Literature DB >> 21754012

cis-Bis[4-amino-N-(pyrimidin-2-yl)benzene-sulfonamido-κN,N']bis-(dimethyl sulfoxide-κO)cadmium.

G M Golzar Hossain1.   

Abstract

The complete mol-ecule of the title compound, [Cd(C(10)H(9)N(4)O(2)S)(2)(C(2)H(6)OS)(2)], is completed by the application of a twofold rotation axis. The Cd(II) atom is six coordinated by two bidentate sulfadiazinate anions and two dimethyl-sulfoxide mol-ecules. The resulting N(4)O(2) donor set displays a distorted trigonal-prismatic coordination geometry. The S atom and methyl groups of dimethyl-sulfoxide are disordered over two sets of sites, with site occupancies of 0.715 (4) and 0.285 (4). The crystal structure features inter-molecular N-H⋯N and N-H⋯O hydrogen bonds that lead to the formation of layers in the ab plane.

Entities:  

Year:  2011        PMID: 21754012      PMCID: PMC3099781          DOI: 10.1107/S1600536811010816

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Heren et al. (2006 ▶); Hossain & Amoroso (2007 ▶). For background to hydrogen bonds formed by sulfadiazinate anions, see: Paşaoğlu et al. (2008 ▶).

Experimental

Crystal data

[Cd(C10H9N4O2S)2(C2H6OS)2] M = 767.20 Orthorhombic, a = 16.9168 (5) Å b = 15.2448 (3) Å c = 11.8402 (3) Å V = 3053.51 (13) Å3 Z = 4 Mo Kα radiation μ = 1.04 mm−1 T = 150 K 0.22 × 0.20 × 0.18 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (Blessing, 1995 ▶) T min = 0.803, T max = 0.835 21431 measured reflections 3503 independent reflections 2545 reflections with I > 2σ(I) R int = 0.088

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.102 S = 1.09 3503 reflections 235 parameters 30 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.74 e Å−3 Δρmin = −0.78 e Å−3 Data collection: DENZO (Otwinowski & Minor, 1997 ▶) and COLLECT (Hooft, 1998 ▶); cell refinement: DENZO and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811010816/tk2721sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811010816/tk2721Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cd(C10H9N4O2S)2(C2H6OS)2]F(000) = 1560
Mr = 767.20Dx = 1.669 Mg m3
Orthorhombic, PbcnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2n 2abCell parameters from 3503 reflections
a = 16.9168 (5) Åθ = 2.9–27.5°
b = 15.2448 (3) ŵ = 1.04 mm1
c = 11.8402 (3) ÅT = 150 K
V = 3053.51 (13) Å3Block, white
Z = 40.22 × 0.20 × 0.18 mm
Nonius KappaCCD diffractometer3503 independent reflections
Radiation source: fine-focus sealed tube2545 reflections with I > 2σ(I)
graphiteRint = 0.088
ω scansθmax = 27.5°, θmin = 3.2°
Absorption correction: multi-scan (Blessing, 1995)h = −21→18
Tmin = 0.803, Tmax = 0.835k = −19→19
21431 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.102H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0172P)2 + 6.2081P] where P = (Fo2 + 2Fc2)/3
3503 reflections(Δ/σ)max = 0.001
235 parametersΔρmax = 0.74 e Å3
30 restraintsΔρmin = −0.78 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cd10.00000.12725 (2)0.25000.02037 (13)
S11−0.15957 (6)0.26178 (6)0.36236 (8)0.0199 (2)
O11−0.20168 (16)0.21509 (17)0.2743 (2)0.0270 (7)
O12−0.19685 (16)0.26244 (17)0.4719 (2)0.0257 (6)
N11−0.07346 (19)0.21814 (19)0.3648 (3)0.0198 (7)
N120.05166 (19)0.1969 (2)0.4215 (3)0.0199 (7)
N13−0.0247 (2)0.3085 (2)0.5150 (3)0.0249 (8)
N14−0.1601 (2)0.6222 (2)0.1768 (3)0.0303 (8)
H14A−0.129 (2)0.630 (3)0.111 (3)0.049 (15)*
H14B−0.204 (2)0.655 (3)0.204 (4)0.050 (15)*
C11−0.0156 (2)0.2441 (2)0.4378 (3)0.0192 (8)
C120.1152 (2)0.2199 (3)0.4811 (3)0.0262 (9)
H120.16370.19010.46850.031*
C130.1122 (3)0.2854 (3)0.5601 (4)0.0328 (11)
H130.15750.30160.60260.039*
C140.0402 (3)0.3271 (3)0.5751 (4)0.0329 (11)
H140.03670.37140.63130.039*
C15−0.1503 (2)0.3716 (2)0.3178 (3)0.0206 (8)
C16−0.1968 (3)0.4361 (3)0.3654 (3)0.0280 (10)
H16−0.22690.42320.43120.034*
C17−0.2005 (3)0.5188 (3)0.3195 (4)0.0288 (10)
H17−0.23360.56190.35300.035*
C18−0.1556 (2)0.5402 (2)0.2229 (3)0.0231 (9)
C19−0.1065 (3)0.4757 (3)0.1783 (4)0.0312 (10)
H19−0.07390.48890.11520.037*
C20−0.1045 (3)0.3927 (3)0.2248 (4)0.0332 (11)
H20−0.07110.34930.19240.040*
O1−0.08770 (19)0.01537 (18)0.2349 (2)0.0364 (8)
S1−0.08063 (10)−0.05478 (10)0.14466 (12)0.0277 (5)0.715 (4)
S1'−0.1400 (3)−0.0149 (3)0.1457 (3)0.0378 (15)0.285 (4)
C1−0.1509 (6)−0.0296 (6)0.0397 (7)0.068 (2)0.715 (4)
H1A−0.2036−0.02650.07390.101*0.715 (4)
H1B−0.1504−0.0753−0.01850.101*0.715 (4)
H1C−0.13790.02710.00530.101*0.715 (4)
C2−0.1237 (6)−0.1479 (5)0.2028 (7)0.051 (2)0.715 (4)
H2A−0.0896−0.17100.26280.076*0.715 (4)
H2B−0.1304−0.19250.14400.076*0.715 (4)
H2C−0.1754−0.13270.23460.076*0.715 (4)
C1'−0.0900 (11)−0.0263 (12)0.0231 (14)0.042 (4)0.285 (4)
H1'1−0.08430.0311−0.01320.064*0.285 (4)
H1'2−0.1192−0.0659−0.02710.064*0.285 (4)
H1'3−0.0375−0.05080.03840.064*0.285 (4)
C2'−0.1696 (10)−0.1245 (11)0.1724 (15)0.040 (4)0.285 (4)
H2'1−0.1269−0.16460.15120.060*0.285 (4)
H2'2−0.2169−0.13800.12780.060*0.285 (4)
H2'3−0.1816−0.13150.25290.060*0.285 (4)
U11U22U33U12U13U23
Cd10.0263 (2)0.0129 (2)0.0219 (2)0.000−0.00159 (18)0.000
S110.0156 (5)0.0151 (5)0.0291 (5)−0.0010 (4)−0.0004 (4)0.0004 (4)
O110.0217 (15)0.0207 (15)0.0386 (17)−0.0055 (12)−0.0096 (13)−0.0029 (12)
O120.0208 (15)0.0236 (15)0.0328 (15)0.0002 (12)0.0050 (12)0.0048 (12)
N110.0178 (17)0.0148 (16)0.0269 (17)0.0027 (13)−0.0023 (15)−0.0019 (13)
N120.0162 (17)0.0201 (17)0.0234 (16)0.0028 (14)0.0008 (14)0.0010 (13)
N130.0215 (19)0.0261 (18)0.0270 (18)−0.0002 (15)0.0013 (15)−0.0092 (14)
N140.039 (2)0.0210 (18)0.0309 (19)0.0042 (18)0.0156 (18)0.0058 (15)
C110.017 (2)0.0179 (19)0.0223 (19)−0.0025 (16)0.0031 (16)0.0003 (15)
C120.018 (2)0.033 (2)0.028 (2)0.0020 (18)−0.0021 (18)0.0006 (18)
C130.023 (2)0.042 (3)0.033 (2)−0.004 (2)−0.0073 (19)−0.010 (2)
C140.028 (3)0.038 (3)0.033 (2)−0.002 (2)−0.005 (2)−0.017 (2)
C150.018 (2)0.0148 (19)0.029 (2)0.0010 (17)−0.0021 (17)0.0018 (15)
C160.032 (3)0.022 (2)0.030 (2)0.0020 (19)0.0095 (19)0.0010 (17)
C170.030 (2)0.019 (2)0.038 (2)0.0068 (19)0.012 (2)−0.0014 (17)
C180.024 (2)0.0173 (19)0.028 (2)−0.0019 (17)−0.0015 (18)−0.0007 (15)
C190.036 (3)0.020 (2)0.038 (2)−0.0013 (19)0.020 (2)0.0011 (18)
C200.037 (3)0.016 (2)0.047 (3)0.0023 (19)0.019 (2)−0.0017 (18)
O10.048 (2)0.0229 (15)0.0381 (17)−0.0132 (15)−0.0010 (15)−0.0059 (13)
S10.0303 (11)0.0219 (8)0.0310 (8)−0.0015 (7)−0.0025 (7)−0.0043 (6)
S1'0.040 (3)0.038 (3)0.036 (2)−0.001 (2)0.0012 (19)−0.0055 (18)
C10.074 (4)0.066 (4)0.063 (4)0.014 (4)−0.024 (4)−0.011 (3)
C20.071 (4)0.031 (3)0.050 (4)−0.012 (3)0.008 (3)−0.003 (3)
C1'0.051 (6)0.039 (6)0.037 (6)−0.004 (5)0.005 (5)−0.002 (4)
C2'0.041 (6)0.036 (6)0.043 (6)−0.008 (5)0.005 (5)−0.006 (4)
Cd1—O12.268 (3)C16—H160.9500
Cd1—O1i2.268 (3)C17—C181.412 (6)
Cd1—N11i2.305 (3)C17—H170.9500
Cd1—N112.305 (3)C18—C191.391 (6)
Cd1—N122.452 (3)C19—C201.380 (6)
Cd1—N12i2.452 (3)C19—H190.9500
S11—O121.442 (3)C20—H200.9500
S11—O111.449 (3)O1—S1'1.452 (5)
S11—N111.602 (3)O1—S11.516 (3)
S11—C151.762 (4)S1—C21.738 (7)
N11—C111.364 (5)S1—C11.763 (8)
N12—C121.333 (5)S1'—C1'1.689 (16)
N12—C111.361 (5)S1'—C2'1.774 (18)
N13—C141.339 (5)C1—H1A0.9800
N13—C111.351 (5)C1—H1B0.9800
N14—C181.366 (5)C1—H1C0.9800
N14—H14A0.94 (3)C2—H2A0.9800
N14—H14B0.95 (3)C2—H2B0.9800
C12—C131.369 (6)C2—H2C0.9800
C12—H120.9500C1'—H1'10.9800
C13—C141.385 (6)C1'—H1'20.9800
C13—H130.9500C1'—H1'30.9800
C14—H140.9500C2'—H2'10.9800
C15—C161.381 (5)C2'—H2'20.9800
C15—C201.385 (6)C2'—H2'30.9800
C16—C171.373 (6)
O1—Cd1—O1i82.45 (16)N13—C14—H14118.1
O1—Cd1—N11i139.32 (10)C13—C14—H14118.1
O1i—Cd1—N11i98.40 (11)C16—C15—C20118.6 (4)
O1—Cd1—N1198.40 (11)C16—C15—S11120.3 (3)
O1i—Cd1—N11139.32 (10)C20—C15—S11120.6 (3)
N11i—Cd1—N11106.09 (15)C17—C16—C15121.2 (4)
O1—Cd1—N12128.62 (10)C17—C16—H16119.4
O1i—Cd1—N1291.54 (11)C15—C16—H16119.4
N11i—Cd1—N1292.06 (11)C16—C17—C18120.5 (4)
N11—Cd1—N1256.20 (11)C16—C17—H17119.7
O1—Cd1—N12i91.54 (11)C18—C17—H17119.7
O1i—Cd1—N12i128.62 (10)N14—C18—C19121.9 (4)
N11i—Cd1—N12i56.20 (11)N14—C18—C17120.3 (4)
N11—Cd1—N12i92.06 (11)C19—C18—C17117.8 (4)
N12—Cd1—N12i128.72 (14)C20—C19—C18120.7 (4)
O12—S11—O11115.81 (17)C20—C19—H19119.6
O12—S11—N11112.60 (17)C18—C19—H19119.6
O11—S11—N11104.83 (17)C19—C20—C15121.1 (4)
O12—S11—C15107.54 (17)C19—C20—H20119.4
O11—S11—C15107.16 (17)C15—C20—H20119.4
N11—S11—C15108.61 (17)S1'—O1—S146.5 (2)
C11—N11—S11122.9 (3)S1'—O1—Cd1134.0 (2)
C11—N11—Cd199.3 (2)S1—O1—Cd1122.32 (18)
S11—N11—Cd1136.84 (18)O1—S1—C2105.3 (3)
C12—N12—C11117.4 (3)O1—S1—C1106.8 (3)
C12—N12—Cd1147.1 (3)C2—S1—C1100.1 (5)
C11—N12—Cd192.8 (2)O1—S1'—C1'110.7 (7)
C14—N13—C11114.8 (3)O1—S1'—C2'110.0 (6)
C18—N14—H14A114 (3)C1'—S1'—C2'101.4 (9)
C18—N14—H14B114 (3)S1'—C1'—H1'1109.5
H14A—N14—H14B130 (4)S1'—C1'—H1'2109.5
N13—C11—N12125.1 (3)H1'1—C1'—H1'2109.5
N13—C11—N11123.9 (3)S1'—C1'—H1'3109.5
N12—C11—N11110.9 (3)H1'1—C1'—H1'3109.5
N12—C12—C13121.6 (4)H1'2—C1'—H1'3109.5
N12—C12—H12119.2S1'—C2'—H2'1109.5
C13—C12—H12119.2S1'—C2'—H2'2109.5
C12—C13—C14117.1 (4)H2'1—C2'—H2'2109.5
C12—C13—H13121.5S1'—C2'—H2'3109.5
C14—C13—H13121.5H2'1—C2'—H2'3109.5
N13—C14—C13123.8 (4)H2'2—C2'—H2'3109.5
O12—S11—N11—C11−52.9 (3)N12—C12—C13—C14−0.2 (7)
O11—S11—N11—C11−179.7 (3)C11—N13—C14—C130.9 (6)
C15—S11—N11—C1166.1 (3)C12—C13—C14—N13−2.1 (7)
O12—S11—N11—Cd1140.9 (2)O12—S11—C15—C16−20.1 (4)
O11—S11—N11—Cd114.2 (3)O11—S11—C15—C16105.1 (3)
C15—S11—N11—Cd1−100.1 (3)N11—S11—C15—C16−142.2 (3)
O1—Cd1—N11—C11137.0 (2)O12—S11—C15—C20168.7 (3)
O1i—Cd1—N11—C1148.8 (3)O11—S11—C15—C20−66.1 (4)
N11i—Cd1—N11—C11−75.9 (2)N11—S11—C15—C2046.6 (4)
N12—Cd1—N11—C115.6 (2)C20—C15—C16—C172.6 (6)
N12i—Cd1—N11—C11−131.2 (2)S11—C15—C16—C17−168.8 (3)
O1—Cd1—N11—S11−54.8 (3)C15—C16—C17—C18−1.0 (7)
O1i—Cd1—N11—S11−142.9 (2)C16—C17—C18—N14179.3 (4)
N11i—Cd1—N11—S1192.4 (3)C16—C17—C18—C19−1.6 (6)
N12—Cd1—N11—S11173.9 (3)N14—C18—C19—C20−178.4 (4)
N12i—Cd1—N11—S1137.1 (3)C17—C18—C19—C202.5 (6)
O1—Cd1—N12—C12125.0 (5)C18—C19—C20—C15−0.9 (7)
O1i—Cd1—N12—C1243.4 (5)C16—C15—C20—C19−1.7 (7)
N11i—Cd1—N12—C12−55.0 (5)S11—C15—C20—C19169.7 (4)
N11—Cd1—N12—C12−163.1 (5)O1i—Cd1—O1—S1'−115.6 (4)
N12i—Cd1—N12—C12−101.8 (5)N11i—Cd1—O1—S1'−21.5 (4)
O1—Cd1—N12—C11−77.5 (2)N11—Cd1—O1—S1'105.5 (4)
O1i—Cd1—N12—C11−159.1 (2)N12—Cd1—O1—S1'158.5 (3)
N11i—Cd1—N12—C11102.5 (2)N12i—Cd1—O1—S1'13.1 (4)
N11—Cd1—N12—C11−5.6 (2)O1i—Cd1—O1—S1−57.01 (18)
N12i—Cd1—N12—C1155.66 (19)N11i—Cd1—O1—S137.1 (3)
C14—N13—C11—N122.6 (6)N11—Cd1—O1—S1164.1 (2)
C14—N13—C11—N11−176.9 (4)N12—Cd1—O1—S1−142.92 (18)
C12—N12—C11—N13−4.7 (6)N12i—Cd1—O1—S171.8 (2)
Cd1—N12—C11—N13−171.2 (3)S1'—O1—S1—C2−86.3 (4)
C12—N12—C11—N11174.9 (3)Cd1—O1—S1—C2151.5 (4)
Cd1—N12—C11—N118.4 (3)S1'—O1—S1—C119.5 (4)
S11—N11—C11—N130.0 (5)Cd1—O1—S1—C1−102.7 (4)
Cd1—N11—C11—N13170.5 (3)S1—O1—S1'—C1'−45.6 (7)
S11—N11—C11—N12−179.5 (3)Cd1—O1—S1'—C1'50.6 (8)
Cd1—N11—C11—N12−9.1 (3)S1—O1—S1'—C2'65.6 (7)
C11—N12—C12—C133.3 (6)Cd1—O1—S1'—C2'161.8 (6)
Cd1—N12—C12—C13157.7 (4)
D—H···AD—HH···AD···AD—H···A
N14—H14A···N13ii0.94 (3)2.30 (3)3.168 (5)152 (4)
N14—H14B···O11iii0.95 (3)2.02 (3)2.967 (5)173 (4)
Table 1

Selected bond lengths (Å)

Cd1—O12.268 (3)
Cd1—N112.305 (3)
Cd1—N122.452 (3)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N14—H14A⋯N13i0.94 (3)2.30 (3)3.168 (5)152 (4)
N14—H14B⋯O11ii0.95 (3)2.02 (3)2.967 (5)173 (4)

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

3.  cis-Bis(butyl-amine-κN)bis-[sulfa-diazine(1-)-κN,N']copper(II) penta-hydrate.

Authors:  Hümeyra Paşaoğlu; Gökhan Kaştaş; Zerrin Heren; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-23
  3 in total
  2 in total

1.  Bis[4-amino-N-(pyrimidin-2-yl)benzene-sulfonamidato]-κN,N';κN-aqua-bis-(dimethyl-formamide-κO)cadmium(II) monohydrate.

Authors:  G M Golzar Hossain
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-28

2.  Bis[4-amino-N-(pyrimidin-2-yl-κN)benzene-sulfonamidato-κN](4,4'-di-methyl-2,2'-bipyridine-κN,N')cadmium dimethyl-formamide disolvate.

Authors:  G M Golzar Hossain; A J Amoroso
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-10
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