| Literature DB >> 21201631 |
Hümeyra Paşaoğlu, Gökhan Kaştaş, Zerrin Heren, Orhan Büyükgüngör.
Abstract
In the title compound {systematic name: cis-bis-[4-amino-N-(pyrimidin-2-yl)benzene-sulfonamidato-κ(2)N,N']bis-(butyl-amine-κN)copper(II) penta-hydrate}, [Cu(C(10)H(9)N(4)O(2)S)(2)(C(4)H(11)N)(2)]·5H(2)O or [Cu(sdz)(2)(ba)(2)]·5H(2)O [ba is butyl-amine and sdz = sulfadiazine(1-)], the copper(II) cation is six-coordinated by four N atoms of two sulfadiazine ligands and two N atoms of butyl-amine ligands. The copper(II) ion and one of the water mol-ecules lie on twofold rotation axes. One of the butyl groups is disordered over two sites, with occupancies of 0.395 (8) and 0.605 (8). The geometry around the S atom is distorted tetra-hedral. The crystal structure involves inter-molecular N-H⋯N and N-H⋯O hydrogen bonds. N-H⋯N hydrogen bonds between sdz ligands lead to a sheet structure parallel to the ab plane.Entities:
Year: 2008 PMID: 21201631 PMCID: PMC2960652 DOI: 10.1107/S1600536808026457
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cu(C10H9N4O2S)2(C4H11N)2]·5H2O | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2n 2ab | Cell parameters from 30097 reflections |
| θ = 1.8–27.1º | |
| µ = 0.74 mm−1 | |
| Prism, blue | |
| 0.34 × 0.21 × 0.19 mm |
| Stoe IPDS2 diffractometer | 4235 independent reflections |
| Radiation source: fine-focus sealed tube | 2098 reflections with |
| Monochromator: graphite | |
| θmax = 27.2º | |
| rotation method scans | θmin = 1.8º |
| Absorption correction: integration(X-RED32; Stoe & Cie, 2002) | |
| 57960 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max < 0.001 | |
| 4235 reflections | Δρmax = 0.65 e Å−3 |
| 234 parameters | Δρmin = −0.45 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| C1 | 0.33524 (14) | 0.7316 (3) | 0.45323 (19) | 0.0565 (8) | |
| C2 | 0.29637 (16) | 0.8185 (4) | 0.4879 (2) | 0.0684 (9) | |
| H2 | 0.3109 | 0.8929 | 0.5129 | 0.082* | |
| C3 | 0.23634 (16) | 0.7970 (4) | 0.4860 (2) | 0.0752 (10) | |
| H3 | 0.2108 | 0.8559 | 0.5107 | 0.090* | |
| C4 | 0.21358 (15) | 0.6879 (4) | 0.4473 (2) | 0.0689 (9) | |
| C5 | 0.25293 (17) | 0.6011 (4) | 0.4128 (2) | 0.0728 (10) | |
| H5 | 0.2387 | 0.5271 | 0.3870 | 0.087* | |
| C6 | 0.31255 (15) | 0.6227 (3) | 0.4160 (2) | 0.0664 (9) | |
| H6 | 0.3382 | 0.5628 | 0.3927 | 0.080* | |
| C7 | 0.41743 (13) | 0.8242 (3) | 0.3032 (2) | 0.0565 (8) | |
| C8 | 0.36943 (17) | 0.9966 (4) | 0.2474 (3) | 0.0800 (11) | |
| H8 | 0.3452 | 1.0686 | 0.2536 | 0.096* | |
| C9 | 0.39032 (17) | 0.9691 (4) | 0.1702 (3) | 0.0847 (12) | |
| H9 | 0.3802 | 1.0190 | 0.1247 | 0.102* | |
| C10 | 0.42700 (16) | 0.8638 (4) | 0.1637 (2) | 0.0745 (10) | |
| H10 | 0.4427 | 0.8426 | 0.1125 | 0.089* | |
| C11 | 0.3906 (2) | 0.4981 (5) | 0.2216 (4) | 0.124 (2) | |
| H11A | 0.3706 | 0.5801 | 0.2136 | 0.149* | |
| H11B | 0.3925 | 0.4841 | 0.2806 | 0.149* | |
| C12 | 0.3518 (2) | 0.4000 (5) | 0.1892 (4) | 0.1116 (17) | |
| H12A | 0.3740 | 0.3199 | 0.1854 | 0.134* | |
| H12B | 0.3409 | 0.4246 | 0.1337 | 0.134* | |
| C13A | 0.2962 (4) | 0.3733 (8) | 0.2362 (5) | 0.088 (2) | 0.605 (8) |
| H13A | 0.2764 | 0.4549 | 0.2461 | 0.105* | 0.605 (8) |
| H13B | 0.3070 | 0.3376 | 0.2893 | 0.105* | 0.605 (8) |
| C13B | 0.2848 (5) | 0.4111 (13) | 0.1823 (9) | 0.088 (2) | 0.395 (8) |
| H13C | 0.2709 | 0.4851 | 0.2134 | 0.105* | 0.395 (8) |
| H13D | 0.2733 | 0.4223 | 0.1253 | 0.105* | 0.395 (8) |
| C14A | 0.2505 (12) | 0.277 (3) | 0.1934 (18) | 0.108 (4) | 0.605 (8) |
| H14A | 0.2169 | 0.2658 | 0.2286 | 0.162* | 0.605 (8) |
| H14B | 0.2692 | 0.1954 | 0.1841 | 0.162* | 0.605 (8) |
| H14C | 0.2380 | 0.3132 | 0.1418 | 0.162* | 0.605 (8) |
| C14B | 0.261 (2) | 0.299 (4) | 0.213 (3) | 0.108 (4) | 0.395 (8) |
| H14D | 0.2186 | 0.3043 | 0.2115 | 0.162* | 0.395 (8) |
| H14E | 0.2736 | 0.2879 | 0.2693 | 0.162* | 0.395 (8) |
| H14F | 0.2741 | 0.2270 | 0.1810 | 0.162* | 0.395 (8) |
| N1 | 0.43499 (11) | 0.7422 (3) | 0.36300 (16) | 0.0586 (7) | |
| N2 | 0.38163 (12) | 0.9265 (3) | 0.31428 (17) | 0.0635 (7) | |
| N3 | 0.44067 (12) | 0.7910 (3) | 0.22883 (16) | 0.0596 (7) | |
| N4 | 0.44912 (14) | 0.5158 (3) | 0.1947 (2) | 0.0896 (10) | |
| H4A | 0.4478 | 0.5356 | 0.1408 | 0.108* | |
| H4B | 0.4677 | 0.4391 | 0.1990 | 0.108* | |
| N5 | 0.15418 (15) | 0.6661 (4) | 0.4447 (2) | 0.1001 (11) | |
| H5A | 0.1407 | 0.5976 | 0.4213 | 0.120* | |
| H5B | 0.1302 | 0.7209 | 0.4664 | 0.120* | |
| O1 | 0.42208 (10) | 0.8844 (2) | 0.48919 (14) | 0.0690 (6) | |
| O2 | 0.43907 (10) | 0.6530 (2) | 0.49927 (15) | 0.0731 (7) | |
| O3 | 0.02149 (14) | 0.6126 (3) | 0.4017 (2) | 0.1193 (11) | |
| O4 | 0.0000 | 0.7493 (5) | 0.2500 | 0.151 (2) | |
| O5 | 0.43200 (14) | 0.3833 (3) | 0.5011 (3) | 0.1410 (15) | |
| S2 | 0.41156 (4) | 0.75774 (8) | 0.45398 (5) | 0.0588 (2) | |
| Cu1 | 0.5000 | 0.64823 (6) | 0.2500 | 0.0647 (2) |
| C1 | 0.0482 (17) | 0.062 (2) | 0.0590 (17) | −0.0025 (16) | 0.0034 (15) | 0.0033 (16) |
| C2 | 0.056 (2) | 0.068 (2) | 0.081 (2) | −0.0050 (18) | 0.0009 (18) | −0.0092 (19) |
| C3 | 0.053 (2) | 0.080 (2) | 0.093 (3) | 0.0044 (19) | 0.0133 (19) | −0.005 (2) |
| C4 | 0.051 (2) | 0.078 (2) | 0.078 (2) | −0.0120 (19) | −0.0005 (17) | 0.007 (2) |
| C5 | 0.059 (2) | 0.077 (2) | 0.083 (2) | −0.013 (2) | −0.0008 (19) | −0.005 (2) |
| C6 | 0.054 (2) | 0.069 (2) | 0.076 (2) | −0.0018 (17) | 0.0045 (17) | −0.0079 (18) |
| C7 | 0.0426 (17) | 0.064 (2) | 0.063 (2) | −0.0072 (16) | 0.0046 (15) | 0.0020 (16) |
| C8 | 0.067 (2) | 0.084 (3) | 0.088 (3) | 0.012 (2) | −0.003 (2) | 0.020 (2) |
| C9 | 0.068 (2) | 0.105 (3) | 0.081 (3) | 0.004 (2) | −0.003 (2) | 0.028 (2) |
| C10 | 0.057 (2) | 0.100 (3) | 0.066 (2) | −0.001 (2) | 0.0069 (17) | 0.007 (2) |
| C11 | 0.089 (3) | 0.096 (3) | 0.187 (6) | −0.029 (3) | 0.050 (3) | −0.047 (4) |
| C12 | 0.080 (3) | 0.108 (4) | 0.146 (4) | −0.006 (3) | 0.002 (3) | −0.049 (3) |
| C13A | 0.079 (4) | 0.092 (5) | 0.092 (5) | −0.012 (4) | 0.002 (4) | −0.018 (4) |
| C13B | 0.079 (4) | 0.092 (5) | 0.092 (5) | −0.012 (4) | 0.002 (4) | −0.018 (4) |
| C14A | 0.081 (11) | 0.103 (9) | 0.140 (15) | −0.017 (6) | −0.014 (8) | −0.034 (8) |
| C14B | 0.081 (11) | 0.103 (9) | 0.140 (15) | −0.017 (6) | −0.014 (8) | −0.034 (8) |
| N1 | 0.0480 (15) | 0.0615 (16) | 0.0664 (16) | 0.0056 (13) | 0.0059 (12) | 0.0030 (14) |
| N2 | 0.0588 (17) | 0.0636 (17) | 0.0679 (17) | 0.0086 (14) | 0.0022 (14) | 0.0019 (15) |
| N3 | 0.0506 (16) | 0.0697 (17) | 0.0585 (16) | −0.0061 (14) | 0.0041 (12) | −0.0026 (14) |
| N4 | 0.070 (2) | 0.087 (2) | 0.112 (3) | 0.0022 (18) | 0.0034 (19) | −0.021 (2) |
| N5 | 0.0505 (18) | 0.110 (3) | 0.140 (3) | −0.0131 (19) | 0.004 (2) | −0.009 (2) |
| O1 | 0.0574 (14) | 0.0741 (15) | 0.0755 (14) | −0.0064 (12) | −0.0044 (12) | −0.0138 (12) |
| O2 | 0.0606 (15) | 0.0799 (16) | 0.0787 (15) | 0.0053 (13) | −0.0093 (12) | 0.0243 (13) |
| O3 | 0.079 (2) | 0.125 (3) | 0.155 (3) | 0.0017 (19) | 0.018 (2) | −0.008 (2) |
| O4 | 0.174 (6) | 0.091 (3) | 0.188 (6) | 0.000 | 0.053 (4) | 0.000 |
| O5 | 0.073 (2) | 0.096 (2) | 0.253 (5) | 0.0007 (18) | −0.015 (3) | −0.001 (3) |
| S2 | 0.0469 (4) | 0.0667 (5) | 0.0629 (5) | −0.0008 (4) | −0.0020 (4) | 0.0035 (4) |
| Cu1 | 0.0516 (3) | 0.0697 (4) | 0.0726 (4) | 0.000 | 0.0051 (3) | 0.000 |
| C1—C6 | 1.377 (5) | C12—C13B | 1.524 (13) |
| C1—C2 | 1.378 (5) | C12—H12A | 0.970 |
| C1—S2 | 1.748 (3) | C12—H12B | 0.970 |
| C2—C3 | 1.377 (5) | C13A—C14A | 1.592 (16) |
| C2—H2 | 0.930 | C13A—H13A | 0.970 |
| C3—C4 | 1.391 (5) | C13A—H13B | 0.970 |
| C3—H3 | 0.930 | C13B—C14B | 1.37 (5) |
| C4—N5 | 1.363 (5) | C13B—H13C | 0.970 |
| C4—C5 | 1.382 (5) | C13B—H13D | 0.970 |
| C5—C6 | 1.368 (5) | C14A—H14A | 0.960 |
| C5—H5 | 0.930 | C14A—H14B | 0.960 |
| C6—H6 | 0.930 | C14A—H14C | 0.960 |
| C7—N2 | 1.344 (4) | C14B—H14D | 0.960 |
| C7—N1 | 1.351 (4) | C14B—H14E | 0.960 |
| C7—N3 | 1.361 (4) | C14B—H14F | 0.960 |
| C8—N2 | 1.334 (5) | N1—S2 | 1.579 (3) |
| C8—C9 | 1.371 (6) | N3—Cu1 | 2.025 (3) |
| C8—H8 | 0.930 | N4—Cu1 | 2.002 (3) |
| C9—C10 | 1.373 (5) | N4—H4A | 0.900 |
| C9—H9 | 0.930 | N4—H4B | 0.900 |
| C10—N3 | 1.336 (4) | N5—H5A | 0.860 |
| C10—H10 | 0.930 | N5—H5B | 0.860 |
| C11—N4 | 1.407 (5) | O1—S2 | 1.449 (2) |
| C11—C12 | 1.441 (6) | O2—S2 | 1.450 (2) |
| C11—H11A | 0.970 | Cu1—N4i | 2.002 (3) |
| C11—H11B | 0.970 | Cu1—N3i | 2.025 (3) |
| C12—C13A | 1.496 (9) | ||
| C6—C1—C2 | 118.4 (3) | C12—C13A—H13B | 108.3 |
| C6—C1—S2 | 119.9 (3) | C14A—C13A—H13B | 108.3 |
| C2—C1—S2 | 121.8 (3) | H13A—C13A—H13B | 107.4 |
| C3—C2—C1 | 121.0 (3) | C14B—C13B—C12 | 107 (2) |
| C3—C2—H2 | 119.5 | C14B—C13B—H13C | 110.2 |
| C1—C2—H2 | 119.5 | C12—C13B—H13C | 110.2 |
| C2—C3—C4 | 120.4 (4) | C14B—C13B—H13D | 110.2 |
| C2—C3—H3 | 119.8 | C12—C13B—H13D | 110.2 |
| C4—C3—H3 | 119.8 | H13C—C13B—H13D | 108.5 |
| N5—C4—C5 | 121.0 (4) | C13A—C14A—H14A | 109.5 |
| N5—C4—C3 | 120.8 (4) | C13A—C14A—H14B | 109.5 |
| C5—C4—C3 | 118.1 (3) | H14A—C14A—H14B | 109.5 |
| C6—C5—C4 | 120.9 (4) | C13A—C14A—H14C | 109.5 |
| C6—C5—H5 | 119.6 | H14A—C14A—H14C | 109.5 |
| C4—C5—H5 | 119.6 | H14B—C14A—H14C | 109.5 |
| C5—C6—C1 | 121.2 (3) | C13B—C14B—H14D | 109.5 |
| C5—C6—H6 | 119.4 | C13B—C14B—H14E | 109.5 |
| C1—C6—H6 | 119.4 | H14D—C14B—H14E | 109.5 |
| N2—C7—N1 | 125.1 (3) | C13B—C14B—H14F | 109.5 |
| N2—C7—N3 | 123.4 (3) | H14D—C14B—H14F | 109.5 |
| N1—C7—N3 | 111.5 (3) | H14E—C14B—H14F | 109.5 |
| N2—C8—C9 | 124.2 (4) | C7—N1—S2 | 120.8 (2) |
| N2—C8—H8 | 117.9 | C8—N2—C7 | 116.2 (3) |
| C9—C8—H8 | 117.9 | C10—N3—C7 | 118.1 (3) |
| C8—C9—C10 | 116.3 (4) | C10—N3—Cu1 | 134.4 (2) |
| C8—C9—H9 | 121.8 | C7—N3—Cu1 | 106.8 (2) |
| C10—C9—H9 | 121.8 | C11—N4—Cu1 | 119.4 (3) |
| N3—C10—C9 | 121.7 (4) | C11—N4—H4A | 107.5 |
| N3—C10—H10 | 119.1 | Cu1—N4—H4A | 107.5 |
| C9—C10—H10 | 119.1 | C11—N4—H4B | 107.5 |
| N4—C11—C12 | 123.4 (4) | Cu1—N4—H4B | 107.5 |
| N4—C11—H11A | 106.5 | H4A—N4—H4B | 107.0 |
| C12—C11—H11A | 106.5 | C4—N5—H5A | 120.0 |
| N4—C11—H11B | 106.5 | C4—N5—H5B | 120.0 |
| C12—C11—H11B | 106.5 | H5A—N5—H5B | 120.0 |
| H11A—C11—H11B | 106.5 | O1—S2—O2 | 113.88 (15) |
| C11—C12—C13A | 117.0 (5) | O1—S2—N1 | 113.99 (15) |
| C11—C12—C13B | 125.3 (6) | O2—S2—N1 | 104.77 (15) |
| C11—C12—H12A | 108.0 | O1—S2—C1 | 107.76 (15) |
| C13A—C12—H12A | 108.0 | O2—S2—C1 | 108.16 (15) |
| C13B—C12—H12A | 125.1 | N1—S2—C1 | 108.02 (15) |
| C11—C12—H12B | 108.0 | N4—Cu1—N4i | 93.7 (2) |
| C13A—C12—H12B | 108.0 | N4—Cu1—N3i | 162.98 (13) |
| C13B—C12—H12B | 70.1 | N4i—Cu1—N3i | 92.38 (13) |
| H12A—C12—H12B | 107.3 | N4—Cu1—N3 | 92.38 (13) |
| C12—C13A—C14A | 116.0 (14) | N4i—Cu1—N3 | 162.98 (13) |
| C12—C13A—H13A | 108.3 | N3i—Cu1—N3 | 86.36 (16) |
| C14A—C13A—H13A | 108.3 | ||
| C6—C1—C2—C3 | 0.5 (5) | C9—C10—N3—Cu1 | −169.6 (3) |
| S2—C1—C2—C3 | 179.3 (3) | N2—C7—N3—C10 | −0.2 (5) |
| C1—C2—C3—C4 | −1.4 (6) | N1—C7—N3—C10 | 179.9 (3) |
| C2—C3—C4—N5 | −179.6 (4) | N2—C7—N3—Cu1 | 171.8 (2) |
| C2—C3—C4—C5 | 1.4 (6) | N1—C7—N3—Cu1 | −8.1 (3) |
| N5—C4—C5—C6 | −179.5 (4) | C12—C11—N4—Cu1 | −176.0 (5) |
| C3—C4—C5—C6 | −0.5 (6) | C7—N1—S2—O1 | −55.6 (3) |
| C4—C5—C6—C1 | −0.4 (6) | C7—N1—S2—O2 | 179.3 (2) |
| C2—C1—C6—C5 | 0.4 (5) | C7—N1—S2—C1 | 64.1 (3) |
| S2—C1—C6—C5 | −178.4 (3) | C6—C1—S2—O1 | 174.2 (3) |
| N2—C8—C9—C10 | −1.4 (6) | C2—C1—S2—O1 | −4.6 (3) |
| C8—C9—C10—N3 | 1.1 (6) | C6—C1—S2—O2 | −62.3 (3) |
| N4—C11—C12—C13A | 166.6 (7) | C2—C1—S2—O2 | 118.9 (3) |
| N4—C11—C12—C13B | −149.2 (9) | C6—C1—S2—N1 | 50.6 (3) |
| C11—C12—C13A—C14A | 172.7 (14) | C2—C1—S2—N1 | −128.2 (3) |
| C13B—C12—C13A—C14A | 59.0 (16) | C11—N4—Cu1—N4i | 108.9 (5) |
| C11—C12—C13B—C14B | −132 (2) | C11—N4—Cu1—N3i | −140.5 (5) |
| C13A—C12—C13B—C14B | −42 (2) | C11—N4—Cu1—N3 | −55.2 (4) |
| N2—C7—N1—S2 | 2.7 (4) | C10—N3—Cu1—N4 | −79.3 (4) |
| N3—C7—N1—S2 | −177.4 (2) | C7—N3—Cu1—N4 | 110.6 (2) |
| C9—C8—N2—C7 | 0.9 (6) | C10—N3—Cu1—N4i | 169.9 (4) |
| N1—C7—N2—C8 | 179.8 (3) | C7—N3—Cu1—N4i | −0.1 (5) |
| N3—C7—N2—C8 | −0.1 (5) | C10—N3—Cu1—N3i | 83.7 (3) |
| C9—C10—N3—C7 | −0.4 (5) | C7—N3—Cu1—N3i | −86.4 (2) |
| H··· | ||||
| N5—H5A···N2ii | 0.86 | 2.53 | 3.359 (5) | 162 |
| N4—H4A···O5iii | 0.90 | 2.45 | 3.337 (6) | 171 |
| N4—H4B···O4iv | 0.90 | 2.25 | 3.119 (6) | 161 |
| N5—H5B···O5v | 0.86 | 2.26 | 3.113 (5) | 170 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N5—H5 | 0.86 | 2.53 | 3.359 (5) | 162 |
| N4—H4 | 0.90 | 2.45 | 3.337 (6) | 171 |
| N4—H4 | 0.90 | 2.25 | 3.119 (6) | 161 |
| N5—H5 | 0.86 | 2.26 | 3.113 (5) | 170 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .