Literature DB >> 21725020

Genome sequence of Methyloversatilis universalis FAM5T, a methylotrophic representative of the order Rhodocyclales.

Weerayuth Kittichotirat1, Nathan M Good, Rob Hall, Françoise Bringel, Aurélie Lajus, Claudine Médigue, Nicole E Smalley, David Beck, Roger Bumgarner, Stéphane Vuilleumier, Marina G Kalyuzhnaya.   

Abstract

Rhodocyclales are representative of versatile bacteria that are able to utilize a wide variety of organic compounds for growth, but only a few strains have been isolated in pure culture thus far. Here we present the genome sequence of Methyloversatilis universalis FAM5(T), the first cultivable methylotrophic member of the order.

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Year:  2011        PMID： 21725020      PMCID： PMC3165519          DOI： 10.1128/JB.05331-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  14 in total

1.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

2.  Methylibium petroleiphilum gen. nov., sp. nov., a novel methyl tert-butyl ether-degrading methylotroph of the Betaproteobacteria.

Authors:  Cindy H Nakatsu; Krassimira Hristova; Satoshi Hanada; Xian-Ying Meng; Jessica R Hanson; Kate M Scow; Yoichi Kamagata
Journal:  Int J Syst Evol Microbiol       Date:  2006-05       Impact factor: 2.747

3.  Genomes of three methylotrophs from a single niche reveal the genetic and metabolic divergence of the methylophilaceae.

Authors:  Alla Lapidus; Alicia Clum; Kurt Labutti; Marina G Kaluzhnaya; Sujung Lim; David A C Beck; Tijana Glavina Del Rio; Matt Nolan; Konstantinos Mavromatis; Marcel Huntemann; Susan Lucas; Mary E Lidstrom; Natalia Ivanova; Ludmila Chistoserdova
Journal:  J Bacteriol       Date:  2011-05-27       Impact factor: 3.490

4.  Distribution of tetrahydromethanopterin-dependent enzymes in methylotrophic bacteria and phylogeny of methenyl tetrahydromethanopterin cyclohydrolases.

Authors:  J A Vorholt; L Chistoserdova; S M Stolyar; R K Thauer; M E Lidstrom
Journal:  J Bacteriol       Date:  1999-09       Impact factor: 3.490

5.  Whole-genome analysis of the methyl tert-butyl ether-degrading beta-proteobacterium Methylibium petroleiphilum PM1.

Authors:  Staci R Kane; Anu Y Chakicherla; Patrick S G Chain; Radomir Schmidt; Maria W Shin; Tina C Legler; Kate M Scow; Frank W Larimer; Susan M Lucas; Paul M Richardson; Krassimira R Hristova
Journal:  J Bacteriol       Date:  2006-12-08       Impact factor: 3.490

6.  Methyloversatilis universalis gen. nov., sp. nov., a novel taxon within the Betaproteobacteria represented by three methylotrophic isolates.

Authors:  Marina G Kalyuzhnaya; Paolo De Marco; Sarah Bowerman; Catarina C Pacheco; Jimmie C Lara; Mary E Lidstrom; Ludmila Chistoserdova
Journal:  Int J Syst Evol Microbiol       Date:  2006-11       Impact factor: 2.747

7.  The tungsten-containing formate dehydrogenase from Methylobacterium extorquens AM1: purification and properties.

Authors:  Markus Laukel; Ludmila Chistoserdova; Mary E Lidstrom; Julia A Vorholt
Journal:  Eur J Biochem       Date:  2003-01

8.  Purification and molecular characterization of the tungsten-containing formaldehyde ferredoxin oxidoreductase from the hyperthermophilic archaeon Pyrococcus furiosus: the third of a putative five-member tungstoenzyme family.

Authors:  R Roy; S Mukund; G J Schut; D M Dunn; R Weiss; M W Adams
Journal:  J Bacteriol       Date:  1999-02       Impact factor: 3.490

9.  Genetics of the glutamate-mediated methylamine utilization pathway in the facultative methylotrophic beta-proteobacterium Methyloversatilis universalis FAM5.

Authors:  Ekaterina Latypova; Song Yang; Yi-Shun Wang; Tiansong Wang; Theodore A Chavkin; Murray Hackett; Hendrik Schäfer; Marina G Kalyuzhnaya
Journal:  Mol Microbiol       Date:  2009-11-25       Impact factor: 3.501

10.  Characterization of a novel methanol dehydrogenase in representatives of Burkholderiales: implications for environmental detection of methylotrophy and evidence for convergent evolution.

Authors:  Marina G Kalyuzhnaya; Krassimira R Hristova; Mary E Lidstrom; Ludmila Chistoserdova
Journal:  J Bacteriol       Date:  2008-04-04       Impact factor: 3.490
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  8 in total

1.  Characterization of bacterial diversity associated with deep sea ferromanganese nodules from the South China Sea.

Authors:  De-Chao Zhang; Yan-Xia Liu; Xin-Zheng Li
Journal:  J Microbiol       Date:  2015-08-27       Impact factor: 3.422

2.  Characterizing the Microbial Consortium L1 Capable of Efficiently Degrading Chlorimuron-Ethyl via Metagenome Combining 16S rDNA Sequencing.

Authors:  Xiang Li; Changming Lu; Yumeng Dai; Zhixiong Yu; Wu Gu; Tingting Li; Xinyu Li; Xu Li; Xiujuan Wang; Zhencheng Su; Mingkai Xu; Huiwen Zhang
Journal:  Front Microbiol       Date:  2022-06-23       Impact factor: 6.064

3.  Bacterial Selection during the Formation of Early-Stage Aerobic Granules in Wastewater Treatment Systems Operated Under Wash-Out Dynamics.

Authors:  David G Weissbrodt; Samuel Lochmatter; Sirous Ebrahimi; Pierre Rossi; Julien Maillard; Christof Holliger
Journal:  Front Microbiol       Date:  2012-09-13       Impact factor: 5.640

4.  A metagenomic insight into freshwater methane-utilizing communities and evidence for cooperation between the Methylococcaceae and the Methylophilaceae.

Authors:  David A C Beck; Marina G Kalyuzhnaya; Stephanie Malfatti; Susannah G Tringe; Tijana Glavina Del Rio; Natalia Ivanova; Mary E Lidstrom; Ludmila Chistoserdova
Journal:  PeerJ       Date:  2013-02-19       Impact factor: 2.984

5.  Methanesulfonate (MSA) Catabolic Genes from Marine and Estuarine Bacteria.

Authors:  Ana C Henriques; Paolo De Marco
Journal:  PLoS One       Date:  2015-05-15       Impact factor: 3.240

6.  Benzene and Naphthalene Degrading Bacterial Communities in an Oil Sands Tailings Pond.

Authors:  Fauziah F Rochman; Andriy Sheremet; Ivica Tamas; Alireza Saidi-Mehrabad; Joong-Jae Kim; Xiaoli Dong; Christoph W Sensen; Lisa M Gieg; Peter F Dunfield
Journal:  Front Microbiol       Date:  2017-09-28       Impact factor: 5.640

7.  Phylogenetically Diverse Aerobic Anoxygenic Phototrophic Bacteria Isolated from Epilithic Biofilms in Tama River, Japan.

Authors:  Setsuko Hirose; Katsumi Matsuura; Shin Haruta
Journal:  Microbes Environ       Date:  2016-07-23       Impact factor: 2.912

8.  C₁-Pathways in Methyloversatilis universalis FAM5: Genome Wide Gene Expression and Mutagenesis Studies.

Authors:  Nathan M Good; Andrew Lamb; David A C Beck; N Cecilia Martinez-Gomez; Marina G Kalyuzhnaya
Journal:  Microorganisms       Date:  2015-04-09
  8 in total

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