Literature DB >> 21725009

Genome sequence of the 1,4-dioxane-degrading Pseudonocardia dioxanivorans strain CB1190.

Christopher M Sales1, Shaily Mahendra, Ariel Grostern, Rebecca E Parales, Lynne A Goodwin, Tanja Woyke, Matt Nolan, Alla Lapidus, Olga Chertkov, Galina Ovchinnikova, Alexander Sczyrba, Lisa Alvarez-Cohen.   

Abstract

Pseudonocardia dioxanivorans CB1190 is the first bacterium reported to be capable of growth on the environmental contaminant 1,4-dioxane and the first member of the genus Pseudonocardia for which there is an annotated genome sequence. Preliminary analysis of the genome (chromosome and three plasmids) indicates that strain CB1190 possesses several multicomponent monooxygenases that could be involved in the aerobic degradation of 1,4-dioxane and other environmental contaminants.

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Year:  2011        PMID： 21725009      PMCID： PMC3165535          DOI： 10.1128/JB.00415-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  16 in total

1.  Specificity in the symbiotic association between fungus-growing ants and protective Pseudonocardia bacteria.

Authors:  Matías J Cafaro; Michael Poulsen; Ainslie E F Little; Shauna L Price; Nicole M Gerardo; Bess Wong; Alison E Stuart; Bret Larget; Patrick Abbot; Cameron R Currie
Journal:  Proc Biol Sci       Date:  2010-11-24       Impact factor: 5.349

2.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

3.  Analysis of the relative abundance of different types of bacteria capable of toluene degradation in a compost biofilter.

Authors:  P Juteau; R Larocque; D Rho; A LeDuy
Journal:  Appl Microbiol Biotechnol       Date:  1999-11       Impact factor: 4.813

4.  Pseudonocardia dioxanivorans sp. nov., a novel actinomycete that grows on 1,4-dioxane.

Authors:  Shaily Mahendra; Lisa Alvarez-Cohen
Journal:  Int J Syst Evol Microbiol       Date:  2005-03       Impact factor: 2.747

5.  Biodegradation of ether pollutants by Pseudonocardia sp. strain ENV478.

Authors:  Simon Vainberg; Kevin McClay; Hisako Masuda; Duane Root; Charles Condee; Gerben J Zylstra; Robert J Steffan
Journal:  Appl Environ Microbiol       Date:  2006-08       Impact factor: 4.792

6.  Kinetics of 1,4-dioxane biodegradation by monooxygenase-expressing bacteria.

Authors:  Shaily Mahendra; Lisa Alvarez-Cohen
Journal:  Environ Sci Technol       Date:  2006-09-01       Impact factor: 9.028

7.  Pseudonocardia asaccharolytica sp. nov. and Pseudonocardia sulfidoxydans sp. nov., two new dimethyl disulfide-degrading actinomycetes and emended description of the genus Pseudonocardia.

Authors:  K Reichert; A Lipski; S Pradella; E Stackebrandt; K Altendorf
Journal:  Int J Syst Bacteriol       Date:  1998-04

8.  Degradation of 1,4-dioxane by an actinomycete in pure culture.

Authors:  R E Parales; J E Adamus; N White; H D May
Journal:  Appl Environ Microbiol       Date:  1994-12       Impact factor: 4.792

9.  Pseudonocardia chloroethenivorans sp. nov., a chloroethene-degrading actinomycete.

Authors:  Seung-Bong Lee; Stuart E Strand; H David Stensel; Russell P Herwig
Journal:  Int J Syst Evol Microbiol       Date:  2004-01       Impact factor: 2.747

10.  Cloning and characterization of a gene cluster involved in tetrahydrofuran degradation in Pseudonocardia sp. strain K1.

Authors:  Barbara Thiemer; Jan R Andreesen; Thomas Schräder
Journal:  Arch Microbiol       Date:  2003-03-12       Impact factor: 2.552
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  14 in total

1.  Identification of biomarker genes to predict biodegradation of 1,4-dioxane.

Authors:  Phillip B Gedalanga; Peerapong Pornwongthong; Rebecca Mora; Sheau-Yun Dora Chiang; Brett Baldwin; Dora Ogles; Shaily Mahendra
Journal:  Appl Environ Microbiol       Date:  2014-03-14       Impact factor: 4.792

Review 2.  Gifted microbes for genome mining and natural product discovery.

Authors:  Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2016-08-12       Impact factor: 3.346

3.  Glyoxylate metabolism is a key feature of the metabolic degradation of 1,4-dioxane by Pseudonocardia dioxanivorans strain CB1190.

Authors:  Ariel Grostern; Christopher M Sales; Wei-Qin Zhuang; Onur Erbilgin; Lisa Alvarez-Cohen
Journal:  Appl Environ Microbiol       Date:  2012-02-10       Impact factor: 4.792

4.  Oxidation of the cyclic ethers 1,4-dioxane and tetrahydrofuran by a monooxygenase in two Pseudonocardia species.

Authors:  Christopher M Sales; Ariel Grostern; Juanito V Parales; Rebecca E Parales; Lisa Alvarez-Cohen
Journal:  Appl Environ Microbiol       Date:  2013-10-04       Impact factor: 4.792

5.  Isolation and Characterization of Novel Bacteria Capable of Degrading 1,4-Dioxane in the Presence of Diverse Co-Occurring Compounds.

Authors:  Tanmoy Roy Tusher; Takuya Shimizu; Chihiro Inoue; Mei-Fang Chien
Journal:  Microorganisms       Date:  2021-04-21

6.  A Multicomponent THF Hydroxylase Initiates Tetrahydrofuran Degradation in Cupriavidus metallidurans ZM02.

Authors:  Hao Ren; Haixia Wang; Yang Wang; Yiyang Chen; Zhenmei Lu
Journal:  Appl Environ Microbiol       Date:  2022-03-22       Impact factor: 5.005

7.  A novel taxonomic marker that discriminates between morphologically complex actinomycetes.

Authors:  Geneviève Girard; Bjørn A Traag; Vartul Sangal; Nadine Mascini; Paul A Hoskisson; Michael Goodfellow; Gilles P van Wezel
Journal:  Open Biol       Date:  2013-10-23       Impact factor: 6.411

8.  Complete genome sequence of Saccharothrix espanaensis DSM 44229(T) and comparison to the other completely sequenced Pseudonocardiaceae.

Authors:  Tina Strobel; Arwa Al-Dilaimi; Jochen Blom; Arne Gessner; Jörn Kalinowski; Marta Luzhetska; Alfred Pühler; Rafael Szczepanowski; Andreas Bechthold; Christian Rückert
Journal:  BMC Genomics       Date:  2012-09-09       Impact factor: 3.969

9.  The genome sequence of Streptomyces lividans 66 reveals a novel tRNA-dependent peptide biosynthetic system within a metal-related genomic island.

Authors:  Pablo Cruz-Morales; Erik Vijgenboom; Fernanda Iruegas-Bocardo; Geneviève Girard; Luis Alfonso Yáñez-Guerra; Hilda E Ramos-Aboites; Jean-Luc Pernodet; Jozef Anné; Gilles P van Wezel; Francisco Barona-Gómez
Journal:  Genome Biol Evol       Date:  2013       Impact factor: 3.416

10.  Complete genome sequence of producer of the glycopeptide antibiotic Aculeximycin Kutzneria albida DSM 43870T, a representative of minor genus of Pseudonocardiaceae.

Authors:  Yuriy Rebets; Bogdan Tokovenko; Igor Lushchyk; Christian Rückert; Nestor Zaburannyi; Andreas Bechthold; Jörn Kalinowski; Andriy Luzhetskyy
Journal:  BMC Genomics       Date:  2014-10-10       Impact factor: 3.969
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