Literature DB >> 21748470

Biology and applications of small nucleolar RNAs.

Tomaž Bratkovič1, Boris Rogelj.   

Abstract

Small nucleolar RNAs (snoRNAs) constitute a group of non-coding RNAs principally involved in posttranscriptional modification of ubiquitously expressed ribosomal and small nuclear RNAs. However, a number of tissue-specific snoRNAs have recently been identified that apparently do not target conventional substrates and are presumed to guide processing of primary transcripts of protein-coding genes, potentially expanding the diapason of regulatory RNAs that control translation of mRNA to proteins. Here, we review biogenesis of snoRNAs and redefine their function in light of recent exciting discoveries. We also discuss the potential of recombinant snoRNAs to be used in modulation of gene expression.

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Year:  2011        PMID: 21748470     DOI: 10.1007/s00018-011-0762-y

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  74 in total

1.  PLEXY: efficient target prediction for box C/D snoRNAs.

Authors:  Stephanie Kehr; Sebastian Bartschat; Peter F Stadler; Hakim Tafer
Journal:  Bioinformatics       Date:  2010-11-13       Impact factor: 6.937

2.  The U3 small nucleolar ribonucleoprotein functions in the first step of preribosomal RNA processing.

Authors:  S Kass; K Tyc; J A Steitz; B Sollner-Webb
Journal:  Cell       Date:  1990-03-23       Impact factor: 41.582

3.  U14 base-pairs with 18S rRNA: a novel snoRNA interaction required for rRNA processing.

Authors:  W Q Liang; M J Fournier
Journal:  Genes Dev       Date:  1995-10-01       Impact factor: 11.361

4.  RNAsnoop: efficient target prediction for H/ACA snoRNAs.

Authors:  Hakim Tafer; Stephanie Kehr; Jana Hertel; Ivo L Hofacker; Peter F Stadler
Journal:  Bioinformatics       Date:  2009-12-16       Impact factor: 6.937

5.  A common sequence motif determines the Cajal body-specific localization of box H/ACA scaRNAs.

Authors:  Patricia Richard; Xavier Darzacq; Edouard Bertrand; Beáta E Jády; Céline Verheggen; Tamás Kiss
Journal:  EMBO J       Date:  2003-08-15       Impact factor: 11.598

6.  snoTARGET shows that human orphan snoRNA targets locate close to alternative splice junctions.

Authors:  Peter S Bazeley; Valery Shepelev; Zohreh Talebizadeh; Merlin G Butler; Larisa Fedorova; Vadim Filatov; Alexei Fedorov
Journal:  Gene       Date:  2007-11-21       Impact factor: 3.688

7.  Identification of human miRNA precursors that resemble box C/D snoRNAs.

Authors:  Motoharu Ono; Michelle S Scott; Kayo Yamada; Fabio Avolio; Geoffrey J Barton; Angus I Lamond
Journal:  Nucleic Acids Res       Date:  2011-01-18       Impact factor: 16.971

8.  snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome.

Authors:  Jian-Hua Yang; Xiao-Chen Zhang; Zhan-Peng Huang; Hui Zhou; Mian-Bo Huang; Shu Zhang; Yue-Qin Chen; Liang-Hu Qu
Journal:  Nucleic Acids Res       Date:  2006-09-20       Impact factor: 16.971

9.  Stepwise RNP assembly at the site of H/ACA RNA transcription in human cells.

Authors:  Xavier Darzacq; Nupur Kittur; Sujayita Roy; Yaron Shav-Tal; Robert H Singer; U Thomas Meier
Journal:  J Cell Biol       Date:  2006-04-17       Impact factor: 10.539

10.  Depletion of U3 small nucleolar RNA inhibits cleavage in the 5' external transcribed spacer of yeast pre-ribosomal RNA and impairs formation of 18S ribosomal RNA.

Authors:  J M Hughes; M Ares
Journal:  EMBO J       Date:  1991-12       Impact factor: 11.598

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  24 in total

1.  "Snorkeling" for missing players in cancer.

Authors:  Riccardo Taulli; Pier Paolo Pandolfi
Journal:  J Clin Invest       Date:  2012-07-02       Impact factor: 14.808

2.  Differences in cumulus cells gene expression between modified natural and stimulated in vitro fertilization cycles.

Authors:  Tanja Burnik Papler; Eda Vrtačnik Bokal; Klementina Fon Tacer; Peter Juvan; Irma Virant Klun; Rok Devjak
Journal:  J Assist Reprod Genet       Date:  2013-11-13       Impact factor: 3.412

Review 3.  Dual RNA-seq of pathogen and host.

Authors:  Alexander J Westermann; Stanislaw A Gorski; Jörg Vogel
Journal:  Nat Rev Microbiol       Date:  2012-09       Impact factor: 60.633

Review 4.  Single molecule fluorescence approaches shed light on intracellular RNAs.

Authors:  Sethuramasundaram Pitchiaya; Laurie A Heinicke; Thomas C Custer; Nils G Walter
Journal:  Chem Rev       Date:  2014-01-08       Impact factor: 60.622

5.  An updated human snoRNAome.

Authors:  Hadi Jorjani; Stephanie Kehr; Dominik J Jedlinski; Rafal Gumienny; Jana Hertel; Peter F Stadler; Mihaela Zavolan; Andreas R Gruber
Journal:  Nucleic Acids Res       Date:  2016-05-12       Impact factor: 16.971

6.  Coding and noncoding expression patterns associated with rare obesity-related disorders: Prader-Willi and Alström syndromes.

Authors:  Merlin G Butler; Kun Wang; Jan D Marshall; Jürgen K Naggert; Jasmine A Rethmeyer; Sumedha S Gunewardena; Ann M Manzardo
Journal:  Adv Genomics Genet       Date:  2015

7.  Targeting SNORA38B attenuates tumorigenesis and sensitizes immune checkpoint blockade in non-small cell lung cancer by remodeling the tumor microenvironment via regulation of GAB2/AKT/mTOR signaling pathway.

Authors:  Yue Zhuo; Shujun Li; Wei Hu; Yu Zhang; Yufan Shi; Faxue Zhang; Jian Zhang; Juan Wang; Meijuan Liao; Jiahao Chen; Huiling Qian; Dejia Li; Chengcao Sun
Journal:  J Immunother Cancer       Date:  2022-05       Impact factor: 12.469

8.  Analysis of rRNA processing and translation in mammalian cells using a synthetic 18S rRNA expression system.

Authors:  Luke G Burman; Vincent P Mauro
Journal:  Nucleic Acids Res       Date:  2012-06-20       Impact factor: 16.971

9.  CpG island hypermethylation-associated silencing of small nucleolar RNAs in human cancer.

Authors:  Humberto J Ferreira; Holger Heyn; Catia Moutinho; Manel Esteller
Journal:  RNA Biol       Date:  2012-05-23       Impact factor: 4.652

10.  Expression pattern of small nucleolar RNA host genes and long non-coding RNA in X-rays-treated lymphoblastoid cells.

Authors:  M Ahmad Chaudhry
Journal:  Int J Mol Sci       Date:  2013-04-25       Impact factor: 5.923

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