Literature DB >> 21714557

Physical constraints on sesquiterpene diversity arising from cyclization of the eudesm-5-yl carbocation.

B Andes Hess1, Lidia Smentek, Joseph P Noel, Paul E O'Maille.   

Abstract

The biogenic origins of complex cyclic terpenes derive from the interplay of enzymes and the intrinsic reactivity of carbocation species at major branch-points along intramolecular cyclization pathways to ultimately determine the distribution of terpene skeletal types in nature. Solanaceous plants biosynthesize chemical defense compounds, largely derived from the eremophilane and spirovetivane-type sesquiterpenes. These hydrocarbon skeletons share a common biogenic origin, stemming from alternative Wagner-Meerwein rearrangements of the eudesm-5-yl carbocation during the cyclization of farnesyl pyrophosphate (FPP) catalyzed by sesquiterpene synthases. While the spirojatamane skeleton shares the same carbocation intermediate, this class of sesquiterpenes has not been reported in the Solanaceae and is exceedingly rare in nature. To investigate the physical basis for alternative rearrangements of the eudesm-5-yl carbocation, we carried out quantum mechanics (QM) analyses to calculate the allowable conformations, energies, and transition states linking conformers of the eudesm-5-yl carbocation to the eremophilene, spirovetivane, and spirojatamane skeletons. Additionally, we conducted parallel investigations on simplified decalin carbocation systems to examine the contribution of ring substituents to allowable conformations and rearrangement pathways. Our study reveals that ring substituents expand the conformational space accessible to the eudesm-5-yl carbocation while sterically blocking rearrangements in certain contexts. From our analysis, we define a conformational threshold for each possible rearrangement based on dihedral angles describing transition state geometry. Further, our calculations indicate that methylene migration rearrangements leading to spiro compounds are thermodynamically dominant in the eudesm-5-yl and simpler decalin carabocation systems. Interestingly, the theoretical abundance of sesquiterpene skeletal types arising from the intrinsic reactivity of the eudesm-5-yl carbocation stands in sharp contrast to their currently known natural abundance. The implications of these results for the catalytic tragectories catalyzed by sesquiterpene synthases are discussed.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21714557     DOI: 10.1021/ja203342p

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  8 in total

Review 1.  Structural and Chemical Biology of Terpenoid Cyclases.

Authors:  David W Christianson
Journal:  Chem Rev       Date:  2017-08-25       Impact factor: 60.622

Review 2.  Terpenoid synthase structures: a so far incomplete view of complex catalysis.

Authors:  Yang Gao; Richard B Honzatko; Reuben J Peters
Journal:  Nat Prod Rep       Date:  2012-08-21       Impact factor: 13.423

Review 3.  From Molecular Phylogenetics to Quantum Chemistry: Discovering Enzyme Design Principles through Computation.

Authors:  Troy Wymore; Charles L Brooks
Journal:  Comput Struct Biotechnol J       Date:  2012-11-30       Impact factor: 7.271

4.  Modulation of inherent dynamical tendencies of the bisabolyl cation via preorganization in epi-isozizaene synthase.

Authors:  Ryan P Pemberton; Krystina C Ho; Dean J Tantillo
Journal:  Chem Sci       Date:  2015-02-02       Impact factor: 9.825

5.  Mechanistically informed predictions of binding modes for carbocation intermediates of a sesquiterpene synthase reaction.

Authors:  T E O'Brien; S J Bertolani; D J Tantillo; J B Siegel
Journal:  Chem Sci       Date:  2016-03-21       Impact factor: 9.825

6.  Linking Terpene Synthases to Sesquiterpene Metabolism in Grapevine Flowers.

Authors:  Samuel Jacobus Smit; Melané Alethea Vivier; Philip Richard Young
Journal:  Front Plant Sci       Date:  2019-02-21       Impact factor: 5.753

7.  Defining the Product Chemical Space of Monoterpenoid Synthases.

Authors:  Boxue Tian; C Dale Poulter; Matthew P Jacobson
Journal:  PLoS Comput Biol       Date:  2016-08-12       Impact factor: 4.475

8.  Understanding the role of active site residues in CotB2 catalysis using a cluster model.

Authors:  Keren Raz; Ronja Driller; Thomas Brück; Bernhard Loll; Dan T Major
Journal:  Beilstein J Org Chem       Date:  2020-01-08       Impact factor: 2.883

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.