| Literature DB >> 21753940 |
Zhong-Jing Huang1, Jin-Niu Tang, Zhi-Rong Luo, Dai-Yin Wang, Huan Wei.
Abstract
In the title compound, {[Na(C(8)H(9)N(2)O(4))(H(2)O)]·0.5H(2)O}(n), the Na(+) ion is coordinated by two bridging water mol-ecules, one N atom and three O atoms from three 4-carb-oxy-2-propyl-1H-imidazole-5-carboxyl-ate (H(2)pimdc) ligands. Adjacent Na(+) ions are linked alternately by two water O atoms and two carb-oxy O atoms into a chain along [001]. These chains are connected through the coordination of the carboxyl-ate O atoms to the Na(+) ions, forming a three-dimensional structure. An intra-molecular O-H⋯O hydrogen bond and inter-molecular N-H⋯O and O-H⋯O hydrogen bonds are present in the crystal structure.Entities:
Year: 2011 PMID: 21753940 PMCID: PMC3099890 DOI: 10.1107/S1600536811007732
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Na(C8H9N2O4)(H2O)]·0.5H2O | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 2142 reflections |
| θ = 2.4–26.8° | |
| µ = 0.15 mm−1 | |
| β = 118.364 (3)° | Block, colorless |
| 0.52 × 0.47 × 0.44 mm | |
| Bruker APEX CCD diffractometer | 1986 independent reflections |
| Radiation source: fine-focus sealed tube | 1669 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.0°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 5971 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1986 reflections | (Δ/σ)max < 0.001 |
| 152 parameters | Δρmax = 0.23 e Å−3 |
| 0 restraints | Δρmin = −0.21 e Å−3 |
| O3 | 0.48386 (8) | 0.25613 (8) | 0.57288 (12) | 0.0379 (3) | |
| C5 | 0.41043 (11) | 0.21569 (11) | 0.48692 (17) | 0.0310 (4) | |
| Na1 | 0.04274 (5) | 0.08063 (4) | 0.43441 (7) | 0.0385 (2) | |
| O1 | 0.10965 (9) | 0.08373 (8) | 0.27653 (13) | 0.0411 (3) | |
| O2 | 0.22662 (9) | 0.13103 (9) | 0.23128 (12) | 0.0416 (3) | |
| H2 | 0.2806 | 0.1544 | 0.2746 | 0.062* | |
| O4 | 0.38682 (9) | 0.20490 (9) | 0.35643 (12) | 0.0417 (3) | |
| N2 | 0.36555 (10) | 0.18188 (9) | 0.67516 (14) | 0.0321 (3) | |
| H2A | 0.4177 | 0.2046 | 0.7425 | 0.039* | |
| O5 | −0.06348 (10) | 0.07199 (8) | 0.54055 (14) | 0.0437 (3) | |
| H5A | −0.0517 | 0.1150 | 0.5978 | 0.052* | |
| H5B | −0.1209 | 0.0894 | 0.4662 | 0.052* | |
| N1 | 0.22111 (10) | 0.11704 (9) | 0.56488 (14) | 0.0329 (3) | |
| C2 | 0.34437 (11) | 0.17694 (10) | 0.53667 (16) | 0.0290 (4) | |
| C4 | 0.19168 (12) | 0.11485 (11) | 0.31776 (17) | 0.0313 (4) | |
| C1 | 0.25389 (11) | 0.13611 (10) | 0.46930 (16) | 0.0292 (4) | |
| C3 | 0.29110 (12) | 0.14524 (11) | 0.68890 (18) | 0.0338 (4) | |
| C6 | 0.29259 (14) | 0.13640 (14) | 0.82798 (19) | 0.0454 (5) | |
| H6A | 0.2276 | 0.1191 | 0.8121 | 0.054* | |
| H6B | 0.3074 | 0.1922 | 0.8748 | 0.054* | |
| C7 | 0.36813 (17) | 0.07062 (14) | 0.9247 (2) | 0.0525 (5) | |
| H7A | 0.3512 | 0.0141 | 0.8804 | 0.063* | |
| H7B | 0.4327 | 0.0861 | 0.9367 | 0.063* | |
| C8 | 0.3727 (2) | 0.06594 (17) | 1.0677 (2) | 0.0757 (8) | |
| H8A | 0.3924 | 0.1210 | 1.1138 | 0.113* | |
| H8B | 0.4198 | 0.0228 | 1.1242 | 0.113* | |
| H8C | 0.3089 | 0.0510 | 1.0564 | 0.113* | |
| O6 | 0.0000 | 0.20200 (12) | 0.7500 | 0.0512 (5) | |
| H6C | 0.0310 | 0.2400 | 0.7245 | 0.061* |
| O3 | 0.0294 (6) | 0.0443 (7) | 0.0345 (7) | −0.0048 (5) | 0.0108 (5) | 0.0028 (5) |
| C5 | 0.0256 (8) | 0.0338 (9) | 0.0317 (9) | 0.0040 (7) | 0.0121 (7) | 0.0032 (7) |
| Na1 | 0.0328 (4) | 0.0462 (4) | 0.0354 (4) | −0.0046 (3) | 0.0154 (3) | 0.0024 (3) |
| O1 | 0.0309 (7) | 0.0564 (8) | 0.0319 (7) | −0.0082 (6) | 0.0115 (5) | −0.0032 (5) |
| O2 | 0.0347 (7) | 0.0600 (8) | 0.0289 (6) | −0.0111 (6) | 0.0142 (5) | −0.0073 (6) |
| O4 | 0.0391 (7) | 0.0574 (8) | 0.0332 (7) | −0.0083 (6) | 0.0209 (6) | −0.0025 (5) |
| N2 | 0.0269 (7) | 0.0400 (8) | 0.0254 (7) | −0.0013 (6) | 0.0091 (5) | −0.0007 (6) |
| O5 | 0.0472 (8) | 0.0453 (8) | 0.0372 (7) | 0.0025 (6) | 0.0190 (6) | 0.0020 (5) |
| N1 | 0.0298 (7) | 0.0401 (8) | 0.0291 (7) | −0.0001 (6) | 0.0142 (6) | 0.0024 (6) |
| C2 | 0.0288 (8) | 0.0305 (8) | 0.0266 (8) | 0.0032 (7) | 0.0122 (7) | 0.0004 (6) |
| C4 | 0.0299 (9) | 0.0346 (9) | 0.0280 (9) | 0.0012 (7) | 0.0126 (7) | 0.0000 (7) |
| C1 | 0.0270 (8) | 0.0319 (9) | 0.0282 (9) | 0.0030 (6) | 0.0127 (7) | 0.0017 (6) |
| C3 | 0.0299 (9) | 0.0408 (10) | 0.0294 (9) | 0.0031 (7) | 0.0131 (7) | 0.0034 (7) |
| C6 | 0.0457 (11) | 0.0611 (12) | 0.0319 (10) | −0.0014 (9) | 0.0205 (8) | 0.0018 (9) |
| C7 | 0.0587 (13) | 0.0574 (13) | 0.0383 (11) | −0.0110 (10) | 0.0205 (9) | 0.0054 (9) |
| C8 | 0.104 (2) | 0.0765 (17) | 0.0368 (12) | −0.0225 (15) | 0.0254 (13) | 0.0041 (11) |
| O6 | 0.0693 (13) | 0.0439 (11) | 0.0553 (12) | 0.000 | 0.0417 (11) | 0.000 |
| O3—C5 | 1.237 (2) | O5—H5A | 0.8645 |
| C5—O4 | 1.280 (2) | O5—H5B | 0.9066 |
| C5—C2 | 1.482 (2) | N1—C3 | 1.327 (2) |
| Na1—O1 | 2.3658 (15) | N1—C1 | 1.374 (2) |
| Na1—O1i | 2.3644 (14) | C2—C1 | 1.381 (2) |
| Na1—O3ii | 2.5550 (15) | C4—C1 | 1.480 (2) |
| Na1—O5 | 2.4011 (15) | C3—C6 | 1.488 (2) |
| Na1—O5iii | 2.3818 (16) | C6—C7 | 1.524 (3) |
| Na1—N1 | 2.4848 (16) | C6—H6A | 0.9700 |
| Na1—Na1iii | 3.4217 (14) | C6—H6B | 0.9700 |
| Na1—Na1i | 3.5291 (16) | C7—C8 | 1.504 (3) |
| O1—C4 | 1.222 (2) | C7—H7A | 0.9700 |
| O2—C4 | 1.300 (2) | C7—H7B | 0.9700 |
| O2—H2 | 0.8200 | C8—H8A | 0.9600 |
| N2—C3 | 1.349 (2) | C8—H8B | 0.9600 |
| N2—C2 | 1.364 (2) | C8—H8C | 0.9600 |
| N2—H2A | 0.8600 | O6—H6C | 0.8790 |
| C5—O3—Na1ii | 113.64 (10) | Na1iii—O5—Na1 | 91.35 (5) |
| O3—C5—O4 | 124.46 (15) | Na1iii—O5—H5A | 135.4 |
| O3—C5—C2 | 118.49 (15) | Na1—O5—H5A | 109.5 |
| O4—C5—C2 | 117.05 (14) | Na1iii—O5—H5B | 114.6 |
| O1i—Na1—O1 | 83.45 (5) | Na1—O5—H5B | 99.5 |
| O1i—Na1—O5iii | 98.46 (5) | H5A—O5—H5B | 100.6 |
| O1—Na1—O5iii | 91.16 (5) | C3—N1—C1 | 105.47 (14) |
| O1i—Na1—O5 | 82.24 (5) | C3—N1—Na1 | 142.55 (12) |
| O1—Na1—O5 | 165.50 (5) | C1—N1—Na1 | 109.17 (10) |
| O5iii—Na1—O5 | 88.65 (5) | N2—C2—C1 | 104.80 (14) |
| O1i—Na1—N1 | 149.80 (6) | N2—C2—C5 | 121.35 (14) |
| O1—Na1—N1 | 69.97 (5) | C1—C2—C5 | 133.75 (15) |
| O5iii—Na1—N1 | 96.21 (5) | O1—C4—O2 | 121.69 (15) |
| O5—Na1—N1 | 124.46 (6) | O1—C4—C1 | 120.25 (15) |
| O1i—Na1—O3ii | 83.03 (5) | O2—C4—C1 | 118.06 (14) |
| O1—Na1—O3ii | 94.36 (5) | N1—C1—C2 | 110.18 (14) |
| O5iii—Na1—O3ii | 174.41 (5) | N1—C1—C4 | 119.81 (14) |
| O5—Na1—O3ii | 86.22 (5) | C2—C1—C4 | 129.97 (15) |
| N1—Na1—O3ii | 84.91 (5) | N1—C3—N2 | 110.88 (15) |
| O1i—Na1—Na1iii | 90.44 (4) | N1—C3—C6 | 126.43 (16) |
| O1—Na1—Na1iii | 133.90 (5) | N2—C3—C6 | 122.65 (15) |
| O5iii—Na1—Na1iii | 44.55 (4) | C3—C6—C7 | 112.82 (16) |
| O5—Na1—Na1iii | 44.10 (4) | C3—C6—H6A | 109.0 |
| N1—Na1—Na1iii | 118.18 (5) | C7—C6—H6A | 109.0 |
| O3ii—Na1—Na1iii | 130.28 (5) | C3—C6—H6B | 109.0 |
| O1i—Na1—Na1i | 41.76 (4) | C7—C6—H6B | 109.0 |
| O1—Na1—Na1i | 41.73 (3) | H6A—C6—H6B | 107.8 |
| O5iii—Na1—Na1i | 94.88 (4) | C8—C7—C6 | 112.2 (2) |
| O5—Na1—Na1i | 123.85 (5) | C8—C7—H7A | 109.2 |
| N1—Na1—Na1i | 110.83 (4) | C6—C7—H7A | 109.2 |
| O3ii—Na1—Na1i | 89.81 (3) | C8—C7—H7B | 109.2 |
| Na1iii—Na1—Na1i | 116.76 (3) | C6—C7—H7B | 109.2 |
| C4—O1—Na1i | 137.76 (11) | H7A—C7—H7B | 107.9 |
| C4—O1—Na1 | 118.44 (11) | C7—C8—H8A | 109.5 |
| Na1i—O1—Na1 | 96.50 (5) | C7—C8—H8B | 109.5 |
| C4—O2—H2 | 109.5 | H8A—C8—H8B | 109.5 |
| C3—N2—C2 | 108.66 (14) | C7—C8—H8C | 109.5 |
| C3—N2—H2A | 125.7 | H8A—C8—H8C | 109.5 |
| C2—N2—H2A | 125.7 | H8B—C8—H8C | 109.5 |
| Na1ii—O3—C5—O4 | 83.19 (17) | Na1iii—Na1—N1—C1 | 142.32 (10) |
| Na1ii—O3—C5—C2 | −96.58 (14) | Na1i—Na1—N1—C1 | 3.70 (11) |
| O1i—Na1—O1—C4 | 153.03 (11) | C3—N2—C2—C1 | 0.27 (17) |
| O5iii—Na1—O1—C4 | −108.59 (13) | C3—N2—C2—C5 | 177.03 (14) |
| O5—Na1—O1—C4 | 162.3 (2) | O3—C5—C2—N2 | −3.0 (2) |
| N1—Na1—O1—C4 | −12.40 (12) | O4—C5—C2—N2 | 177.24 (15) |
| O3ii—Na1—O1—C4 | 70.56 (13) | O3—C5—C2—C1 | 172.70 (17) |
| Na1iii—Na1—O1—C4 | −122.69 (12) | O4—C5—C2—C1 | −7.1 (3) |
| Na1i—Na1—O1—C4 | 155.37 (15) | Na1i—O1—C4—O2 | −27.1 (3) |
| O1i—Na1—O1—Na1i | −2.35 (7) | Na1—O1—C4—O2 | −169.10 (12) |
| O5iii—Na1—O1—Na1i | 96.04 (5) | Na1i—O1—C4—C1 | 152.23 (13) |
| O5—Na1—O1—Na1i | 7.0 (2) | Na1—O1—C4—C1 | 10.2 (2) |
| N1—Na1—O1—Na1i | −167.77 (6) | C3—N1—C1—C2 | −0.50 (19) |
| O3ii—Na1—O1—Na1i | −84.81 (5) | Na1—N1—C1—C2 | 165.02 (11) |
| Na1iii—Na1—O1—Na1i | 81.93 (7) | C3—N1—C1—C4 | −178.63 (15) |
| O1i—Na1—O5—Na1iii | 98.73 (5) | Na1—N1—C1—C4 | −13.10 (18) |
| O1—Na1—O5—Na1iii | 89.4 (2) | N2—C2—C1—N1 | 0.15 (18) |
| O5iii—Na1—O5—Na1iii | 0.0 | C5—C2—C1—N1 | −176.03 (16) |
| N1—Na1—O5—Na1iii | −96.60 (7) | N2—C2—C1—C4 | 178.02 (16) |
| O3ii—Na1—O5—Na1iii | −177.79 (5) | C5—C2—C1—C4 | 1.8 (3) |
| Na1i—Na1—O5—Na1iii | 94.97 (4) | O1—C4—C1—N1 | 3.0 (2) |
| O1i—Na1—N1—C3 | 139.23 (18) | O2—C4—C1—N1 | −177.59 (15) |
| O1—Na1—N1—C3 | 169.0 (2) | O1—C4—C1—C2 | −174.66 (17) |
| O5iii—Na1—N1—C3 | −102.0 (2) | O2—C4—C1—C2 | 4.7 (3) |
| O5—Na1—N1—C3 | −9.4 (2) | C1—N1—C3—N2 | 0.68 (19) |
| O3ii—Na1—N1—C3 | 72.5 (2) | Na1—N1—C3—N2 | −156.48 (14) |
| Na1iii—Na1—N1—C3 | −61.0 (2) | C1—N1—C3—C6 | −177.21 (17) |
| Na1i—Na1—N1—C3 | 160.36 (18) | Na1—N1—C3—C6 | 25.6 (3) |
| O1i—Na1—N1—C1 | −17.43 (17) | C2—N2—C3—N1 | −0.61 (19) |
| O1—Na1—N1—C1 | 12.38 (10) | C2—N2—C3—C6 | 177.38 (16) |
| O5iii—Na1—N1—C1 | 101.34 (11) | N1—C3—C6—C7 | 107.8 (2) |
| O5—Na1—N1—C1 | −166.03 (10) | N2—C3—C6—C7 | −69.8 (2) |
| O3ii—Na1—N1—C1 | −84.16 (11) | C3—C6—C7—C8 | 176.85 (18) |
| H··· | ||||
| N2—H2A···O3iv | 0.86 | 2.00 | 2.8384 (18) | 164 |
| O2—H2···O4 | 0.82 | 1.64 | 2.4603 (18) | 178 |
| O5—H5B···O2i | 0.91 | 2.07 | 2.9493 (18) | 164 |
| O5—H5A···O6 | 0.86 | 1.97 | 2.8234 (19) | 169 |
| O6—H6C···O4ii | 0.88 | 2.03 | 2.8835 (16) | 163 |
Selected bond lengths (Å)
| Na1—O1 | 2.3658 (15) |
| Na1—O1i | 2.3644 (14) |
| Na1—O3ii | 2.5550 (15) |
| Na1—O5 | 2.4011 (15) |
| Na1—O5iii | 2.3818 (16) |
| Na1—N1 | 2.4848 (16) |
Symmetry codes: (i) ; (ii) ; (iii) .
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2 | 0.86 | 2.00 | 2.8384 (18) | 164 |
| O2—H2⋯O4 | 0.82 | 1.64 | 2.4603 (18) | 178 |
| O5—H5 | 0.91 | 2.07 | 2.9493 (18) | 164 |
| O5—H5 | 0.86 | 1.97 | 2.8234 (19) | 169 |
| O6—H6 | 0.88 | 2.03 | 2.8835 (16) | 163 |
Symmetry codes: (i) ; (ii) ; (iv) .