Literature DB >> 21710303

Characterizing weak protein-protein complexes by NMR residual dipolar couplings.

Malene Ringkjøbing Jensen1, Jose-Luis Ortega-Roldan, Loïc Salmon, Nico van Nuland, Martin Blackledge.   

Abstract

Protein-protein interactions occur with a wide range of affinities from tight complexes characterized by femtomolar dissociation constants to weak, and more transient, complexes of millimolar affinity. Many of the weak and transiently formed protein-protein complexes have escaped characterization due to the difficulties in obtaining experimental parameters that report on the complexes alone without contributions from the unbound, free proteins. Here, we review recent developments for characterizing the structures of weak protein-protein complexes using nuclear magnetic resonance spectroscopy with special emphasis on the utility of residual dipolar couplings.

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Year:  2011        PMID: 21710303     DOI: 10.1007/s00249-011-0720-5

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  51 in total

Review 1.  Mapping protein-protein interactions in solution by NMR spectroscopy.

Authors:  Erik R P Zuiderweg
Journal:  Biochemistry       Date:  2002-01-08       Impact factor: 3.162

2.  Solution structure, dynamics and thermodynamics of the three SH3 domains of CD2AP.

Authors:  Jose L Ortega Roldan; Martin Blackledge; Nico A J van Nuland; Ana I Azuaga
Journal:  J Biomol NMR       Date:  2011-04-26       Impact factor: 2.835

3.  Three-dimensional structure of the weakly associated protein homodimer SeR13 using RDCs and paramagnetic surface mapping.

Authors:  Hsiau-Wei Lee; Greg Wylie; Sonal Bansal; Xu Wang; Adam W Barb; Megan A Macnaughtan; Asli Ertekin; Gaetano T Montelione; James H Prestegard
Journal:  Protein Sci       Date:  2010-09       Impact factor: 6.725

Review 4.  Protein binding specificity versus promiscuity.

Authors:  Gideon Schreiber; Amy E Keating
Journal:  Curr Opin Struct Biol       Date:  2010-11-09       Impact factor: 6.809

Review 5.  Weak alignment NMR: a hawk-eyed view of biomolecular structure.

Authors:  Ad Bax; Alexander Grishaev
Journal:  Curr Opin Struct Biol       Date:  2005-10       Impact factor: 6.809

6.  Ubiquitin binds to and regulates a subset of SH3 domains.

Authors:  Svetoslava D Stamenova; Michael E French; Yuan He; Smitha A Francis; Zachary B Kramer; Linda Hicke
Journal:  Mol Cell       Date:  2007-01-26       Impact factor: 17.970

7.  Protein conformational flexibility from structure-free analysis of NMR dipolar couplings: quantitative and absolute determination of backbone motion in ubiquitin.

Authors:  Loïc Salmon; Guillaume Bouvignies; Phineus Markwick; Nils Lakomek; Scott Showalter; Da-Wei Li; Korvin Walter; Christian Griesinger; Rafael Brüschweiler; Martin Blackledge
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

8.  Quantitative description of backbone conformational sampling of unfolded proteins at amino acid resolution from NMR residual dipolar couplings.

Authors:  Gabrielle Nodet; Loïc Salmon; Valéry Ozenne; Sebastian Meier; Malene Ringkjøbing Jensen; Martin Blackledge
Journal:  J Am Chem Soc       Date:  2009-12-16       Impact factor: 15.419

Review 9.  Nuclear magnetic resonance provides a quantitative description of protein conformational flexibility on physiologically important time scales.

Authors:  Loïc Salmon; Guillaume Bouvignies; Phineus Markwick; Martin Blackledge
Journal:  Biochemistry       Date:  2011-03-21       Impact factor: 3.162

10.  Distinct interactions between ubiquitin and the SH3 domains involved in immune signaling.

Authors:  Jinho Kang; Sunmi Kang; Hyuk Nam Kwon; Wen He; Sunghyouk Park
Journal:  Biochim Biophys Acta       Date:  2008-05-15
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  3 in total

Review 1.  Modern Technologies of Solution Nuclear Magnetic Resonance Spectroscopy for Three-dimensional Structure Determination of Proteins Open Avenues for Life Scientists.

Authors:  Toshihiko Sugiki; Naohiro Kobayashi; Toshimichi Fujiwara
Journal:  Comput Struct Biotechnol J       Date:  2017-04-13       Impact factor: 7.271

Review 2.  Current Experimental Methods for Characterizing Protein-Protein Interactions.

Authors:  Mi Zhou; Qing Li; Renxiao Wang
Journal:  ChemMedChem       Date:  2016-02-11       Impact factor: 3.466

Review 3.  Sparse labeling of proteins: structural characterization from long range constraints.

Authors:  James H Prestegard; David A Agard; Kelley W Moremen; Laura A Lavery; Laura C Morris; Kari Pederson
Journal:  J Magn Reson       Date:  2014-04       Impact factor: 2.229

  3 in total

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