Literature DB >> 21753940

Poly[[μ(2)-aqua-μ(3)-(4-carb-oxy-2-propyl-1H-imidazole-5-carboxyl-ato-κN,O:O:O)-sodium] hemihydrate].

Zhong-Jing Huang1, Jin-Niu Tang, Zhi-Rong Luo, Dai-Yin Wang, Huan Wei.   

Abstract

In the title compound, {[Na(C(8)H(9)N(2)O(4))(H(2)O)]·0.5H(2)O}(n), the Na(+) ion is coordinated by two bridging water mol-ecules, one N atom and three O atoms from three 4-carb-oxy-2-propyl-1H-imidazole-5-carboxyl-ate (H(2)pimdc) ligands. Adjacent Na(+) ions are linked alternately by two water O atoms and two carb-oxy O atoms into a chain along [001]. These chains are connected through the coordination of the carboxyl-ate O atoms to the Na(+) ions, forming a three-dimensional structure. An intra-molecular O-H⋯O hydrogen bond and inter-molecular N-H⋯O and O-H⋯O hydrogen bonds are present in the crystal structure.

Entities:  

Year:  2011        PMID: 21753940      PMCID: PMC3099890          DOI: 10.1107/S1600536811007732

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the properties and biological activity of imidazole-4,5-dicarb­oxy­lic acid and its derivatives, see: Baures (1999 ▶); Bogdanova et al. (1992 ▶); Borodkin et al. (1984 ▶); Reichardt et al. (1992 ▶); Su et al. (2001 ▶).

Experimental

Crystal data

[Na(C8H9N2O4)(H2O)]·0.5H2O M = 247.18 Monoclinic, a = 15.406 (4) Å b = 15.478 (4) Å c = 10.734 (3) Å β = 118.364 (3)° V = 2252.4 (9) Å3 Z = 8 Mo Kα radiation μ = 0.15 mm−1 T = 296 K 0.52 × 0.47 × 0.44 mm

Data collection

Bruker APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.528, T max = 0.562 5971 measured reflections 1986 independent reflections 1669 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.106 S = 1.10 1986 reflections 152 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811007732/hy2402sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811007732/hy2402Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Na(C8H9N2O4)(H2O)]·0.5H2OF(000) = 1032
Mr = 247.18Dx = 1.458 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2142 reflections
a = 15.406 (4) Åθ = 2.4–26.8°
b = 15.478 (4) ŵ = 0.15 mm1
c = 10.734 (3) ÅT = 296 K
β = 118.364 (3)°Block, colorless
V = 2252.4 (9) Å30.52 × 0.47 × 0.44 mm
Z = 8
Bruker APEX CCD diffractometer1986 independent reflections
Radiation source: fine-focus sealed tube1669 reflections with I > 2σ(I)
graphiteRint = 0.020
φ and ω scansθmax = 25.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −18→17
Tmin = 0.528, Tmax = 0.562k = −18→17
5971 measured reflectionsl = −11→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.106H-atom parameters constrained
S = 1.10w = 1/[σ2(Fo2) + (0.0609P)2 + 0.6897P] where P = (Fo2 + 2Fc2)/3
1986 reflections(Δ/σ)max < 0.001
152 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.21 e Å3
xyzUiso*/Ueq
O30.48386 (8)0.25613 (8)0.57288 (12)0.0379 (3)
C50.41043 (11)0.21569 (11)0.48692 (17)0.0310 (4)
Na10.04274 (5)0.08063 (4)0.43441 (7)0.0385 (2)
O10.10965 (9)0.08373 (8)0.27653 (13)0.0411 (3)
O20.22662 (9)0.13103 (9)0.23128 (12)0.0416 (3)
H20.28060.15440.27460.062*
O40.38682 (9)0.20490 (9)0.35643 (12)0.0417 (3)
N20.36555 (10)0.18188 (9)0.67516 (14)0.0321 (3)
H2A0.41770.20460.74250.039*
O5−0.06348 (10)0.07199 (8)0.54055 (14)0.0437 (3)
H5A−0.05170.11500.59780.052*
H5B−0.12090.08940.46620.052*
N10.22111 (10)0.11704 (9)0.56488 (14)0.0329 (3)
C20.34437 (11)0.17694 (10)0.53667 (16)0.0290 (4)
C40.19168 (12)0.11485 (11)0.31776 (17)0.0313 (4)
C10.25389 (11)0.13611 (10)0.46930 (16)0.0292 (4)
C30.29110 (12)0.14524 (11)0.68890 (18)0.0338 (4)
C60.29259 (14)0.13640 (14)0.82798 (19)0.0454 (5)
H6A0.22760.11910.81210.054*
H6B0.30740.19220.87480.054*
C70.36813 (17)0.07062 (14)0.9247 (2)0.0525 (5)
H7A0.35120.01410.88040.063*
H7B0.43270.08610.93670.063*
C80.3727 (2)0.06594 (17)1.0677 (2)0.0757 (8)
H8A0.39240.12101.11380.113*
H8B0.41980.02281.12420.113*
H8C0.30890.05101.05640.113*
O60.00000.20200 (12)0.75000.0512 (5)
H6C0.03100.24000.72450.061*
U11U22U33U12U13U23
O30.0294 (6)0.0443 (7)0.0345 (7)−0.0048 (5)0.0108 (5)0.0028 (5)
C50.0256 (8)0.0338 (9)0.0317 (9)0.0040 (7)0.0121 (7)0.0032 (7)
Na10.0328 (4)0.0462 (4)0.0354 (4)−0.0046 (3)0.0154 (3)0.0024 (3)
O10.0309 (7)0.0564 (8)0.0319 (7)−0.0082 (6)0.0115 (5)−0.0032 (5)
O20.0347 (7)0.0600 (8)0.0289 (6)−0.0111 (6)0.0142 (5)−0.0073 (6)
O40.0391 (7)0.0574 (8)0.0332 (7)−0.0083 (6)0.0209 (6)−0.0025 (5)
N20.0269 (7)0.0400 (8)0.0254 (7)−0.0013 (6)0.0091 (5)−0.0007 (6)
O50.0472 (8)0.0453 (8)0.0372 (7)0.0025 (6)0.0190 (6)0.0020 (5)
N10.0298 (7)0.0401 (8)0.0291 (7)−0.0001 (6)0.0142 (6)0.0024 (6)
C20.0288 (8)0.0305 (8)0.0266 (8)0.0032 (7)0.0122 (7)0.0004 (6)
C40.0299 (9)0.0346 (9)0.0280 (9)0.0012 (7)0.0126 (7)0.0000 (7)
C10.0270 (8)0.0319 (9)0.0282 (9)0.0030 (6)0.0127 (7)0.0017 (6)
C30.0299 (9)0.0408 (10)0.0294 (9)0.0031 (7)0.0131 (7)0.0034 (7)
C60.0457 (11)0.0611 (12)0.0319 (10)−0.0014 (9)0.0205 (8)0.0018 (9)
C70.0587 (13)0.0574 (13)0.0383 (11)−0.0110 (10)0.0205 (9)0.0054 (9)
C80.104 (2)0.0765 (17)0.0368 (12)−0.0225 (15)0.0254 (13)0.0041 (11)
O60.0693 (13)0.0439 (11)0.0553 (12)0.0000.0417 (11)0.000
O3—C51.237 (2)O5—H5A0.8645
C5—O41.280 (2)O5—H5B0.9066
C5—C21.482 (2)N1—C31.327 (2)
Na1—O12.3658 (15)N1—C11.374 (2)
Na1—O1i2.3644 (14)C2—C11.381 (2)
Na1—O3ii2.5550 (15)C4—C11.480 (2)
Na1—O52.4011 (15)C3—C61.488 (2)
Na1—O5iii2.3818 (16)C6—C71.524 (3)
Na1—N12.4848 (16)C6—H6A0.9700
Na1—Na1iii3.4217 (14)C6—H6B0.9700
Na1—Na1i3.5291 (16)C7—C81.504 (3)
O1—C41.222 (2)C7—H7A0.9700
O2—C41.300 (2)C7—H7B0.9700
O2—H20.8200C8—H8A0.9600
N2—C31.349 (2)C8—H8B0.9600
N2—C21.364 (2)C8—H8C0.9600
N2—H2A0.8600O6—H6C0.8790
C5—O3—Na1ii113.64 (10)Na1iii—O5—Na191.35 (5)
O3—C5—O4124.46 (15)Na1iii—O5—H5A135.4
O3—C5—C2118.49 (15)Na1—O5—H5A109.5
O4—C5—C2117.05 (14)Na1iii—O5—H5B114.6
O1i—Na1—O183.45 (5)Na1—O5—H5B99.5
O1i—Na1—O5iii98.46 (5)H5A—O5—H5B100.6
O1—Na1—O5iii91.16 (5)C3—N1—C1105.47 (14)
O1i—Na1—O582.24 (5)C3—N1—Na1142.55 (12)
O1—Na1—O5165.50 (5)C1—N1—Na1109.17 (10)
O5iii—Na1—O588.65 (5)N2—C2—C1104.80 (14)
O1i—Na1—N1149.80 (6)N2—C2—C5121.35 (14)
O1—Na1—N169.97 (5)C1—C2—C5133.75 (15)
O5iii—Na1—N196.21 (5)O1—C4—O2121.69 (15)
O5—Na1—N1124.46 (6)O1—C4—C1120.25 (15)
O1i—Na1—O3ii83.03 (5)O2—C4—C1118.06 (14)
O1—Na1—O3ii94.36 (5)N1—C1—C2110.18 (14)
O5iii—Na1—O3ii174.41 (5)N1—C1—C4119.81 (14)
O5—Na1—O3ii86.22 (5)C2—C1—C4129.97 (15)
N1—Na1—O3ii84.91 (5)N1—C3—N2110.88 (15)
O1i—Na1—Na1iii90.44 (4)N1—C3—C6126.43 (16)
O1—Na1—Na1iii133.90 (5)N2—C3—C6122.65 (15)
O5iii—Na1—Na1iii44.55 (4)C3—C6—C7112.82 (16)
O5—Na1—Na1iii44.10 (4)C3—C6—H6A109.0
N1—Na1—Na1iii118.18 (5)C7—C6—H6A109.0
O3ii—Na1—Na1iii130.28 (5)C3—C6—H6B109.0
O1i—Na1—Na1i41.76 (4)C7—C6—H6B109.0
O1—Na1—Na1i41.73 (3)H6A—C6—H6B107.8
O5iii—Na1—Na1i94.88 (4)C8—C7—C6112.2 (2)
O5—Na1—Na1i123.85 (5)C8—C7—H7A109.2
N1—Na1—Na1i110.83 (4)C6—C7—H7A109.2
O3ii—Na1—Na1i89.81 (3)C8—C7—H7B109.2
Na1iii—Na1—Na1i116.76 (3)C6—C7—H7B109.2
C4—O1—Na1i137.76 (11)H7A—C7—H7B107.9
C4—O1—Na1118.44 (11)C7—C8—H8A109.5
Na1i—O1—Na196.50 (5)C7—C8—H8B109.5
C4—O2—H2109.5H8A—C8—H8B109.5
C3—N2—C2108.66 (14)C7—C8—H8C109.5
C3—N2—H2A125.7H8A—C8—H8C109.5
C2—N2—H2A125.7H8B—C8—H8C109.5
Na1ii—O3—C5—O483.19 (17)Na1iii—Na1—N1—C1142.32 (10)
Na1ii—O3—C5—C2−96.58 (14)Na1i—Na1—N1—C13.70 (11)
O1i—Na1—O1—C4153.03 (11)C3—N2—C2—C10.27 (17)
O5iii—Na1—O1—C4−108.59 (13)C3—N2—C2—C5177.03 (14)
O5—Na1—O1—C4162.3 (2)O3—C5—C2—N2−3.0 (2)
N1—Na1—O1—C4−12.40 (12)O4—C5—C2—N2177.24 (15)
O3ii—Na1—O1—C470.56 (13)O3—C5—C2—C1172.70 (17)
Na1iii—Na1—O1—C4−122.69 (12)O4—C5—C2—C1−7.1 (3)
Na1i—Na1—O1—C4155.37 (15)Na1i—O1—C4—O2−27.1 (3)
O1i—Na1—O1—Na1i−2.35 (7)Na1—O1—C4—O2−169.10 (12)
O5iii—Na1—O1—Na1i96.04 (5)Na1i—O1—C4—C1152.23 (13)
O5—Na1—O1—Na1i7.0 (2)Na1—O1—C4—C110.2 (2)
N1—Na1—O1—Na1i−167.77 (6)C3—N1—C1—C2−0.50 (19)
O3ii—Na1—O1—Na1i−84.81 (5)Na1—N1—C1—C2165.02 (11)
Na1iii—Na1—O1—Na1i81.93 (7)C3—N1—C1—C4−178.63 (15)
O1i—Na1—O5—Na1iii98.73 (5)Na1—N1—C1—C4−13.10 (18)
O1—Na1—O5—Na1iii89.4 (2)N2—C2—C1—N10.15 (18)
O5iii—Na1—O5—Na1iii0.0C5—C2—C1—N1−176.03 (16)
N1—Na1—O5—Na1iii−96.60 (7)N2—C2—C1—C4178.02 (16)
O3ii—Na1—O5—Na1iii−177.79 (5)C5—C2—C1—C41.8 (3)
Na1i—Na1—O5—Na1iii94.97 (4)O1—C4—C1—N13.0 (2)
O1i—Na1—N1—C3139.23 (18)O2—C4—C1—N1−177.59 (15)
O1—Na1—N1—C3169.0 (2)O1—C4—C1—C2−174.66 (17)
O5iii—Na1—N1—C3−102.0 (2)O2—C4—C1—C24.7 (3)
O5—Na1—N1—C3−9.4 (2)C1—N1—C3—N20.68 (19)
O3ii—Na1—N1—C372.5 (2)Na1—N1—C3—N2−156.48 (14)
Na1iii—Na1—N1—C3−61.0 (2)C1—N1—C3—C6−177.21 (17)
Na1i—Na1—N1—C3160.36 (18)Na1—N1—C3—C625.6 (3)
O1i—Na1—N1—C1−17.43 (17)C2—N2—C3—N1−0.61 (19)
O1—Na1—N1—C112.38 (10)C2—N2—C3—C6177.38 (16)
O5iii—Na1—N1—C1101.34 (11)N1—C3—C6—C7107.8 (2)
O5—Na1—N1—C1−166.03 (10)N2—C3—C6—C7−69.8 (2)
O3ii—Na1—N1—C1−84.16 (11)C3—C6—C7—C8176.85 (18)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O3iv0.862.002.8384 (18)164
O2—H2···O40.821.642.4603 (18)178
O5—H5B···O2i0.912.072.9493 (18)164
O5—H5A···O60.861.972.8234 (19)169
O6—H6C···O4ii0.882.032.8835 (16)163
Table 1

Selected bond lengths (Å)

Na1—O12.3658 (15)
Na1—O1i2.3644 (14)
Na1—O3ii2.5550 (15)
Na1—O52.4011 (15)
Na1—O5iii2.3818 (16)
Na1—N12.4848 (16)

Symmetry codes: (i) ; (ii) ; (iii) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O3iv0.862.002.8384 (18)164
O2—H2⋯O40.821.642.4603 (18)178
O5—H5B⋯O2i0.912.072.9493 (18)164
O5—H5A⋯O60.861.972.8234 (19)169
O6—H6C⋯O4ii0.882.032.8835 (16)163

Symmetry codes: (i) ; (ii) ; (iv) .

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1.  Poly[1H-imidazol-3-ium [di-μ-nitrato-sodium]].

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