Literature DB >> 21710993

Molecular mechanism for eliminylation, a newly discovered post-translational modification.

Zhihong Ke1, Gregory K Smith, Yingkai Zhang, Hua Guo.   

Abstract

The newly discovered bacterial phosphothreonine lyases perform a post-translational modification of host cell signaling proteins through a novel catalytic mechanism that irreversibly removes the phosphate group from a phosphorylated threonine via β-elimination. This "eliminylation" reaction is shown by ab initio QM/MM studies to proceed via an E1cB-like pathway, in which the carbanion intermediate is stabilized by an enzyme oxyanion hole provided by Lys104 and Tyr158 of SpvC.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21710993      PMCID: PMC3140633          DOI: 10.1021/ja204378q

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  22 in total

Review 1.  Computer simulations of enzyme catalysis: methods, progress, and insights.

Authors:  Arieh Warshel
Journal:  Annu Rev Biophys Biomol Struct       Date:  2003-02-05

Review 2.  Mechanisms and free energies of enzymatic reactions.

Authors:  Jiali Gao; Shuhua Ma; Dan T Major; Kwangho Nam; Jingzhi Pu; Donald G Truhlar
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

3.  Structural basis for the catalytic mechanism of phosphothreonine lyase.

Authors:  Linjie Chen; Huayi Wang; Jie Zhang; Lichuan Gu; Niu Huang; Jian-Min Zhou; Jijie Chai
Journal:  Nat Struct Mol Biol       Date:  2007-12-16       Impact factor: 15.369

Review 4.  Targeting of immune signalling networks by bacterial pathogens.

Authors:  Igor E Brodsky; Ruslan Medzhitov
Journal:  Nat Cell Biol       Date:  2009-05       Impact factor: 28.824

5.  The enolase superfamily: a general strategy for enzyme-catalyzed abstraction of the alpha-protons of carboxylic acids.

Authors:  P C Babbitt; M S Hasson; J E Wedekind; D R Palmer; W C Barrett; G H Reed; I Rayment; D Ringe; G L Kenyon; J A Gerlt
Journal:  Biochemistry       Date:  1996-12-24       Impact factor: 3.162

6.  The phosphothreonine lyase activity of a bacterial type III effector family.

Authors:  Hongtao Li; Hao Xu; Yan Zhou; Jie Zhang; Chengzu Long; Shuqin Li; She Chen; Jian-Min Zhou; Feng Shao
Journal:  Science       Date:  2007-02-16       Impact factor: 47.728

7.  Active-site dynamics of SpvC virulence factor from Salmonella typhimurium and density functional theory study of phosphothreonine lyase catalysis.

Authors:  Gregory K Smith; Zhihong Ke; Alvan C Hengge; Dingguo Xu; Daiqian Xie; Hua Guo
Journal:  J Phys Chem B       Date:  2009-11-19       Impact factor: 2.991

8.  Structural insights into the enzymatic mechanism of the pathogenic MAPK phosphothreonine lyase.

Authors:  Yongqun Zhu; Hongtao Li; Chengzu Long; Liyan Hu; Hao Xu; Liping Liu; She Chen; Da-Cheng Wang; Feng Shao
Journal:  Mol Cell       Date:  2007-11-29       Impact factor: 17.970

9.  A functionally diverse enzyme superfamily that abstracts the alpha protons of carboxylic acids.

Authors:  P C Babbitt; G T Mrachko; M S Hasson; G W Huisman; R Kolter; D Ringe; G A Petsko; G L Kenyon; J A Gerlt
Journal:  Science       Date:  1995-02-24       Impact factor: 47.728

10.  Primary and secondary kinetic isotope effects as probes of the mechanism of yeast enolase.

Authors:  S R Anderson; V E Anderson; J R Knowles
Journal:  Biochemistry       Date:  1994-08-30       Impact factor: 3.162

View more
  13 in total

Review 1.  Structural insight into effector proteins of Gram-negative bacterial pathogens that modulate the phosphoproteome of their host.

Authors:  Andrey M Grishin; Ksenia A Beyrakhova; Miroslaw Cygler
Journal:  Protein Sci       Date:  2015-02-06       Impact factor: 6.725

2.  Born-Oppenheimer Ab Initio QM/MM Molecular Dynamics Simulations of Enzyme Reactions.

Authors:  Y Zhou; S Wang; Y Li; Y Zhang
Journal:  Methods Enzymol       Date:  2016-06-23       Impact factor: 1.600

3.  Sirtuin Deacetylation Mechanism and Catalytic Role of the Dynamic Cofactor Binding Loop.

Authors:  Yawei Shi; Yanzi Zhou; Shenglong Wang; Yingkai Zhang
Journal:  J Phys Chem Lett       Date:  2013-02-07       Impact factor: 6.475

4.  Aging mechanism of soman inhibited acetylcholinesterase.

Authors:  Gulseher Sarah Sirin; Yanzi Zhou; Lee Lior-Hoffmann; Shenglong Wang; Yingkai Zhang
Journal:  J Phys Chem B       Date:  2012-09-28       Impact factor: 2.991

5.  Revelation of a catalytic calcium-binding site elucidates unusual metal dependence of a human apyrase.

Authors:  David W Rooklin; Min Lu; Yingkai Zhang
Journal:  J Am Chem Soc       Date:  2012-09-10       Impact factor: 15.419

6.  Coenzyme M biosynthesis in bacteria involves phosphate elimination by a functionally distinct member of the aspartase/fumarase superfamily.

Authors:  Sarah E Partovi; Florence Mus; Andrew E Gutknecht; Hunter A Martinez; Brian P Tripet; Bernd Markus Lange; Jennifer L DuBois; John W Peters
Journal:  J Biol Chem       Date:  2018-02-06       Impact factor: 5.157

7.  Two symmetric arginine residues play distinct roles in Thermus thermophilus Argonaute DNA guide strand-mediated DNA target cleavage.

Authors:  Jinping Lei; Gang Sheng; Peter Pak-Hang Cheung; Shenglong Wang; Yu Li; Xin Gao; Yingkai Zhang; Yanli Wang; Xuhui Huang
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-27       Impact factor: 11.205

Review 8.  Bacterial virulence mediated by orthogonal post-translational modification.

Authors:  Kaitlin A Chambers; Rebecca A Scheck
Journal:  Nat Chem Biol       Date:  2020-09-17       Impact factor: 15.040

9.  How is acetylcholinesterase phosphonylated by soman? An ab initio QM/MM molecular dynamics study.

Authors:  Gulseher Sarah Sirin; Yingkai Zhang
Journal:  J Phys Chem A       Date:  2014-05-09       Impact factor: 2.781

10.  Mechanistic insights into a classic wonder drug--aspirin.

Authors:  Jinping Lei; Yanzi Zhou; Daiqian Xie; Yingkai Zhang
Journal:  J Am Chem Soc       Date:  2014-12-22       Impact factor: 15.419

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.