Literature DB >> 21713261

High temperatures enhance cooperative motions between CBM and catalytic domains of a thermostable cellulase: mechanism insights from essential dynamics.

Paulo Ricardo Batista1, Mauricio Garcia de Souza Costa, Pedro Geraldo Pascutti, Paulo Mascarello Bisch, Wanderley de Souza.   

Abstract

Cellulases from thermophiles are capable of cleaving sugar chains from cellulose efficiently at high temperatures. The thermo-resistant Cel9A-68 cellulase possesses two important domains: CBM and a catalytic domain connected by a Pro/Ser/Thr rich linker. These domains act cooperatively to allow efficient catalysis. Despite exhaustive efforts to characterize cellulase binding and mechanism of action, a detailed description of the cellulose intrinsic flexibility is still lacking. From computational simulations we studied the temperature influence on the enzyme plasticity, prior to substrate binding. Interestingly, we observed an enhancement of collective motions at high temperatures. These motions are the most representative and describe an intrinsic hinge bending transition. A detailed analysis of these motions revealed an interdomain approximation where D459 and G460, located at the linker region, are the hinge residues. Therefore, we propose a new putative site for mutagenesis targeting the modulation of such conformational transition that may be crucial for activity.

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Year:  2011        PMID: 21713261     DOI: 10.1039/c0cp02697b

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  11 in total

1.  Molecular dynamics study of HIV-1 RT-DNA-nevirapine complexes explains NNRTI inhibition and resistance by connection mutations.

Authors:  R S K Vijayan; Eddy Arnold; Kalyan Das
Journal:  Proteins       Date:  2013-11-22

2.  Extreme Thermophiles: Moving beyond single-enzyme biocatalysis.

Authors:  Andrew D Frock; Robert M Kelly
Journal:  Curr Opin Chem Eng       Date:  2012-11-12       Impact factor: 5.163

3.  A molecular dynamics approach to explore the structural characterization of cataract causing mutation R58H on human γD crystallin.

Authors:  Rohini Karunakaran; P S Srikumar
Journal:  Mol Cell Biochem       Date:  2018-03-12       Impact factor: 3.396

4.  Multifunctional cellulase catalysis targeted by fusion to different carbohydrate-binding modules.

Authors:  Johnnie A Walker; Taichi E Takasuka; Kai Deng; Christopher M Bianchetti; Hannah S Udell; Ben M Prom; Hyunkee Kim; Paul D Adams; Trent R Northen; Brian G Fox
Journal:  Biotechnol Biofuels       Date:  2015-12-21       Impact factor: 6.040

Review 5.  Computational Methodologies for Real-Space Structural Refinement of Large Macromolecular Complexes.

Authors:  Boon Chong Goh; Jodi A Hadden; Rafael C Bernardi; Abhishek Singharoy; Ryan McGreevy; Till Rudack; C Keith Cassidy; Klaus Schulten
Journal:  Annu Rev Biophys       Date:  2016-05-02       Impact factor: 12.981

6.  Expression and functional analysis of a glycoside hydrolase family 45 endoglucanase from Rhizopus stolonifer.

Authors:  Bin Tang; Yingying Zhang; Yaping Yang; Zhewei Song; Xianglin Li
Journal:  World J Microbiol Biotechnol       Date:  2014-08-28       Impact factor: 3.312

7.  Impact of M36I polymorphism on the interaction of HIV-1 protease with its substrates: insights from molecular dynamics.

Authors:  Mauricio G S Costa; Técio G Benetti-Barbosa; Nathan Desdouits; Arnaud Blondel; Paulo M Bisch; Pedro G Pascutti; Paulo R Batista
Journal:  BMC Genomics       Date:  2014-10-27       Impact factor: 3.969

8.  Plant carbohydrate binding module enhances activity of hybrid microbial cellulase enzyme.

Authors:  Caitlin S Byrt; Ricky Cahyanegara; Christopher P L Grof
Journal:  Front Plant Sci       Date:  2012-11-19       Impact factor: 5.753

9.  Reassembly and co-crystallization of a family 9 processive endoglucanase from its component parts: structural and functional significance of the intermodular linker.

Authors:  Svetlana Petkun; Inna Rozman Grinberg; Raphael Lamed; Sadanari Jindou; Tal Burstein; Oren Yaniv; Yuval Shoham; Linda J W Shimon; Edward A Bayer; Felix Frolow
Journal:  PeerJ       Date:  2015-09-15       Impact factor: 2.984

10.  Molecular dynamics study of enhanced Man5B enzymatic activity.

Authors:  Rafael C Bernardi; Isaac Cann; Klaus Schulten
Journal:  Biotechnol Biofuels       Date:  2014-06-05       Impact factor: 6.040

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