Literature DB >> 21754028

(E)-6-Bromo-3-{2-[2-(2-chloro-benzyl-idene)hydrazin-yl]thia-zol-5-yl}-2H-chromen-2-one dimethyl sulfoxide monosolvate.

Afsheen Arshad, Hasnah Osman, Chan Kit Lam, Madhukar Hemamalini, Hoong-Kun Fun.   

Abstract

In the title compound C(19)H(11)N(3)O(2)SClBr·C(2)H(6)OS, the mol-ecule adopts an E configuration about the central C=N double bond. The chromene ring system and the thia-zole ring are approximately planar, with maximum deviations of 0.027 (2) and 0.003 (1) Å, respectively. The central thia-zole ring makes dihedral angles of 21.82 (9) and 5.88 (7)° with the chloro-substituted phenyl ring and the chromene ring, respectively. In the crystal, mol-ecules are connected via N-H⋯O, N-H⋯S and C-H⋯O hydrogen bonds, forming supra-molecular chains along the c axis. An intra-molecular C-H⋯O hydrogen bond occurs. π-π inter-actions are observed between the thia-zole and phenyl rings [centroid-centroid distance = 3.6293 (10) Å]. A short Br⋯Cl contact of 3.37 (6) Å also occurs.

Entities:  

Year:  2011        PMID: 21754028      PMCID: PMC3100073          DOI: 10.1107/S1600536811011160

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details and applications of coumarin derivatives, see Liebig et al. (1974 ▶); Pathak et al. (1981 ▶); Hwu et al. (2008 ▶); Lee et al. (2003 ▶); Siddiqui et al. (2009 ▶). For the synthesis of the title compound, see: Tian et al. (1997 ▶); Yaragatti et al. (2010 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C19H11BrClN3O2S·C2H6OS M = 538.86 Monoclinic, a = 6.5806 (4) Å b = 15.7789 (9) Å c = 20.9378 (13) Å β = 90.684 (2)° V = 2173.9 (2) Å3 Z = 4 Mo Kα radiation μ = 2.24 mm−1 T = 100 K 0.49 × 0.09 × 0.06 mm

Data collection

Bruker APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.406, T max = 0.870 37791 measured reflections 6392 independent reflections 5013 reflections with I > 2σ(I) R int = 0.059

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.069 S = 1.00 6392 reflections 290 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.59 e Å−3 Δρmin = −0.86 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811011160/sj5124sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811011160/sj5124Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H11BrClN3O2S·C2H6OSF(000) = 1088
Mr = 538.86Dx = 1.646 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9665 reflections
a = 6.5806 (4) Åθ = 2.8–29.9°
b = 15.7789 (9) ŵ = 2.24 mm1
c = 20.9378 (13) ÅT = 100 K
β = 90.684 (2)°Needle, yellow
V = 2173.9 (2) Å30.49 × 0.09 × 0.06 mm
Z = 4
Bruker APEXII DUO CCD area-detector diffractometer6392 independent reflections
Radiation source: fine-focus sealed tube5013 reflections with I > 2σ(I)
graphiteRint = 0.059
φ and ω scansθmax = 30.1°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −9→9
Tmin = 0.406, Tmax = 0.870k = −22→22
37791 measured reflectionsl = −29→28
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.069H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0237P)2 + 1.8103P] where P = (Fo2 + 2Fc2)/3
6392 reflections(Δ/σ)max = 0.002
290 parametersΔρmax = 0.59 e Å3
0 restraintsΔρmin = −0.86 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br11.24046 (3)0.503519 (12)0.413433 (9)0.02077 (6)
S10.06464 (7)0.92776 (3)0.44296 (2)0.01447 (9)
Cl1−0.43250 (7)0.82410 (3)0.14834 (2)0.01568 (9)
S20.19587 (8)0.69303 (3)0.22076 (2)0.01861 (10)
O10.85351 (19)0.78959 (8)0.55746 (6)0.0141 (3)
O20.6219 (2)0.88767 (8)0.57238 (6)0.0178 (3)
O30.0131 (2)0.67996 (9)0.26280 (7)0.0221 (3)
N10.2804 (2)0.79823 (9)0.40883 (7)0.0124 (3)
N2−0.0151 (2)0.81708 (10)0.34770 (8)0.0151 (3)
N3−0.1775 (2)0.86848 (9)0.33469 (7)0.0140 (3)
C10.6516 (3)0.73061 (11)0.44975 (8)0.0134 (3)
H1A0.58250.70930.41420.016*
C20.8397 (3)0.69208 (11)0.46917 (8)0.0131 (3)
C30.9315 (3)0.62551 (11)0.43607 (9)0.0151 (4)
H3A0.86930.60270.39980.018*
C41.1151 (3)0.59407 (11)0.45784 (9)0.0154 (4)
C51.2114 (3)0.62663 (12)0.51219 (9)0.0160 (4)
H5A1.33530.60450.52600.019*
C61.1216 (3)0.69197 (11)0.54534 (9)0.0155 (4)
H6A1.18360.71410.58180.019*
C70.9373 (3)0.72427 (11)0.52342 (8)0.0130 (3)
C80.6760 (3)0.82992 (11)0.53893 (8)0.0126 (3)
C90.5713 (3)0.79729 (11)0.48163 (8)0.0127 (3)
C100.3801 (3)0.83652 (11)0.46033 (8)0.0123 (3)
C110.2874 (3)0.90653 (11)0.48441 (9)0.0146 (3)
C120.1142 (3)0.83956 (11)0.39565 (8)0.0129 (3)
C13−0.2802 (3)0.84836 (11)0.28434 (8)0.0135 (3)
H13A−0.23950.80280.25940.016*
C14−0.4611 (3)0.89708 (10)0.26614 (8)0.0119 (3)
C15−0.5571 (3)0.95147 (11)0.30911 (8)0.0140 (3)
H15A−0.50630.95610.35060.017*
C16−0.7256 (3)0.99838 (11)0.29128 (9)0.0165 (4)
H16A−0.78521.03510.32040.020*
C17−0.8065 (3)0.99079 (11)0.22969 (9)0.0174 (4)
H17A−0.92031.02220.21770.021*
C18−0.7171 (3)0.93639 (11)0.18634 (9)0.0159 (4)
H18A−0.77130.93050.14540.019*
C19−0.5458 (3)0.89069 (10)0.20465 (8)0.0124 (3)
C200.1935 (3)0.60863 (12)0.16416 (9)0.0197 (4)
H20A0.07940.61530.13560.030*
H20B0.18280.55550.18620.030*
H20C0.31700.60970.14020.030*
C210.4090 (3)0.66012 (13)0.26810 (10)0.0248 (4)
H21A0.42600.69800.30360.037*
H21B0.52910.66100.24260.037*
H21C0.38640.60370.28360.037*
H110.337 (4)0.9398 (15)0.5171 (11)0.028 (6)*
H1N10.009 (4)0.7740 (15)0.3243 (11)0.025 (6)*
U11U22U33U12U13U23
Br10.01991 (10)0.02102 (9)0.02135 (10)0.00864 (8)−0.00087 (7)−0.00287 (8)
S10.0134 (2)0.01564 (19)0.0143 (2)0.00403 (17)−0.00280 (17)−0.00214 (16)
Cl10.0156 (2)0.01753 (19)0.01388 (19)0.00135 (17)−0.00127 (16)−0.00306 (15)
S20.0189 (2)0.01360 (19)0.0234 (2)−0.00134 (18)0.00188 (19)0.00019 (17)
O10.0126 (6)0.0165 (6)0.0132 (6)0.0020 (5)−0.0029 (5)−0.0014 (5)
O20.0173 (7)0.0198 (6)0.0162 (6)0.0021 (5)−0.0036 (5)−0.0055 (5)
O30.0189 (7)0.0204 (7)0.0271 (8)−0.0024 (6)0.0065 (6)−0.0067 (6)
N10.0112 (7)0.0138 (7)0.0121 (7)0.0003 (6)−0.0023 (6)−0.0013 (5)
N20.0135 (7)0.0161 (7)0.0157 (7)0.0036 (6)−0.0049 (6)−0.0032 (6)
N30.0109 (7)0.0161 (7)0.0149 (7)0.0021 (6)−0.0014 (6)0.0019 (6)
C10.0133 (8)0.0157 (8)0.0111 (8)−0.0001 (7)−0.0035 (7)−0.0002 (6)
C20.0110 (8)0.0149 (8)0.0134 (8)−0.0003 (7)−0.0014 (7)0.0007 (6)
C30.0139 (9)0.0170 (8)0.0145 (8)0.0017 (7)−0.0028 (7)−0.0008 (7)
C40.0153 (9)0.0145 (8)0.0164 (9)0.0031 (7)0.0011 (7)−0.0002 (7)
C50.0125 (8)0.0189 (8)0.0166 (9)0.0025 (7)−0.0028 (7)0.0038 (7)
C60.0146 (9)0.0183 (8)0.0136 (8)−0.0008 (7)−0.0031 (7)0.0017 (7)
C70.0126 (8)0.0135 (8)0.0128 (8)0.0000 (7)−0.0004 (7)−0.0004 (6)
C80.0104 (8)0.0151 (8)0.0123 (8)−0.0010 (7)−0.0004 (6)0.0014 (6)
C90.0110 (8)0.0150 (8)0.0120 (8)−0.0016 (7)−0.0019 (7)0.0016 (6)
C100.0103 (8)0.0147 (8)0.0117 (8)0.0000 (7)−0.0017 (6)0.0010 (6)
C110.0128 (8)0.0162 (8)0.0147 (8)0.0009 (7)−0.0038 (7)−0.0002 (7)
C120.0136 (8)0.0125 (7)0.0125 (8)−0.0001 (7)0.0002 (7)0.0005 (6)
C130.0123 (8)0.0135 (8)0.0146 (8)0.0010 (7)−0.0017 (7)−0.0004 (6)
C140.0103 (8)0.0125 (7)0.0129 (8)−0.0014 (6)−0.0013 (6)0.0010 (6)
C150.0123 (8)0.0168 (8)0.0128 (8)−0.0018 (7)−0.0015 (7)0.0013 (7)
C160.0159 (9)0.0165 (8)0.0172 (8)0.0010 (7)−0.0001 (7)−0.0018 (7)
C170.0151 (9)0.0181 (8)0.0189 (9)0.0032 (7)−0.0022 (7)0.0015 (7)
C180.0154 (9)0.0178 (8)0.0144 (8)0.0004 (7)−0.0043 (7)0.0006 (7)
C190.0123 (8)0.0115 (7)0.0134 (8)−0.0011 (6)−0.0002 (7)−0.0009 (6)
C200.0185 (9)0.0228 (9)0.0179 (9)0.0006 (8)0.0018 (8)−0.0019 (7)
C210.0217 (10)0.0269 (10)0.0257 (10)−0.0002 (9)−0.0036 (8)−0.0055 (8)
Br1—C41.8986 (18)C5—H5A0.9300
S1—C111.7273 (18)C6—C71.389 (2)
S1—C121.7413 (18)C6—H6A0.9300
Cl1—C191.7524 (18)C8—C91.469 (2)
S2—O31.5130 (15)C9—C101.467 (2)
S2—C201.7826 (19)C10—C111.362 (2)
S2—C211.785 (2)C11—H110.92 (2)
O1—C71.372 (2)C13—C141.464 (2)
O1—C81.382 (2)C13—H13A0.9300
O2—C81.206 (2)C14—C151.399 (2)
N1—C121.300 (2)C14—C191.400 (2)
N1—C101.393 (2)C15—C161.381 (2)
N2—C121.356 (2)C15—H15A0.9300
N2—N31.366 (2)C16—C171.394 (3)
N2—H1N10.85 (2)C16—H16A0.9300
N3—C131.286 (2)C17—C181.385 (3)
C1—C91.356 (2)C17—H17A0.9300
C1—C21.434 (2)C18—C191.388 (2)
C1—H1A0.9300C18—H18A0.9300
C2—C71.394 (2)C20—H20A0.9600
C2—C31.399 (2)C20—H20B0.9600
C3—C41.379 (2)C20—H20C0.9600
C3—H3A0.9300C21—H21A0.9600
C4—C51.394 (2)C21—H21B0.9600
C5—C61.380 (3)C21—H21C0.9600
C11—S1—C1288.12 (9)C10—C11—S1110.64 (13)
O3—S2—C20106.51 (9)C10—C11—H11125.6 (15)
O3—S2—C21105.18 (10)S1—C11—H11123.7 (15)
C20—S2—C2198.77 (9)N1—C12—N2123.02 (16)
C7—O1—C8122.92 (13)N1—C12—S1116.29 (13)
C12—N1—C10109.50 (15)N2—C12—S1120.68 (13)
C12—N2—N3118.35 (15)N3—C13—C14120.14 (16)
C12—N2—H1N1120.9 (16)N3—C13—H13A119.9
N3—N2—H1N1120.6 (16)C14—C13—H13A119.9
C13—N3—N2114.80 (15)C15—C14—C19117.24 (16)
C9—C1—C2121.96 (16)C15—C14—C13121.77 (15)
C9—C1—H1A119.0C19—C14—C13120.99 (16)
C2—C1—H1A119.0C16—C15—C14121.46 (16)
C7—C2—C3118.67 (16)C16—C15—H15A119.3
C7—C2—C1117.67 (16)C14—C15—H15A119.3
C3—C2—C1123.65 (16)C15—C16—C17120.03 (17)
C4—C3—C2119.21 (16)C15—C16—H16A120.0
C4—C3—H3A120.4C17—C16—H16A120.0
C2—C3—H3A120.4C18—C17—C16119.91 (17)
C3—C4—C5121.69 (17)C18—C17—H17A120.0
C3—C4—Br1119.54 (14)C16—C17—H17A120.0
C5—C4—Br1118.76 (14)C17—C18—C19119.39 (16)
C6—C5—C4119.52 (17)C17—C18—H18A120.3
C6—C5—H5A120.2C19—C18—H18A120.3
C4—C5—H5A120.2C18—C19—C14121.95 (16)
C5—C6—C7119.07 (16)C18—C19—Cl1118.43 (13)
C5—C6—H6A120.5C14—C19—Cl1119.61 (13)
C7—C6—H6A120.5S2—C20—H20A109.5
O1—C7—C6117.31 (15)S2—C20—H20B109.5
O1—C7—C2120.85 (15)H20A—C20—H20B109.5
C6—C7—C2121.84 (17)S2—C20—H20C109.5
O2—C8—O1116.07 (15)H20A—C20—H20C109.5
O2—C8—C9126.89 (16)H20B—C20—H20C109.5
O1—C8—C9117.03 (15)S2—C21—H21A109.5
C1—C9—C10121.02 (15)S2—C21—H21B109.5
C1—C9—C8119.48 (16)H21A—C21—H21B109.5
C10—C9—C8119.50 (16)S2—C21—H21C109.5
C11—C10—N1115.44 (15)H21A—C21—H21C109.5
C11—C10—C9128.05 (16)H21B—C21—H21C109.5
N1—C10—C9116.52 (15)
C12—N2—N3—C13172.62 (17)C1—C9—C10—C11−175.39 (19)
C9—C1—C2—C71.4 (3)C8—C9—C10—C115.5 (3)
C9—C1—C2—C3−177.32 (18)C1—C9—C10—N14.1 (3)
C7—C2—C3—C4−0.2 (3)C8—C9—C10—N1−174.95 (16)
C1—C2—C3—C4178.50 (17)N1—C10—C11—S10.4 (2)
C2—C3—C4—C50.3 (3)C9—C10—C11—S1179.94 (15)
C2—C3—C4—Br1179.80 (14)C12—S1—C11—C10−0.06 (15)
C3—C4—C5—C60.0 (3)C10—N1—C12—N2−179.95 (17)
Br1—C4—C5—C6−179.46 (14)C10—N1—C12—S10.6 (2)
C4—C5—C6—C7−0.4 (3)N3—N2—C12—N1−175.07 (16)
C8—O1—C7—C6176.78 (16)N3—N2—C12—S14.4 (2)
C8—O1—C7—C2−3.3 (3)C11—S1—C12—N1−0.32 (15)
C5—C6—C7—O1−179.58 (16)C11—S1—C12—N2−179.80 (16)
C5—C6—C7—C20.5 (3)N2—N3—C13—C14178.34 (15)
C3—C2—C7—O1179.92 (16)N3—C13—C14—C15−16.2 (3)
C1—C2—C7—O11.1 (3)N3—C13—C14—C19164.06 (17)
C3—C2—C7—C6−0.2 (3)C19—C14—C15—C16−1.4 (3)
C1—C2—C7—C6−178.99 (17)C13—C14—C15—C16178.83 (17)
C7—O1—C8—O2−178.27 (16)C14—C15—C16—C171.4 (3)
C7—O1—C8—C92.8 (2)C15—C16—C17—C18−0.3 (3)
C2—C1—C9—C10179.09 (16)C16—C17—C18—C19−0.8 (3)
C2—C1—C9—C8−1.8 (3)C17—C18—C19—C140.8 (3)
O2—C8—C9—C1−179.01 (18)C17—C18—C19—Cl1−178.63 (14)
O1—C8—C9—C1−0.3 (2)C15—C14—C19—C180.3 (3)
O2—C8—C9—C100.1 (3)C13—C14—C19—C18−179.91 (17)
O1—C8—C9—C10178.85 (15)C15—C14—C19—Cl1179.71 (13)
C12—N1—C10—C11−0.6 (2)C13—C14—C19—Cl1−0.5 (2)
C12—N1—C10—C9179.78 (16)
D—H···AD—HH···AD···AD—H···A
N2—H1N1···S20.85 (2)2.81 (2)3.5932 (17)153 (2)
N2—H1N1···O30.85 (2)1.97 (2)2.808 (2)169 (3)
C11—H11···O20.92 (2)2.34 (3)2.869 (2)116.3 (19)
C13—H13A···O30.932.553.318 (2)140
C17—H17A···O3i0.932.603.285 (2)131
C20—H20C···O2ii0.962.473.431 (2)176
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1N1⋯S20.85 (2)2.81 (2)3.5932 (17)153 (2)
N2—H1N1⋯O30.85 (2)1.97 (2)2.808 (2)169 (3)
C11—H11⋯O20.92 (2)2.34 (3)2.869 (2)116.3 (19)
C13—H13A⋯O30.932.553.318 (2)140
C17—H17A⋯O3i0.932.603.285 (2)131
C20—H20C⋯O2ii0.962.473.431 (2)176

Symmetry codes: (i) ; (ii) .

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Journal:  Acta Pol Pharm       Date:  2009 Mar-Apr       Impact factor: 0.330

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Authors:  Jih Ru Hwu; Raghunath Singha; Shih Ching Hong; Yung Hsiung Chang; Asish R Das; Inge Vliegen; Erik De Clercq; Johan Neyts
Journal:  Antiviral Res       Date:  2007-10-08       Impact factor: 5.970

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total
  1 in total

1.  Microwave-assisted synthesis and antioxidant properties of hydrazinyl thiazolyl coumarin derivatives.

Authors:  Hasnah Osman; Afsheen Arshad; Chan Kit Lam; Mark C Bagley
Journal:  Chem Cent J       Date:  2012-04-17       Impact factor: 4.215

  1 in total

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