacent non-fused-ring C atom of 0.2557 (15) and -0.2118 (16) Å, respectively. The dihedral angle between the benzyl ring and n class="Chemical">pyrazinone rings is 30.45 (18)°. Inter-molecular N-H⋯O hydrogen-bonding inter-actions forms inversion dimers which lead to eight-membered R(2) (2)(8) ring motifs. The dimers are further connected by C-H⋯O inter-actions.

Entities:  

Year:  2011        PMID: 21754130      PMCID: PMC3099835          DOI: 10.1107/S1600536811008178

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of quinoxalines, see: Ali et al. (2000 ▶); Moustafa & Yameda (2001 ▶). For related structures see: Nasir et al. (2009) ▶. For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C17H16N2O2S M = 312.38 Orthorhombic, a = 13.9502 (8) Å b = 32.2588 (17) Å c = 6.9728 (3) Å V = 3137.9 (3) Å3 Z = 8 Mo Kα radiation μ = 0.22 mm−1 T = 296 K 0.47 × 0.23 × 0.07 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.906, T max = 0.985 16363 measured reflections 3892 independent reflections 2412 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.183 S = 1.00 3889 reflections 203 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.27 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811008178/hg2799sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811008178/hg2799Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H16N2O2SF(000) = 1312
Mr = 312.38Dx = 1.322 Mg m3
Orthorhombic, PccnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ab 2acCell parameters from 2915 reflections
a = 13.9502 (8) Åθ = 3.2–23.1°
b = 32.2588 (17) ŵ = 0.22 mm1
c = 6.9728 (3) ÅT = 296 K
V = 3137.9 (3) Å3Plate, colorless
Z = 80.47 × 0.23 × 0.07 mm
Bruker Kappa APEXII CCD diffractometer3892 independent reflections
Radiation source: fine-focus sealed tube2412 reflections with I > 2σ(I)
graphiteRint = 0.044
φ and ω scansθmax = 28.3°, θmin = 1.3°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −18→17
Tmin = 0.906, Tmax = 0.985k = −23→43
16363 measured reflectionsl = −9→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.183H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.108P)2 + 0.1052P] where P = (Fo2 + 2Fc2)/3
3889 reflections(Δ/σ)max = 0.001
203 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.67947 (5)0.701430 (18)0.13947 (11)0.0539 (3)
O40.77529 (11)0.61610 (5)0.1173 (2)0.0439 (4)
N10.63517 (13)0.58234 (5)0.0968 (3)0.0364 (4)
O30.63199 (12)0.50899 (5)0.4824 (2)0.0530 (5)
C10.47960 (15)0.55216 (6)0.1309 (3)0.0377 (5)
C90.69061 (15)0.61743 (6)0.0743 (3)0.0331 (5)
C80.60499 (16)0.52927 (7)0.3446 (3)0.0399 (5)
C70.67595 (15)0.54813 (7)0.2064 (3)0.0400 (5)
H7A0.73110.55810.27750.048*
H7B0.69800.52690.11840.048*
N20.51165 (14)0.53532 (6)0.3046 (3)0.0442 (5)
C100.64388 (16)0.65674 (7)0.0037 (3)0.0394 (5)
H10A0.57480.65370.01120.047*
H10B0.66070.6610−0.12990.047*
C50.51272 (19)0.58963 (8)−0.1586 (4)0.0490 (6)
H50.55570.6032−0.23910.059*
C120.50134 (19)0.69134 (8)0.3071 (4)0.0514 (6)
C60.54236 (15)0.57563 (6)0.0199 (3)0.0364 (5)
C30.35632 (19)0.56161 (9)−0.1015 (4)0.0581 (7)
H30.29310.5579−0.14020.070*
C20.38689 (17)0.54535 (7)0.0697 (4)0.0477 (6)
H20.34510.52970.14450.057*
C110.6058 (2)0.69568 (9)0.3512 (4)0.0577 (7)
H11A0.62690.67140.42170.069*
H11B0.61500.71970.43320.069*
C40.4191 (2)0.58341 (8)−0.2165 (4)0.0592 (7)
H40.39830.5940−0.33340.071*
C130.4534 (3)0.65588 (11)0.3446 (5)0.0776 (9)
H130.48530.63390.40250.093*
C160.3583 (3)0.7183 (2)0.1691 (9)0.156 (3)
H160.32670.73960.10540.188*
C140.3569 (3)0.65185 (15)0.2976 (7)0.1123 (16)
H140.32400.62750.32540.135*
C170.4533 (2)0.72278 (13)0.2194 (7)0.1095 (15)
H170.48490.74750.19320.131*
C150.3119 (3)0.6836 (2)0.2115 (7)0.133 (2)
H150.24730.68120.18110.160*
H1N0.471 (2)0.5207 (9)0.367 (4)0.060 (8)*
U11U22U33U12U13U23
S10.0418 (4)0.0307 (3)0.0892 (6)−0.0038 (2)0.0018 (3)−0.0011 (3)
O40.0330 (9)0.0376 (8)0.0611 (10)−0.0068 (7)−0.0027 (7)0.0045 (7)
N10.0310 (10)0.0358 (10)0.0424 (10)−0.0056 (8)−0.0005 (8)0.0066 (8)
O30.0451 (10)0.0577 (11)0.0561 (11)−0.0119 (8)−0.0068 (8)0.0193 (9)
C10.0321 (11)0.0339 (11)0.0473 (13)−0.0016 (9)0.0012 (10)0.0006 (10)
C90.0322 (11)0.0316 (10)0.0356 (11)−0.0031 (9)0.0043 (9)−0.0004 (9)
C80.0380 (12)0.0360 (11)0.0456 (13)−0.0075 (10)0.0005 (10)0.0048 (10)
C70.0315 (11)0.0358 (11)0.0527 (13)−0.0028 (9)0.0015 (10)0.0092 (10)
N20.0336 (11)0.0494 (11)0.0495 (12)−0.0061 (9)0.0057 (9)0.0140 (10)
C100.0355 (12)0.0381 (12)0.0447 (12)−0.0009 (10)0.0063 (10)0.0042 (10)
C50.0462 (15)0.0544 (15)0.0464 (14)−0.0109 (12)−0.0015 (11)0.0093 (11)
C120.0476 (15)0.0572 (15)0.0495 (14)0.0108 (12)0.0027 (11)−0.0060 (12)
C60.0302 (11)0.0332 (10)0.0459 (12)−0.0037 (9)−0.0009 (9)−0.0002 (9)
C30.0391 (13)0.0587 (16)0.0765 (19)−0.0109 (13)−0.0155 (13)−0.0009 (14)
C20.0338 (12)0.0452 (13)0.0642 (16)−0.0086 (11)0.0019 (11)0.0022 (12)
C110.0540 (17)0.0592 (16)0.0599 (16)0.0099 (13)−0.0070 (13)−0.0154 (13)
C40.0557 (17)0.0663 (17)0.0558 (16)−0.0097 (14)−0.0181 (13)0.0063 (13)
C130.068 (2)0.075 (2)0.090 (2)−0.0013 (18)0.0167 (18)−0.0014 (18)
C160.062 (3)0.211 (6)0.197 (6)0.044 (3)0.011 (3)0.093 (5)
C140.076 (3)0.135 (4)0.126 (4)−0.044 (3)0.031 (3)−0.041 (3)
C170.053 (2)0.099 (3)0.176 (4)0.028 (2)0.007 (2)0.054 (3)
C150.050 (2)0.241 (7)0.109 (4)0.011 (3)−0.010 (2)−0.007 (4)
S1—C101.795 (2)C5—H50.9300
S1—C111.808 (3)C12—C131.351 (4)
O4—C91.219 (3)C12—C171.361 (4)
N1—C91.380 (3)C12—C111.496 (4)
N1—C61.418 (3)C3—C21.372 (4)
N1—C71.458 (3)C3—C41.380 (4)
O3—C81.222 (3)C3—H30.9300
C1—C21.380 (3)C2—H20.9300
C1—C61.393 (3)C11—H11A0.9700
C1—N21.400 (3)C11—H11B0.9700
C9—C101.508 (3)C4—H40.9300
C8—N21.346 (3)C13—C141.392 (5)
C8—C71.509 (3)C13—H130.9300
C7—H7A0.9700C16—C151.327 (8)
C7—H7B0.9700C16—C171.379 (6)
N2—H1N0.85 (3)C16—H160.9300
C10—H10A0.9700C14—C151.342 (7)
C10—H10B0.9700C14—H140.9300
C5—C41.382 (4)C17—H170.9300
C5—C61.387 (3)C15—H150.9300
C10—S1—C11101.02 (12)C5—C6—C1119.2 (2)
C9—N1—C6126.45 (18)C5—C6—N1124.2 (2)
C9—N1—C7117.51 (17)C1—C6—N1116.55 (19)
C6—N1—C7116.03 (17)C2—C3—C4120.2 (2)
C2—C1—C6120.3 (2)C2—C3—H3119.9
C2—C1—N2120.3 (2)C4—C3—H3119.9
C6—C1—N2119.4 (2)C3—C2—C1120.0 (2)
O4—C9—N1119.08 (19)C3—C2—H2120.0
O4—C9—C10121.91 (19)C1—C2—H2120.0
N1—C9—C10118.98 (19)C12—C11—S1113.29 (19)
O3—C8—N2122.6 (2)C12—C11—H11A108.9
O3—C8—C7121.0 (2)S1—C11—H11A108.9
N2—C8—C7116.3 (2)C12—C11—H11B108.9
N1—C7—C8112.57 (18)S1—C11—H11B108.9
N1—C7—H7A109.1H11A—C11—H11B107.7
C8—C7—H7A109.1C3—C4—C5120.3 (3)
N1—C7—H7B109.1C3—C4—H4119.9
C8—C7—H7B109.1C5—C4—H4119.9
H7A—C7—H7B107.8C12—C13—C14120.8 (4)
C8—N2—C1123.0 (2)C12—C13—H13119.6
C8—N2—H1N117.0 (19)C14—C13—H13119.6
C1—N2—H1N116.3 (19)C15—C16—C17120.0 (5)
C9—C10—S1112.54 (16)C15—C16—H16120.0
C9—C10—H10A109.1C17—C16—H16120.0
S1—C10—H10A109.1C15—C14—C13119.1 (4)
C9—C10—H10B109.1C15—C14—H14120.4
S1—C10—H10B109.1C13—C14—H14120.4
H10A—C10—H10B107.8C12—C17—C16120.7 (4)
C4—C5—C6119.8 (2)C12—C17—H17119.7
C4—C5—H5120.1C16—C17—H17119.7
C6—C5—H5120.1C16—C15—C14121.1 (4)
C13—C12—C17118.3 (3)C16—C15—H15119.5
C13—C12—C11121.4 (3)C14—C15—H15119.5
C17—C12—C11120.2 (3)
C6—N1—C9—O4−166.4 (2)C9—N1—C6—C536.4 (3)
C7—N1—C9—O412.1 (3)C7—N1—C6—C5−142.1 (2)
C6—N1—C9—C1015.7 (3)C9—N1—C6—C1−145.9 (2)
C7—N1—C9—C10−165.86 (19)C7—N1—C6—C135.6 (3)
C9—N1—C7—C8136.4 (2)C4—C3—C2—C12.5 (4)
C6—N1—C7—C8−44.9 (3)C6—C1—C2—C30.2 (4)
O3—C8—C7—N1−159.2 (2)N2—C1—C2—C3−179.4 (2)
N2—C8—C7—N122.2 (3)C13—C12—C11—S1114.1 (3)
O3—C8—N2—C1−168.6 (2)C17—C12—C11—S1−62.9 (4)
C7—C8—N2—C110.0 (3)C10—S1—C11—C12−54.1 (2)
C2—C1—N2—C8158.4 (2)C2—C3—C4—C5−1.1 (4)
C6—C1—N2—C8−21.2 (3)C6—C5—C4—C3−3.1 (4)
O4—C9—C10—S1−43.2 (3)C17—C12—C13—C14−1.1 (5)
N1—C9—C10—S1134.71 (18)C11—C12—C13—C14−178.1 (3)
C11—S1—C10—C9−78.50 (18)C12—C13—C14—C151.0 (6)
C4—C5—C6—C15.8 (4)C13—C12—C17—C16−0.4 (6)
C4—C5—C6—N1−176.6 (2)C11—C12—C17—C16176.6 (4)
C2—C1—C6—C5−4.4 (3)C15—C16—C17—C122.1 (9)
N2—C1—C6—C5175.2 (2)C17—C16—C15—C14−2.3 (10)
C2—C1—C6—N1177.8 (2)C13—C14—C15—C160.7 (8)
N2—C1—C6—N1−2.6 (3)
D—H···AD—HH···AD···AD—H···A
C5—H5···O4i0.932.603.452 (3)153
C10—H10B···O4i0.972.453.202 (3)134
N2—H1N···O3ii0.85 (3)2.02 (3)2.875 (3)175 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C5—H5⋯O4i0.932.603.452 (3)153
C10—H10B⋯O4i0.972.453.202 (3)134
N2—H1N⋯O3ii0.85 (3)2.02 (3)2.875 (3)175 (3)

Symmetry codes: (i) ; (ii) .

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1.  A short history of SHELX.

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2.  4-[(2,5-Dimethyl-anilino)acet-yl]-3,4-di-hydro-quinoxalin-2(1H)-one.

Authors:  Waqar Nasir; Munawar Ali Munawar; Saeed Ahmad; Sohail Nadeem; Muhammad Shahid
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-07

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