| Literature DB >> 21749709 |
Bangshun He1, Yuqin Pan, Ying Zhang, Qian Bao, Liping Chen, Zhenlin Nie, Ling Gu, Yeqiong Xu, Shukui Wang.
Abstract
BACKGROUND: Decreased expression of adiponectin (ADIPOQ) is associated with an increased risk for developing colorectal cancer (CRC) in humans. This study was designed to determine whether polymorphisms present in the ADIPOQ and its type 1 receptor (ADIPOR1) could affect the risk of CRC.Entities:
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Year: 2011 PMID: 21749709 PMCID: PMC3166913 DOI: 10.1186/1471-2350-12-94
Source DB: PubMed Journal: BMC Med Genet ISSN: 1471-2350 Impact factor: 2.103
Primers and PCR conditions for genotype detection of ADIPOQ and ADIPOR1
| SNP | Gene | Position | Annual temperature | Primer sequence | Restriction enzyme | PCR-RFLP products(bp) | Genotype |
|---|---|---|---|---|---|---|---|
| (5'-3') | |||||||
| rs266729 | 5′ flanking -11365 C→G | 63°C | GATGTCTTGTTGAAGTTGGTGCTG | 176 | CC | ||
| rs822395 | Intron 1 -4034 A→C | 50°C | TGATCGCACCTATTAGTGGAGgAAT* | 208 | AA | ||
| rs822396 | Intron 1 -3964 A→G | 58°C | ATCAGAGTCCGTTCTTGGT | 458 | GG | ||
| rs2241766 | Exon 2 +45 T→G | 51°C | GATCAAGGTGGGCTGCAATA | 246 | TT | ||
| rs1501299 | Intron 2 +276 G→T | 50°C | TCTAGGCCTTAGTTAATAATGcA* | 250 | AA | ||
| rs12733285 | Intron 1 -1742 C→T | 66°C | GTCATGCTATGCTCAACCCACAtGC* | 209 | CC | ||
| rs1342387 | Intron 4 +5843 G→A | 60°C | CACCTGGTAGTGGGATTGG | 474 | GG |
* Primers in lower case letters denote the mismatched position that is required for subsequent restriction digestion for the differentiation of the polymorphisms.
Demographic and clinical characteristics of CRC patients and the controls
| Variables | Patients, n (%) | Controls, n (%) | P-value |
|---|---|---|---|
| Total cases | 420 | 555 | |
| Gender | |||
| Male | 280 (66.67) | 339 (61.08) | 0.084 |
| Female | 140(33.33) | 216 (38.92) | |
| Age | |||
| Mean ± SD | 62.88 ± 12.32 | 61.71 ± 10.65 | 0.113 |
| ≤ 60 | 186(44.29) | 271 (48.83) | 0.082 |
| >60 | 234(55.71) | 284 (51.17) | |
| Smoking status (Pack-year) | |||
| Non-smoker | 316 (73.24) | 406 (73.15) | 0.508 |
| Smoker | 104(24.76) | 149(26.85) | |
| Alcohol consumption (year) | |||
| Never | 274(65.24) | 379 (68.29) | 0.514 |
| ≤ 15 | 119 (28.33) | 139(25.05) | |
| > 15 | 27 (6.43) | 37 (6.67) | |
| Tumor site | |||
| Colon | 191(45.48) | -- | -- |
| Rectal | 229(54.52) | -- |
The genotype distribution of ADIPOQ and ADIPOR1 in CRC patients and controls
| Genotypes | Patients, n (%) | Controls, n (%) | OR (95% CI)a | OR (95% CI)b | |
|---|---|---|---|---|---|
| rs266729 | |||||
| CC | 173(41.79) | 243 (43.78) | Reference | Reference | 0.705 |
| GC | 205 (48.81) | 261(47.03) | 1.10(0.84,1.44) | 1.12(0.85,1.46) | |
| GG | 42(10.00) | 51(9.19) | 1.16(0.74,1.82) | 1.18(0.75,1.86) | |
| GC/GG | 247(58.81) | 312(56.22) | 1.12(0.86,1.44) | 1.13(0.87,1.46) | |
| rs822395 | |||||
| AA | 343(81.67) | 440(79.28) | Reference | Reference | 0.38 |
| AC | 70(16.67) | 109(19.64) | 0.82(0.59,1.15) | 0.81(0.58,1.12) | |
| CC | 7(1.67) | 6(1.08) | 1.50(0.50,4.49) | 1.47(0.49,4.46) | |
| AC/CC | 77(18.33) | 115(20.72) | 0.86(0.62,1.18) | 0.84(0.61,1.16) | |
| rs822396 | |||||
| AA | 344(81.90) | 450(81.08) | Reference | Reference | 0.82 |
| AG | 73(17.38) | 99(17.84) | 0.97(0.69,1.35) | 0.99(0.70,1.38) | |
| GG | 3(0.71) | 6(1.08) | 0.65(0.16,2.63) | 0.63(0.16,2.54) | |
| AG/GG | 76(18.10) | 105(18.92) | 0.94(0.68,1.31) | 0.96(0.69,1.34) | |
| rs2241766 | |||||
| TT | 190(45.24) | 278(50.09) | Reference | Reference | 0.265 |
| TG | 193(45.95) | 238(42.88) | 1.19(0.91,1.55) | 1.18(0.91,1.54) | |
| GG | 37(8.81) | 39(7.03) | 1.39(0.85,2.26) | 1.42(0.86,2.32) | |
| TG/GG | 230(54.76) | 277(49.91) | 1.22(0.94,1.57) | 1.21(0.94,1.57) | |
| rs1501299 | |||||
| CC | 220(52.38) | 265(47.75) | Reference | Reference | 0.276 |
| AC | 160(38.10) | 224(40.36) | 0.86(0.66,1.13) | 0.87(0.66,1.15) | |
| AA | 40(9.52) | 66(11.89) | 0.73(0.47,1.12) | 0.95(0.67,1.36) | |
| AC/AA | 200(47.62) | 290(52.25) | 0.83(0.65,1.07) | 0.84(0.65,1.09) | |
| rs12733285 | |||||
| CC | 386(91.90) | 477(85.95) | Reference | Reference | 0.004 |
| CT | 34(8.10) | 78(14.05) | 0.54(0.35,0.82) | 0.53(0.35,0.81) | |
| TT | 0(0.00) | 0(0.00) | -- | -- | |
| CT/TT | 34(8.10) | 78(14.05) | 0.54(0.35,0.82) | 0.53(0.35,0.81) | |
| rs1342387 | |||||
| GG | 213(50.71) | 210(37.84) | Reference | Reference | 0 |
| AG | 157(37.38) | 263(47.39) | 0.59(0.44,0.78) | 0.59(0.45,0.78) | |
| AA | 50(11.90) | 82(14.77) | 0.60(0.40,0.90) | 0.59(0.39,0.89) | |
| AG/AA | 207(49.29) | 345(62.16) | 0.59(0.46,0.77) | 0.59(0.46,0.77) |
aCrude odds ratio
bAge and gender adjusted odds ratio
cχ2 test for all genotypes between the two groups
Genotype distribution in relation to sub sites in colorectal cancer
| Genotypes | controls | Colon cancer | Rectal cancer | ||
|---|---|---|---|---|---|
| n (%) | n (%) | OR(95% CI)a | n(%) | OR (95% CI)a | |
| rs266729 | |||||
| CC | 243(43.78) | 68(35.60) | Reference | 105(45.85) | Reference |
| GC | 261(47.03) | 107(56.02) | 1.50(1.05,2.14) | 98(42.79) | 0.88(0.63,1.22) |
| GG | 51(9.19) | 16(8.38) | 1.19(0.64,2.25) | 26(11.35) | 1.20(0.71,2.04) |
| GC/GG | 312(56.22) | 123(64.40) | 1.45(1.03, 2.05) | 124(54.15) | 0.94(0.69,1.28) |
| rs822395 | |||||
| AA | 440(79.28) | 155(81.15) | Reference | 188(82.10) | Reference |
| AC | 109(19.64) | 32(16.75) | 0.82(0.53,1.27) | 38(16.59) | 0.80(0.53,1.20) |
| CC | 6(1.08) | 4(2.09) | 1.63(0.45,5.97) | 3(1.31) | 1.25(0.31,5.06) |
| AC/CC | 115(20.72) | 36(18.85) | 0.86(0.56,1.31) | 41(17.90) | 0.82(0.55,1.22) |
| rs822396 | |||||
| AA | 450(81.08) | 161(84.29) | Reference | 183(79.91) | Reference |
| AG | 99(17.84) | 28(14.66) | 0.830(0.52,1.31) | 45(19.65) | 1.11(0.75,1.65) |
| GG | 6(1.08) | 2(1.05) | 0.93(0.18,4.70) | 1(0.44) | 0.38(0.05,3.17) |
| AG/GG | 105(18.92) | 30(15.71) | 0.83(0.53,1.30) | 46(20.09) | 1.07(0.72,1.58) |
| rs2241766 | |||||
| TT | 278(50.09) | 91(47.64) | Reference | 99(42.23) | Reference |
| TG | 238(42.88) | 87(45.55) | 1.10(0.78,1.56) | 106(46.29) | 1.25(0.90,1.72) |
| GG | 39(7.03) | 13(6.81) | 1.07(0.54,2.11) | 24(10.48) | 1.71(0.97,3.01) |
| TG/GG | 277(49.91) | 100(52.36) | 1.10(0.79,1.53) | 130(56.77) | 1.31(0.96.1.79) |
| rs1501299 | |||||
| CC | 265(47.75) | 97(50.79) | Reference | 123(53.71) | Reference |
| AC | 224(40.36) | 72(37.70) | 0.86(0.60,1.24) | 88(38.43) | 0.88(0.63,1.22) |
| AA | 66(11.89) | 22(11.52) | 0.93(0.54,1.60) | 18(7.86) | 0.59(0.34,1.04) |
| AC/AA | 290(52.25) | 94(49.21) | 0.89(0.64,1.24) | 106(46.29) | 0.81(0.59,1.11) |
| rs12733285 | |||||
| CC | 477(85.95) | 175(91.62) | Reference | 211(92.14) | Reference |
| CT | 78(14.05) | 16(8.38) | 0.51(0.29,0.91) | 18(7.86) | 0.51(0.30,0.88) |
| TT | 0(0.00) | 0(0.00) | -- | 0(0.00) | -- |
| CT/TT | 78(14.05) | 16(8.38) | 0.51(0.29,0.91) | 18(7.86) | 0.51(0.30,0.88) |
| rs1342387 | |||||
| GG | 210(37.84) | 99(51.83) | Reference | 114(49.78) | Reference |
| AG | 263(47.39) | 69(36.13) | 0.57(0.40,0.81) | 88(38.43) | 0.62(0.45,0.87) |
| AA | 82(14.77) | 23(12.04) | 0.54(0.32,0.93) | 27(11.79) | 0.66(0.40,1.09) |
| AG/AA | 345(62.16) | 92(48.17) | 0.57(0.41,0.79) | 115(50.22) | 0.62(0.46,0.85) |
aAge and gender adjusted odds ratio