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Literature DB >> 21742887

Genome sequence of Idiomarina sp. strain A28L, isolated from Pangong Lake, India.

Hemant Kumar Gupta¹, Ajit Singh, Rakesh Sharma.

Abstract

Idiomarina sp. strain A28L was isolated from the alkaline brackish water of a high-altitude lake, Pangong Lake. Here, we present the draft genome of Idiomarina sp. strain A28L, which contains 2,591,567 bp with a G+C content of 45.5 mol% and contains 2,299 protein-coding genes and 56 structural RNAs.

Entities: Species

Mesh：

Year: 2011 PMID： 21742887 PMCID： PMC3187211 DOI： 10.1128/JB.05648-11

Source DB: PubMed Journal: J Bacteriol ISSN： 0021-9193 Impact factor: 3.490

12 in total

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Authors: E M Zdobnov; R Apweiler
Journal: Bioinformatics Date: 2001-09 Impact factor: 6.937

2. IMG ER: a system for microbial genome annotation expert review and curation.

Authors: Victor M Markowitz; Konstantinos Mavromatis; Natalia N Ivanova; I-Min A Chen; Ken Chu; Nikos C Kyrpides
Journal: Bioinformatics Date: 2009-06-27 Impact factor: 6.937

3. Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy.

Authors: Shaobin Hou; Jimmy H Saw; Kit Shan Lee; Tracey A Freitas; Claude Belisle; Yutaka Kawarabayasi; Stuart P Donachie; Alla Pikina; Michael Y Galperin; Eugene V Koonin; Kira S Makarova; Marina V Omelchenko; Alexander Sorokin; Yuri I Wolf; Qing X Li; Young Soo Keum; Sonia Campbell; Judith Denery; Shin-Ichi Aizawa; Satoshi Shibata; Alexander Malahoff; Maqsudul Alam
Journal: Proc Natl Acad Sci U S A Date: 2004-12-13 Impact factor: 11.205

4. Idiomarina maris sp. nov., a marine bacterium isolated from sediment.

Authors: Yan-Jiao Zhang; Xi-Ying Zhang; Hui-Lin Zhao; Ming-Yang Zhou; Hui-Juan Li; Zhao-Ming Gao; Xiu-Lan Chen; Hong-Yue Dang; Yu-Zhong Zhang
Journal: Int J Syst Evol Microbiol Date: 2011-03-25 Impact factor: 2.747

5. Prodigal: prokaryotic gene recognition and translation initiation site identification.

Authors: Doug Hyatt; Gwo-Liang Chen; Philip F Locascio; Miriam L Land; Frank W Larimer; Loren J Hauser
Journal: BMC Bioinformatics Date: 2010-03-08 Impact factor: 3.169

6. Pseudidiomarina marina sp. nov. and Pseudidiomarina tainanensis sp. nov. and reclassification of Idiomarina homiensis and Idiomarina salinarum as Pseudidiomarina homiensis comb. nov. and Pseudidiomarina salinarum comb. nov., respectively.

Authors: Wen Dar Jean; Tsung-Yen Leu; Chung-Yi Lee; Ta-Jen Chu; Silk Yu Lin; Wung Yang Shieh
Journal: Int J Syst Evol Microbiol Date: 2009-01 Impact factor: 2.747

7. The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes.

Authors: Konstantinos Mavromatis; Natalia N Ivanova; I-Min A Chen; Ernest Szeto; Victor M Markowitz; Nikos C Kyrpides
Journal: Stand Genomic Sci Date: 2009-07-20

8. KEGG for representation and analysis of molecular networks involving diseases and drugs.

Authors: Minoru Kanehisa; Susumu Goto; Miho Furumichi; Mao Tanabe; Mika Hirakawa
Journal: Nucleic Acids Res Date: 2009-10-30 Impact factor: 16.971

9. The RAST Server: rapid annotations using subsystems technology.

Authors: Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
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Authors: Robert D Finn; John Tate; Jaina Mistry; Penny C Coggill; Stephen John Sammut; Hans-Rudolf Hotz; Goran Ceric; Kristoffer Forslund; Sean R Eddy; Erik L L Sonnhammer; Alex Bateman
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5 in total

Genome sequence of Idiomarina sp. strain A28L, isolated from Pangong Lake, India.

1. InterProScan--an integration platform for the signature-recognition methods in InterPro.

2. IMG ER: a system for microbial genome annotation expert review and curation.

3. Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy.

4. Idiomarina maris sp. nov., a marine bacterium isolated from sediment.

5. Prodigal: prokaryotic gene recognition and translation initiation site identification.

6. Pseudidiomarina marina sp. nov. and Pseudidiomarina tainanensis sp. nov. and reclassification of Idiomarina homiensis and Idiomarina salinarum as Pseudidiomarina homiensis comb. nov. and Pseudidiomarina salinarum comb. nov., respectively.

7. The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes.

8. KEGG for representation and analysis of molecular networks involving diseases and drugs.

9. The RAST Server: rapid annotations using subsystems technology.

10. The Pfam protein families database.

Review 1. Carl woese: from biophysics to evolutionary microbiology.

2. Genome sequence of Idiomarina xiamenensis type strain 10-D-4.

3. Genome Sequence of the Deep-Sea Bacterium Idiomarina abyssalis KMM 227T.

4. Trophic Specialization Results in Genomic Reduction in Free-Living Marine Idiomarina Bacteria.

5. Occurrence of cyclic di-GMP-modulating output domains in cyanobacteria: an illuminating perspective.