Literature DB >> 21712247

MetATT: a web-based metabolomics tool for analyzing time-series and two-factor datasets.

Jianguo Xia1, Igor V Sinelnikov, David S Wishart.   

Abstract

SUMMARY: Time-series and multifactor studies have become increasingly common in metabolomic studies. Common tasks for analyzing data from these relatively complex experiments include identification of major variations associated with each experimental factor, comparison of temporal profiles across different biological conditions, as well as detection and validation of the presence of interactions. Here we introduce MetATT, a web-based tool for time-series and two-factor metabolomic data analysis. MetATT offers a number of complementary approaches including 3D interactive principal component analysis, two-way heatmap visualization, two-way ANOVA, ANOVA-simultaneous component analysis and multivariate empirical Bayes time-series analysis. These procedures are presented through an intuitive web interface. At the end of each session, a detailed analysis report is generated to facilitate understanding of the results. AVAILABILITY: Freely available at http://metatt.metabolomics.ca CONTACT: jianguox@ualberta.ca.

Mesh:

Year:  2011        PMID: 21712247     DOI: 10.1093/bioinformatics/btr392

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  25 in total

1.  Using metabolomics to assess the sub-lethal effects of zinc and boscalid on an estuarine polychaete worm over time.

Authors:  Georgia M Sinclair; Allyson L O'Brien; Michael Keough; David P De Souza; Saravanan Dayalan; Komal Kanojia; Konstantinos Kouremenos; Dedreia L Tull; Rhys A Coleman; Oliver A H Jones; Sara M Long
Journal:  Metabolomics       Date:  2019-07-31       Impact factor: 4.290

2.  Lung injury-induced skeletal muscle wasting in aged mice is linked to alterations in long chain fatty acid metabolism.

Authors:  D Clark Files; Amro Ilaiwy; Traci L Parry; Kevin W Gibbs; Chun Liu; James R Bain; Osvaldo Delbono; Michael J Muehlbauer; Monte S Willis
Journal:  Metabolomics       Date:  2016-07-26       Impact factor: 4.290

3.  Microscale Mass Spectrometry Analysis of Extracellular Metabolites in Live Multicellular Tumor Spheroids.

Authors:  Mei Sun; Xiang Tian; Zhibo Yang
Journal:  Anal Chem       Date:  2017-08-16       Impact factor: 6.986

4.  The Mammalian Malonyl-CoA Synthetase ACSF3 Is Required for Mitochondrial Protein Malonylation and Metabolic Efficiency.

Authors:  Caitlyn E Bowman; Susana Rodriguez; Ebru S Selen Alpergin; Michelle G Acoba; Liang Zhao; Thomas Hartung; Steven M Claypool; Paul A Watkins; Michael J Wolfgang
Journal:  Cell Chem Biol       Date:  2017-05-04       Impact factor: 8.116

5.  Differential impact of nutrition on developmental and metabolic gene expression during fruiting body development in Neurospora crassa.

Authors:  Zheng Wang; Nina Lehr; Frances Trail; Jeffrey P Townsend
Journal:  Fungal Genet Biol       Date:  2012-03-26       Impact factor: 3.495

6.  NMR-based urine metabolic profiling and immunohistochemistry analysis of nephron changes in a mouse model of hypoxia-induced acute kidney injury.

Authors:  Tafadzwa Chihanga; Hannah N Ruby; Qing Ma; Sabina Bashir; Prasad Devarajan; Michael A Kennedy
Journal:  Am J Physiol Renal Physiol       Date:  2018-07-11

7.  Metabolomic basis for response to high dose vitamin D in critical illness.

Authors:  Karin Amrein; Jessica A Lasky-Su; Harald Dobnig; Kenneth B Christopher
Journal:  Clin Nutr       Date:  2020-09-28       Impact factor: 7.324

8.  Response of Key Metabolites during a UV-A Exposure Time-Series in the Cyanobacterium Chlorogloeopsis fritschii PCC 6912.

Authors:  Bethan Kultschar; Ed Dudley; Steve Wilson; Carole Anne Llewellyn
Journal:  Microorganisms       Date:  2021-04-24

9.  MetaboAnalyst 2.0--a comprehensive server for metabolomic data analysis.

Authors:  Jianguo Xia; Rupasri Mandal; Igor V Sinelnikov; David Broadhurst; David S Wishart
Journal:  Nucleic Acids Res       Date:  2012-05-02       Impact factor: 16.971

Review 10.  Mass spectrometry-based metabolomics to elucidate functions in marine organisms and ecosystems.

Authors:  Sophie Goulitquer; Philippe Potin; Thierry Tonon
Journal:  Mar Drugs       Date:  2012-04-05       Impact factor: 6.085

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