Literature DB >> 21754114

2'-Carb-oxy-meth-oxy-4,4'-bis-(3-methyl-but-2-en-yloxy)chalcone.

Yan-Shu Liang, Shuai Mu, Jing-Yang Wang, Deng-Ke Liu.   

Abstract

In the title compound, C(27)H(30)O(6), also known as sofalcone, an anti-ulcer agent used for the protection of gastric mucosa-, the two benzene rings form a dihedral angle of 6.78 (11)°. Inter-molecular O-H⋯O hydrogen bonds link the mol-ecules into centrosymmetric dimers, which are further linked by weak C-H⋯O inter-actions into ribbons propagated in [2[Formula: see text]0]. Finally, π-π inter-actions between the benzene rings [centroid-centroid distance = 3.583 (13) Å] stabilize the crystal packing.

Entities:  

Year:  2011        PMID: 21754114      PMCID: PMC3099935          DOI: 10.1107/S1600536811008300

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the bioactivity and applications of the title compound, see: Tanaka et al. (2009 ▶). For a related structure, see: Cheng et al. (2007 ▶). For the preparation of the title compound, see: Kyogoku et al. (1978 ▶, 1979 ▶); Liu et al. (2009 ▶). For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C27H30O6 M = 450.51 Triclinic, a = 7.4496 (15) Å b = 12.195 (2) Å c = 13.085 (3) Å α = 88.39 (3)° β = 78.53 (3)° γ = 86.99 (3)° V = 1163.3 (4) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 113 K 0.12 × 0.10 × 0.08 mm

Data collection

Rigaku Saturn diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005 ▶) T min = 0.989, T max = 0.993 11767 measured reflections 4097 independent reflections 2371 reflections with I > 2σ(I) R int = 0.078

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.116 S = 0.92 4097 reflections 303 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811008300/cv5057sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811008300/cv5057Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C27H30O6Z = 2
Mr = 450.51F(000) = 480
Triclinic, P1Dx = 1.286 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.4496 (15) ÅCell parameters from 3474 reflections
b = 12.195 (2) Åθ = 2.3–27.9°
c = 13.085 (3) ŵ = 0.09 mm1
α = 88.39 (3)°T = 113 K
β = 78.53 (3)°Prism, yellow
γ = 86.99 (3)°0.12 × 0.10 × 0.08 mm
V = 1163.3 (4) Å3
Rigaku Saturn diffractometer4097 independent reflections
Radiation source: rotating anode2371 reflections with I > 2σ(I)
confocalRint = 0.078
ω scansθmax = 25.0°, θmin = 1.7°
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005)h = −8→8
Tmin = 0.989, Tmax = 0.993k = −14→14
11767 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.116H-atom parameters constrained
S = 0.92w = 1/[σ2(Fo2) + (0.0421P)2] where P = (Fo2 + 2Fc2)/3
4097 reflections(Δ/σ)max < 0.001
303 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.45375 (16)−0.07058 (11)1.21292 (10)0.0295 (4)
O20.39551 (15)0.25262 (10)1.01329 (10)0.0245 (3)
O30.19896 (16)0.42849 (11)0.96442 (10)0.0275 (4)
O4−0.04272 (16)0.38360 (11)1.08729 (10)0.0281 (4)
H4−0.08690.44221.06920.042*
O50.96148 (17)0.22153 (11)0.88715 (11)0.0325 (4)
O60.52436 (16)0.79502 (10)0.64049 (10)0.0290 (4)
C10.6943 (2)0.16654 (15)1.00089 (14)0.0206 (4)
C20.7978 (2)0.07896 (15)1.03331 (15)0.0232 (5)
H20.92310.07501.00590.028*
C30.7285 (2)−0.00236 (16)1.10304 (14)0.0239 (5)
H30.8045−0.05911.12190.029*
C40.5426 (2)0.00300 (15)1.14398 (14)0.0225 (5)
C50.4324 (2)0.08869 (15)1.11472 (14)0.0228 (5)
H50.30750.09211.14290.027*
C60.5055 (2)0.16926 (15)1.04415 (14)0.0214 (5)
C70.5612 (3)−0.16271 (16)1.24391 (16)0.0302 (5)
H7A0.6645−0.13751.27010.036*
H7B0.6075−0.20981.18500.036*
C80.4368 (3)−0.22398 (16)1.32763 (15)0.0285 (5)
H80.3166−0.19631.34760.034*
C90.4851 (3)−0.31441 (16)1.37529 (15)0.0291 (5)
C100.6741 (3)−0.36753 (17)1.35051 (17)0.0428 (6)
H10A0.7473−0.32801.29410.064*
H10B0.6672−0.44211.33060.064*
H10C0.7290−0.36651.41090.064*
C110.3521 (3)−0.37149 (18)1.45850 (16)0.0434 (6)
H11A0.2355−0.33161.46940.065*
H11B0.3977−0.37471.52220.065*
H11C0.3381−0.44471.43710.065*
C120.2107 (2)0.26291 (15)1.06756 (15)0.0234 (5)
H12A0.20650.26411.14210.028*
H12B0.14420.20081.05300.028*
C130.1247 (2)0.36717 (15)1.03284 (15)0.0223 (5)
C140.7976 (2)0.24378 (15)0.92286 (15)0.0222 (5)
C150.7105 (3)0.34591 (15)0.88957 (15)0.0250 (5)
H150.58960.36480.92020.030*
C160.8002 (3)0.41176 (15)0.81682 (15)0.0246 (5)
H160.92210.39140.78990.030*
C170.7269 (3)0.51316 (15)0.77462 (15)0.0238 (5)
C180.5463 (2)0.55068 (15)0.80792 (15)0.0265 (5)
H180.47150.51190.86050.032*
C190.4741 (3)0.64361 (16)0.76561 (15)0.0263 (5)
H190.35220.66650.78930.032*
C200.5842 (3)0.70289 (15)0.68747 (15)0.0237 (5)
C210.7656 (3)0.66794 (16)0.65364 (15)0.0267 (5)
H210.84060.70750.60170.032*
C220.8355 (3)0.57460 (16)0.69672 (15)0.0274 (5)
H220.95770.55210.67330.033*
C230.3328 (2)0.82802 (16)0.67028 (15)0.0291 (5)
H23A0.30080.84070.74470.035*
H23B0.25760.77100.65370.035*
C240.3013 (3)0.93145 (17)0.61086 (16)0.0361 (6)
H240.39690.95330.55830.043*
C250.1492 (3)0.99420 (16)0.62685 (15)0.0293 (5)
C260.1281 (3)1.09886 (17)0.56591 (17)0.0453 (7)
H26A0.23861.10960.51550.068*
H26B0.10481.15960.61260.068*
H26C0.02731.09420.53080.068*
C27−0.0158 (3)0.96821 (18)0.70712 (16)0.0382 (6)
H27A0.00930.90200.74420.057*
H27B−0.11730.95840.67370.057*
H27C−0.04571.02760.75520.057*
U11U22U33U12U13U23
O10.0232 (7)0.0239 (8)0.0385 (9)0.0037 (6)−0.0028 (6)0.0157 (7)
O20.0173 (7)0.0230 (8)0.0315 (8)0.0048 (6)−0.0031 (6)0.0071 (6)
O30.0187 (7)0.0253 (8)0.0359 (8)0.0027 (6)−0.0011 (6)0.0096 (7)
O40.0198 (8)0.0236 (9)0.0375 (9)0.0061 (6)−0.0010 (6)0.0096 (7)
O50.0204 (8)0.0287 (9)0.0441 (9)0.0042 (7)0.0007 (7)0.0110 (7)
O60.0252 (8)0.0252 (8)0.0331 (8)0.0073 (6)−0.0015 (6)0.0106 (6)
C10.0188 (10)0.0176 (11)0.0252 (11)0.0017 (8)−0.0048 (8)0.0007 (9)
C20.0160 (10)0.0222 (12)0.0310 (12)0.0007 (9)−0.0045 (9)0.0023 (9)
C30.0254 (11)0.0167 (11)0.0299 (12)0.0042 (9)−0.0086 (9)0.0053 (9)
C40.0251 (11)0.0180 (11)0.0242 (11)−0.0012 (9)−0.0051 (9)0.0046 (9)
C50.0186 (10)0.0224 (12)0.0267 (11)0.0023 (9)−0.0045 (8)0.0034 (9)
C60.0233 (11)0.0168 (11)0.0251 (11)0.0044 (9)−0.0089 (9)0.0011 (9)
C70.0318 (12)0.0213 (12)0.0367 (13)0.0062 (9)−0.0081 (10)0.0077 (10)
C80.0327 (12)0.0244 (13)0.0274 (12)−0.0007 (10)−0.0041 (9)0.0008 (10)
C90.0424 (13)0.0218 (12)0.0242 (11)−0.0040 (10)−0.0089 (10)0.0018 (9)
C100.0554 (15)0.0256 (14)0.0482 (15)0.0045 (11)−0.0152 (12)0.0100 (11)
C110.0607 (16)0.0346 (15)0.0361 (13)−0.0087 (12)−0.0123 (12)0.0117 (11)
C120.0157 (10)0.0236 (12)0.0295 (11)0.0020 (9)−0.0024 (8)0.0024 (9)
C130.0166 (11)0.0220 (12)0.0285 (11)0.0006 (9)−0.0055 (9)0.0012 (9)
C140.0221 (11)0.0182 (11)0.0264 (11)0.0005 (9)−0.0059 (9)0.0014 (9)
C150.0215 (11)0.0206 (12)0.0319 (12)0.0015 (9)−0.0042 (9)0.0044 (9)
C160.0216 (11)0.0211 (12)0.0300 (12)0.0025 (9)−0.0036 (9)0.0023 (9)
C170.0260 (11)0.0196 (12)0.0256 (11)0.0007 (9)−0.0054 (9)0.0020 (9)
C180.0253 (11)0.0220 (12)0.0304 (12)0.0001 (9)−0.0032 (9)0.0081 (9)
C190.0217 (11)0.0237 (12)0.0316 (12)0.0019 (9)−0.0023 (9)0.0045 (9)
C200.0288 (11)0.0182 (11)0.0242 (11)0.0019 (9)−0.0062 (9)0.0021 (9)
C210.0276 (11)0.0243 (12)0.0264 (11)0.0000 (9)−0.0023 (9)0.0056 (9)
C220.0221 (11)0.0256 (12)0.0322 (12)0.0030 (9)−0.0016 (9)0.0029 (10)
C230.0243 (11)0.0261 (12)0.0334 (12)0.0071 (9)0.0000 (9)0.0065 (10)
C240.0302 (12)0.0335 (14)0.0387 (13)0.0049 (11)0.0032 (10)0.0158 (11)
C250.0268 (12)0.0255 (12)0.0344 (12)0.0021 (9)−0.0048 (9)0.0081 (10)
C260.0361 (13)0.0385 (15)0.0585 (16)0.0036 (11)−0.0067 (12)0.0212 (12)
C270.0306 (12)0.0448 (15)0.0375 (13)0.0069 (11)−0.0061 (10)0.0074 (11)
O1—C41.355 (2)C11—H11C0.9600
O1—C71.441 (2)C12—C131.494 (2)
O2—C61.374 (2)C12—H12A0.9700
O2—C121.419 (2)C12—H12B0.9700
O3—C131.215 (2)C14—C151.469 (3)
O4—C131.316 (2)C15—C161.326 (3)
O4—H40.8200C15—H150.9300
O5—C141.236 (2)C16—C171.464 (3)
O6—C201.362 (2)C16—H160.9300
O6—C231.442 (2)C17—C181.387 (2)
C1—C21.391 (2)C17—C221.396 (3)
C1—C61.407 (2)C18—C191.378 (3)
C1—C141.494 (3)C18—H180.9300
C2—C31.378 (3)C19—C201.389 (3)
C2—H20.9300C19—H190.9300
C3—C41.381 (2)C20—C211.384 (3)
C3—H30.9300C21—C221.380 (3)
C4—C51.387 (2)C21—H210.9300
C5—C61.385 (2)C22—H220.9300
C5—H50.9300C23—C241.496 (3)
C7—C81.497 (3)C23—H23A0.9700
C7—H7A0.9700C23—H23B0.9700
C7—H7B0.9700C24—C251.318 (3)
C8—C91.320 (3)C24—H240.9300
C8—H80.9300C25—C271.491 (3)
C9—C101.497 (3)C25—C261.504 (3)
C9—C111.501 (3)C26—H26A0.9600
C10—H10A0.9600C26—H26B0.9600
C10—H10B0.9600C26—H26C0.9600
C10—H10C0.9600C27—H27A0.9600
C11—H11A0.9600C27—H27B0.9600
C11—H11B0.9600C27—H27C0.9600
C4—O1—C7117.34 (14)O3—C13—C12124.87 (17)
C6—O2—C12117.60 (15)O4—C13—C12110.40 (16)
C13—O4—H4109.5O5—C14—C15119.55 (17)
C20—O6—C23117.28 (14)O5—C14—C1118.69 (17)
C2—C1—C6115.70 (17)C15—C14—C1121.75 (16)
C2—C1—C14115.69 (16)C16—C15—C14121.55 (17)
C6—C1—C14128.60 (17)C16—C15—H15119.2
C3—C2—C1124.82 (18)C14—C15—H15119.2
C3—C2—H2117.6C15—C16—C17126.66 (18)
C1—C2—H2117.6C15—C16—H16116.7
C2—C3—C4117.89 (18)C17—C16—H16116.7
C2—C3—H3121.1C18—C17—C22117.20 (18)
C4—C3—H3121.1C18—C17—C16121.73 (17)
O1—C4—C3125.01 (17)C22—C17—C16121.05 (17)
O1—C4—C5115.13 (16)C19—C18—C17122.12 (18)
C3—C4—C5119.87 (18)C19—C18—H18118.9
C6—C5—C4121.10 (17)C17—C18—H18118.9
C6—C5—H5119.4C18—C19—C20119.68 (18)
C4—C5—H5119.4C18—C19—H19120.2
O2—C6—C5121.04 (16)C20—C19—H19120.2
O2—C6—C1118.32 (17)O6—C20—C21116.85 (17)
C5—C6—C1120.63 (17)O6—C20—C19123.79 (17)
O1—C7—C8106.76 (15)C21—C20—C19119.37 (18)
O1—C7—H7A110.4C22—C21—C20120.17 (18)
C8—C7—H7A110.4C22—C21—H21119.9
O1—C7—H7B110.4C20—C21—H21119.9
C8—C7—H7B110.4C21—C22—C17121.45 (18)
H7A—C7—H7B108.6C21—C22—H22119.3
C9—C8—C7124.88 (19)C17—C22—H22119.3
C9—C8—H8117.6O6—C23—C24107.45 (15)
C7—C8—H8117.6O6—C23—H23A110.2
C8—C9—C10122.93 (19)C24—C23—H23A110.2
C8—C9—C11121.79 (19)O6—C23—H23B110.2
C10—C9—C11115.28 (18)C24—C23—H23B110.2
C9—C10—H10A109.5H23A—C23—H23B108.5
C9—C10—H10B109.5C25—C24—C23125.31 (18)
H10A—C10—H10B109.5C25—C24—H24117.3
C9—C10—H10C109.5C23—C24—H24117.3
H10A—C10—H10C109.5C24—C25—C27123.09 (19)
H10B—C10—H10C109.5C24—C25—C26122.65 (19)
C9—C11—H11A109.5C27—C25—C26114.26 (17)
C9—C11—H11B109.5C25—C26—H26A109.5
H11A—C11—H11B109.5C25—C26—H26B109.5
C9—C11—H11C109.5H26A—C26—H26B109.5
H11A—C11—H11C109.5C25—C26—H26C109.5
H11B—C11—H11C109.5H26A—C26—H26C109.5
O2—C12—C13108.73 (15)H26B—C26—H26C109.5
O2—C12—H12A109.9C25—C27—H27A109.5
C13—C12—H12A109.9C25—C27—H27B109.5
O2—C12—H12B109.9H27A—C27—H27B109.5
C13—C12—H12B109.9C25—C27—H27C109.5
H12A—C12—H12B108.3H27A—C27—H27C109.5
O3—C13—O4124.73 (17)H27B—C27—H27C109.5
C6—C1—C2—C3−0.1 (3)C6—C1—C14—O5−173.38 (18)
C14—C1—C2—C3−178.72 (18)C2—C1—C14—C15−173.64 (17)
C1—C2—C3—C40.0 (3)C6—C1—C14—C157.9 (3)
C7—O1—C4—C3−1.5 (3)O5—C14—C15—C164.4 (3)
C7—O1—C4—C5178.51 (17)C1—C14—C15—C16−176.88 (19)
C2—C3—C4—O1179.78 (18)C14—C15—C16—C17177.71 (18)
C2—C3—C4—C5−0.2 (3)C15—C16—C17—C18−0.9 (3)
O1—C4—C5—C6−179.55 (17)C15—C16—C17—C22−179.1 (2)
C3—C4—C5—C60.5 (3)C22—C17—C18—C191.0 (3)
C12—O2—C6—C59.4 (2)C16—C17—C18—C19−177.29 (18)
C12—O2—C6—C1−171.72 (16)C17—C18—C19—C20−0.4 (3)
C4—C5—C6—O2178.39 (17)C23—O6—C20—C21176.04 (16)
C4—C5—C6—C1−0.5 (3)C23—O6—C20—C19−3.7 (3)
C2—C1—C6—O2−178.62 (16)C18—C19—C20—O6179.39 (18)
C14—C1—C6—O2−0.2 (3)C18—C19—C20—C21−0.4 (3)
C2—C1—C6—C50.3 (3)O6—C20—C21—C22−179.27 (17)
C14—C1—C6—C5178.73 (19)C19—C20—C21—C220.5 (3)
C4—O1—C7—C8174.14 (16)C20—C21—C22—C170.1 (3)
O1—C7—C8—C9179.36 (18)C18—C17—C22—C21−0.8 (3)
C7—C8—C9—C10−0.1 (3)C16—C17—C22—C21177.45 (18)
C7—C8—C9—C11−179.8 (2)C20—O6—C23—C24178.69 (16)
C6—O2—C12—C13171.66 (15)O6—C23—C24—C25−170.7 (2)
O2—C12—C13—O34.4 (3)C23—C24—C25—C27−1.1 (3)
O2—C12—C13—O4−175.26 (14)C23—C24—C25—C26178.5 (2)
C2—C1—C14—O55.0 (3)
D—H···AD—HH···AD···AD—H···A
O4—H4···O3i0.821.832.6474 (19)176
C3—H3···O5ii0.932.563.456 (2)162
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4⋯O3i0.821.832.6474 (19)176
C3—H3⋯O5ii0.932.563.456 (2)162

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Sofalcone, an anti-ulcer chalcone derivative, suppresses inflammatory crosstalk between macrophages and adipocytes and adipocyte differentiation: implication of heme-oxygenase-1 induction.

Authors:  Hideaki Tanaka; Seito Nakamura; Kenji Onda; Tomoya Tazaki; Toshihiko Hirano
Journal:  Biochem Biophys Res Commun       Date:  2009-02-23       Impact factor: 3.575

3.  Anti-ulcer effect of isoprenyl flavonoids. II. Synthesis and anti-ulcer activity of new chalcones related to sophoradin.

Authors:  K Kyogoku; K Hatayama; S Yokomori; R Saziki; S Nakane; M Sasajima; J Sawada; M Ohzeki; I Tanaka
Journal:  Chem Pharm Bull (Tokyo)       Date:  1979-12       Impact factor: 1.645

  3 in total
  3 in total

1.  (2E)-1-(5-Bromo-thio-phen-2-yl)-3-(2,3,4-trimeth-oxy-phen-yl)prop-2-en-1-one.

Authors:  K Sunitha; H C Devarajegowda; Waleed Fadl Ali Al-Eryani; Y Rajendra Prasad; A Uma Mahesh Kumar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-10

2.  (2E)-3-(2-Bromo-phen-yl)-1-(5-bromo-thio-phen-2-yl)prop-2-en-1-one.

Authors:  Suresh B Vepuri; H C Devarajegowda; S Jeyaseelan; S Anbazhagan; Y Rajendra Prasad
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-28

3.  Crystal structure of (2E)-1-(5-bromo-thio-phen-2-yl)-3-(2-chloro-phen-yl)prop-2-en-1-one.

Authors:  B R Anitha; M Vinduvahini; A J Ravi; H C Devarajegowda
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-11-14
  3 in total

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