Literature DB >> 21201631

cis-Bis(butyl-amine-κN)bis-[sulfa-diazine(1-)-κN,N']copper(II) penta-hydrate.

Hümeyra Paşaoğlu, Gökhan Kaştaş, Zerrin Heren, Orhan Büyükgüngör.   

Abstract

In the title compound {systematic name: cis-bis-[4-amino-N-(pyrimidin-2-yl)benzene-sulfonamidato-κ(2)N,N']bis-(butyl-amine-κN)copper(II) penta-hydrate}, [Cu(C(10)H(9)N(4)O(2)S)(2)(C(4)H(11)N)(2)]·5H(2)O or [Cu(sdz)(2)(ba)(2)]·5H(2)O [ba is butyl-amine and sdz = sulfadiazine(1-)], the copper(II) cation is six-coordinated by four N atoms of two sulfadiazine ligands and two N atoms of butyl-amine ligands. The copper(II) ion and one of the water mol-ecules lie on twofold rotation axes. One of the butyl groups is disordered over two sites, with occupancies of 0.395 (8) and 0.605 (8). The geometry around the S atom is distorted tetra-hedral. The crystal structure involves inter-molecular N-H⋯N and N-H⋯O hydrogen bonds. N-H⋯N hydrogen bonds between sdz ligands lead to a sheet structure parallel to the ab plane.

Entities:  

Year:  2008        PMID: 21201631      PMCID: PMC2960652          DOI: 10.1107/S1600536808026457

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Heren et al. (2006 ▶); Chung et al. (1975 ▶).

Experimental

Crystal data

[Cu(C10H9N4O2S)2(C4H11N)2]·5H2O M = 790.04 Orthorhombic, a = 22.623 (6) Å b = 10.342 (5) Å c = 16.250 (6) Å V = 3802 (2) Å3 Z = 4 Mo Kα radiation μ = 0.74 mm−1 T = 296 K 0.34 × 0.21 × 0.19 mm

Data collection

Stoe IPDS2 diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2002 ▶) T min = 0.821, T max = 0.899 57960 measured reflections 4235 independent reflections 2098 reflections with I > 2σ(I) R int = 0.085

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.141 S = 0.90 4235 reflections 234 parameters H-atom parameters constrained Δρmax = 0.65 e Å−3 Δρmin = −0.45 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808026457/cf2216sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808026457/cf2216Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C10H9N4O2S)2(C4H11N)2]·5H2OF000 = 1594
Mr = 790.04Dx = 1.347 Mg m3
Orthorhombic, PbcnMo Kα radiation λ = 0.71069 Å
Hall symbol: -P 2n 2abCell parameters from 30097 reflections
a = 22.623 (6) Åθ = 1.8–27.1º
b = 10.342 (5) ŵ = 0.74 mm1
c = 16.250 (6) ÅT = 296 K
V = 3802 (2) Å3Prism, blue
Z = 40.34 × 0.21 × 0.19 mm
Stoe IPDS2 diffractometer4235 independent reflections
Radiation source: fine-focus sealed tube2098 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.085
T = 296 Kθmax = 27.2º
rotation method scansθmin = 1.8º
Absorption correction: integration(X-RED32; Stoe & Cie, 2002)h = −28→28
Tmin = 0.821, Tmax = 0.900k = −13→13
57960 measured reflectionsl = −20→20
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048H-atom parameters constrained
wR(F2) = 0.141  w = 1/[σ2(Fo2) + (0.0787P)2] where P = (Fo2 + 2Fc2)/3
S = 0.90(Δ/σ)max < 0.001
4235 reflectionsΔρmax = 0.65 e Å3
234 parametersΔρmin = −0.45 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.33524 (14)0.7316 (3)0.45323 (19)0.0565 (8)
C20.29637 (16)0.8185 (4)0.4879 (2)0.0684 (9)
H20.31090.89290.51290.082*
C30.23634 (16)0.7970 (4)0.4860 (2)0.0752 (10)
H30.21080.85590.51070.090*
C40.21358 (15)0.6879 (4)0.4473 (2)0.0689 (9)
C50.25293 (17)0.6011 (4)0.4128 (2)0.0728 (10)
H50.23870.52710.38700.087*
C60.31255 (15)0.6227 (3)0.4160 (2)0.0664 (9)
H60.33820.56280.39270.080*
C70.41743 (13)0.8242 (3)0.3032 (2)0.0565 (8)
C80.36943 (17)0.9966 (4)0.2474 (3)0.0800 (11)
H80.34521.06860.25360.096*
C90.39032 (17)0.9691 (4)0.1702 (3)0.0847 (12)
H90.38021.01900.12470.102*
C100.42700 (16)0.8638 (4)0.1637 (2)0.0745 (10)
H100.44270.84260.11250.089*
C110.3906 (2)0.4981 (5)0.2216 (4)0.124 (2)
H11A0.37060.58010.21360.149*
H11B0.39250.48410.28060.149*
C120.3518 (2)0.4000 (5)0.1892 (4)0.1116 (17)
H12A0.37400.31990.18540.134*
H12B0.34090.42460.13370.134*
C13A0.2962 (4)0.3733 (8)0.2362 (5)0.088 (2)0.605 (8)
H13A0.27640.45490.24610.105*0.605 (8)
H13B0.30700.33760.28930.105*0.605 (8)
C13B0.2848 (5)0.4111 (13)0.1823 (9)0.088 (2)0.395 (8)
H13C0.27090.48510.21340.105*0.395 (8)
H13D0.27330.42230.12530.105*0.395 (8)
C14A0.2505 (12)0.277 (3)0.1934 (18)0.108 (4)0.605 (8)
H14A0.21690.26580.22860.162*0.605 (8)
H14B0.26920.19540.18410.162*0.605 (8)
H14C0.23800.31320.14180.162*0.605 (8)
C14B0.261 (2)0.299 (4)0.213 (3)0.108 (4)0.395 (8)
H14D0.21860.30430.21150.162*0.395 (8)
H14E0.27360.28790.26930.162*0.395 (8)
H14F0.27410.22700.18100.162*0.395 (8)
N10.43499 (11)0.7422 (3)0.36300 (16)0.0586 (7)
N20.38163 (12)0.9265 (3)0.31428 (17)0.0635 (7)
N30.44067 (12)0.7910 (3)0.22883 (16)0.0596 (7)
N40.44912 (14)0.5158 (3)0.1947 (2)0.0896 (10)
H4A0.44780.53560.14080.108*
H4B0.46770.43910.19900.108*
N50.15418 (15)0.6661 (4)0.4447 (2)0.1001 (11)
H5A0.14070.59760.42130.120*
H5B0.13020.72090.46640.120*
O10.42208 (10)0.8844 (2)0.48919 (14)0.0690 (6)
O20.43907 (10)0.6530 (2)0.49927 (15)0.0731 (7)
O30.02149 (14)0.6126 (3)0.4017 (2)0.1193 (11)
O40.00000.7493 (5)0.25000.151 (2)
O50.43200 (14)0.3833 (3)0.5011 (3)0.1410 (15)
S20.41156 (4)0.75774 (8)0.45398 (5)0.0588 (2)
Cu10.50000.64823 (6)0.25000.0647 (2)
U11U22U33U12U13U23
C10.0482 (17)0.062 (2)0.0590 (17)−0.0025 (16)0.0034 (15)0.0033 (16)
C20.056 (2)0.068 (2)0.081 (2)−0.0050 (18)0.0009 (18)−0.0092 (19)
C30.053 (2)0.080 (2)0.093 (3)0.0044 (19)0.0133 (19)−0.005 (2)
C40.051 (2)0.078 (2)0.078 (2)−0.0120 (19)−0.0005 (17)0.007 (2)
C50.059 (2)0.077 (2)0.083 (2)−0.013 (2)−0.0008 (19)−0.005 (2)
C60.054 (2)0.069 (2)0.076 (2)−0.0018 (17)0.0045 (17)−0.0079 (18)
C70.0426 (17)0.064 (2)0.063 (2)−0.0072 (16)0.0046 (15)0.0020 (16)
C80.067 (2)0.084 (3)0.088 (3)0.012 (2)−0.003 (2)0.020 (2)
C90.068 (2)0.105 (3)0.081 (3)0.004 (2)−0.003 (2)0.028 (2)
C100.057 (2)0.100 (3)0.066 (2)−0.001 (2)0.0069 (17)0.007 (2)
C110.089 (3)0.096 (3)0.187 (6)−0.029 (3)0.050 (3)−0.047 (4)
C120.080 (3)0.108 (4)0.146 (4)−0.006 (3)0.002 (3)−0.049 (3)
C13A0.079 (4)0.092 (5)0.092 (5)−0.012 (4)0.002 (4)−0.018 (4)
C13B0.079 (4)0.092 (5)0.092 (5)−0.012 (4)0.002 (4)−0.018 (4)
C14A0.081 (11)0.103 (9)0.140 (15)−0.017 (6)−0.014 (8)−0.034 (8)
C14B0.081 (11)0.103 (9)0.140 (15)−0.017 (6)−0.014 (8)−0.034 (8)
N10.0480 (15)0.0615 (16)0.0664 (16)0.0056 (13)0.0059 (12)0.0030 (14)
N20.0588 (17)0.0636 (17)0.0679 (17)0.0086 (14)0.0022 (14)0.0019 (15)
N30.0506 (16)0.0697 (17)0.0585 (16)−0.0061 (14)0.0041 (12)−0.0026 (14)
N40.070 (2)0.087 (2)0.112 (3)0.0022 (18)0.0034 (19)−0.021 (2)
N50.0505 (18)0.110 (3)0.140 (3)−0.0131 (19)0.004 (2)−0.009 (2)
O10.0574 (14)0.0741 (15)0.0755 (14)−0.0064 (12)−0.0044 (12)−0.0138 (12)
O20.0606 (15)0.0799 (16)0.0787 (15)0.0053 (13)−0.0093 (12)0.0243 (13)
O30.079 (2)0.125 (3)0.155 (3)0.0017 (19)0.018 (2)−0.008 (2)
O40.174 (6)0.091 (3)0.188 (6)0.0000.053 (4)0.000
O50.073 (2)0.096 (2)0.253 (5)0.0007 (18)−0.015 (3)−0.001 (3)
S20.0469 (4)0.0667 (5)0.0629 (5)−0.0008 (4)−0.0020 (4)0.0035 (4)
Cu10.0516 (3)0.0697 (4)0.0726 (4)0.0000.0051 (3)0.000
C1—C61.377 (5)C12—C13B1.524 (13)
C1—C21.378 (5)C12—H12A0.970
C1—S21.748 (3)C12—H12B0.970
C2—C31.377 (5)C13A—C14A1.592 (16)
C2—H20.930C13A—H13A0.970
C3—C41.391 (5)C13A—H13B0.970
C3—H30.930C13B—C14B1.37 (5)
C4—N51.363 (5)C13B—H13C0.970
C4—C51.382 (5)C13B—H13D0.970
C5—C61.368 (5)C14A—H14A0.960
C5—H50.930C14A—H14B0.960
C6—H60.930C14A—H14C0.960
C7—N21.344 (4)C14B—H14D0.960
C7—N11.351 (4)C14B—H14E0.960
C7—N31.361 (4)C14B—H14F0.960
C8—N21.334 (5)N1—S21.579 (3)
C8—C91.371 (6)N3—Cu12.025 (3)
C8—H80.930N4—Cu12.002 (3)
C9—C101.373 (5)N4—H4A0.900
C9—H90.930N4—H4B0.900
C10—N31.336 (4)N5—H5A0.860
C10—H100.930N5—H5B0.860
C11—N41.407 (5)O1—S21.449 (2)
C11—C121.441 (6)O2—S21.450 (2)
C11—H11A0.970Cu1—N4i2.002 (3)
C11—H11B0.970Cu1—N3i2.025 (3)
C12—C13A1.496 (9)
C6—C1—C2118.4 (3)C12—C13A—H13B108.3
C6—C1—S2119.9 (3)C14A—C13A—H13B108.3
C2—C1—S2121.8 (3)H13A—C13A—H13B107.4
C3—C2—C1121.0 (3)C14B—C13B—C12107 (2)
C3—C2—H2119.5C14B—C13B—H13C110.2
C1—C2—H2119.5C12—C13B—H13C110.2
C2—C3—C4120.4 (4)C14B—C13B—H13D110.2
C2—C3—H3119.8C12—C13B—H13D110.2
C4—C3—H3119.8H13C—C13B—H13D108.5
N5—C4—C5121.0 (4)C13A—C14A—H14A109.5
N5—C4—C3120.8 (4)C13A—C14A—H14B109.5
C5—C4—C3118.1 (3)H14A—C14A—H14B109.5
C6—C5—C4120.9 (4)C13A—C14A—H14C109.5
C6—C5—H5119.6H14A—C14A—H14C109.5
C4—C5—H5119.6H14B—C14A—H14C109.5
C5—C6—C1121.2 (3)C13B—C14B—H14D109.5
C5—C6—H6119.4C13B—C14B—H14E109.5
C1—C6—H6119.4H14D—C14B—H14E109.5
N2—C7—N1125.1 (3)C13B—C14B—H14F109.5
N2—C7—N3123.4 (3)H14D—C14B—H14F109.5
N1—C7—N3111.5 (3)H14E—C14B—H14F109.5
N2—C8—C9124.2 (4)C7—N1—S2120.8 (2)
N2—C8—H8117.9C8—N2—C7116.2 (3)
C9—C8—H8117.9C10—N3—C7118.1 (3)
C8—C9—C10116.3 (4)C10—N3—Cu1134.4 (2)
C8—C9—H9121.8C7—N3—Cu1106.8 (2)
C10—C9—H9121.8C11—N4—Cu1119.4 (3)
N3—C10—C9121.7 (4)C11—N4—H4A107.5
N3—C10—H10119.1Cu1—N4—H4A107.5
C9—C10—H10119.1C11—N4—H4B107.5
N4—C11—C12123.4 (4)Cu1—N4—H4B107.5
N4—C11—H11A106.5H4A—N4—H4B107.0
C12—C11—H11A106.5C4—N5—H5A120.0
N4—C11—H11B106.5C4—N5—H5B120.0
C12—C11—H11B106.5H5A—N5—H5B120.0
H11A—C11—H11B106.5O1—S2—O2113.88 (15)
C11—C12—C13A117.0 (5)O1—S2—N1113.99 (15)
C11—C12—C13B125.3 (6)O2—S2—N1104.77 (15)
C11—C12—H12A108.0O1—S2—C1107.76 (15)
C13A—C12—H12A108.0O2—S2—C1108.16 (15)
C13B—C12—H12A125.1N1—S2—C1108.02 (15)
C11—C12—H12B108.0N4—Cu1—N4i93.7 (2)
C13A—C12—H12B108.0N4—Cu1—N3i162.98 (13)
C13B—C12—H12B70.1N4i—Cu1—N3i92.38 (13)
H12A—C12—H12B107.3N4—Cu1—N392.38 (13)
C12—C13A—C14A116.0 (14)N4i—Cu1—N3162.98 (13)
C12—C13A—H13A108.3N3i—Cu1—N386.36 (16)
C14A—C13A—H13A108.3
C6—C1—C2—C30.5 (5)C9—C10—N3—Cu1−169.6 (3)
S2—C1—C2—C3179.3 (3)N2—C7—N3—C10−0.2 (5)
C1—C2—C3—C4−1.4 (6)N1—C7—N3—C10179.9 (3)
C2—C3—C4—N5−179.6 (4)N2—C7—N3—Cu1171.8 (2)
C2—C3—C4—C51.4 (6)N1—C7—N3—Cu1−8.1 (3)
N5—C4—C5—C6−179.5 (4)C12—C11—N4—Cu1−176.0 (5)
C3—C4—C5—C6−0.5 (6)C7—N1—S2—O1−55.6 (3)
C4—C5—C6—C1−0.4 (6)C7—N1—S2—O2179.3 (2)
C2—C1—C6—C50.4 (5)C7—N1—S2—C164.1 (3)
S2—C1—C6—C5−178.4 (3)C6—C1—S2—O1174.2 (3)
N2—C8—C9—C10−1.4 (6)C2—C1—S2—O1−4.6 (3)
C8—C9—C10—N31.1 (6)C6—C1—S2—O2−62.3 (3)
N4—C11—C12—C13A166.6 (7)C2—C1—S2—O2118.9 (3)
N4—C11—C12—C13B−149.2 (9)C6—C1—S2—N150.6 (3)
C11—C12—C13A—C14A172.7 (14)C2—C1—S2—N1−128.2 (3)
C13B—C12—C13A—C14A59.0 (16)C11—N4—Cu1—N4i108.9 (5)
C11—C12—C13B—C14B−132 (2)C11—N4—Cu1—N3i−140.5 (5)
C13A—C12—C13B—C14B−42 (2)C11—N4—Cu1—N3−55.2 (4)
N2—C7—N1—S22.7 (4)C10—N3—Cu1—N4−79.3 (4)
N3—C7—N1—S2−177.4 (2)C7—N3—Cu1—N4110.6 (2)
C9—C8—N2—C70.9 (6)C10—N3—Cu1—N4i169.9 (4)
N1—C7—N2—C8179.8 (3)C7—N3—Cu1—N4i−0.1 (5)
N3—C7—N2—C8−0.1 (5)C10—N3—Cu1—N3i83.7 (3)
C9—C10—N3—C7−0.4 (5)C7—N3—Cu1—N3i−86.4 (2)
D—H···AD—HH···AD···AD—H···A
N5—H5A···N2ii0.862.533.359 (5)162
N4—H4A···O5iii0.902.453.337 (6)171
N4—H4B···O4iv0.902.253.119 (6)161
N5—H5B···O5v0.862.263.113 (5)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N5—H5A⋯N2i0.862.533.359 (5)162
N4—H4A⋯O5ii0.902.453.337 (6)171
N4—H4B⋯O4iii0.902.253.119 (6)161
N5—H5B⋯O5iv0.862.263.113 (5)170

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
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1.  Bis[4-amino-N-(pyrimidin-2-yl)benzene-sulfonamidato]-κN,N';κN-aqua-bis-(dimethyl-formamide-κO)cadmium(II) monohydrate.

Authors:  G M Golzar Hossain
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-28

2.  cis-Bis[4-amino-N-(pyrimidin-2-yl)benzene-sulfonamido-κN,N']bis-(dimethyl sulfoxide-κO)cadmium.

Authors:  G M Golzar Hossain
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-26

3.  Bis[4-amino-N-(pyrimidin-2-yl-κN)benzene-sulfonamidato-κN](4,4'-di-methyl-2,2'-bipyridine-κN,N')cadmium dimethyl-formamide disolvate.

Authors:  G M Golzar Hossain; A J Amoroso
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-10
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