Literature DB >> 21701697

Activity-Based Protein Profiling (ABPP) and Click Chemistry (CC)-ABPP by MudPIT Mass Spectrometry.

Anna E Speers1, Benjamin F Cravatt.   

Abstract

Activity-based protein profiling (ABPP) is a chemical proteomic method for functional interrogation of enzymes within complex proteomes. This Unit presents a protocol for in vitro and in vivo labeling using ABPP and Click Chemistry (CC)-ABPP probes for in-depth profiling using the Multi-dimensional Protein Identification Technology (MudPIT) analysis platform.

Entities:  

Year:  2009        PMID： 21701697      PMCID： PMC3119539          DOI： 10.1002/9780470559277.ch090138

Source DB:  PubMed          Journal:  Curr Protoc Chem Biol        ISSN： 2160-4762


  25 in total

1.  Active site-directed protein regulation.

Authors:  B Kobe; B E Kemp
Journal:  Nature       Date:  1999-11-25       Impact factor: 49.962

2.  Activity-based protein profiling: the serine hydrolases.

Authors:  Y Liu; M P Patricelli; B F Cravatt
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-21       Impact factor: 11.205

Review 3.  Protein microarrays and proteomics.

Authors:  Gavin MacBeath
Journal:  Nat Genet       Date:  2002-12       Impact factor: 38.330

4.  Proteomic profiling of metalloprotease activities with cocktails of active-site probes.

Authors:  Stephan A Sieber; Sherry Niessen; Heather S Hoover; Benjamin F Cravatt
Journal:  Nat Chem Biol       Date:  2006-03-26       Impact factor: 15.040

Review 5.  Mechanism-based profiling of enzyme families.

Authors:  Michael J Evans; Benjamin F Cravatt
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

6.  Functional interrogation of the kinome using nucleotide acyl phosphates.

Authors:  Matthew P Patricelli; A Katrin Szardenings; Marek Liyanage; Tyzoon K Nomanbhoy; Min Wu; Helge Weissig; Arwin Aban; Doris Chun; Stephen Tanner; John W Kozarich
Journal:  Biochemistry       Date:  2007-01-16       Impact factor: 3.162

7.  Tandem orthogonal proteolysis-activity-based protein profiling (TOP-ABPP)--a general method for mapping sites of probe modification in proteomes.

Authors:  Eranthie Weerapana; Anna E Speers; Benjamin F Cravatt
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

Review 8.  Activity-based protein profiling: from enzyme chemistry to proteomic chemistry.

Authors:  Benjamin F Cravatt; Aaron T Wright; John W Kozarich
Journal:  Annu Rev Biochem       Date:  2008       Impact factor: 23.643

Review 9.  Application of activity-based probes to the study of enzymes involved in cancer progression.

Authors:  Margot G Paulick; Matthew Bogyo
Journal:  Curr Opin Genet Dev       Date:  2008-02-21       Impact factor: 5.578

10.  Enzyme activity profiles of the secreted and membrane proteome that depict cancer cell invasiveness.

Authors:  Nadim Jessani; Yongsheng Liu; Mark Humphrey; Benjamin F Cravatt
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-29       Impact factor: 11.205
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  41 in total

1.  Benzo[ a]pyrene Induction of Glutathione S-Transferases: An Activity-Based Protein Profiling Investigation.

Authors:  Ethan G Stoddard; Bryan J Killinger; Subhasree A Nag; Jude Martin; Richard Corley; Jordan N Smith; Aaron T Wright
Journal:  Chem Res Toxicol       Date:  2019-04-12       Impact factor: 3.739

2.  Pyrethroid activity-based probes for profiling cytochrome P450 activities associated with insecticide interactions.

Authors:  Hanafy M Ismail; Paul M O'Neill; David W Hong; Robert D Finn; Colin J Henderson; Aaron T Wright; Benjamin F Cravatt; Janet Hemingway; Mark J I Paine
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-18       Impact factor: 11.205

3.  Clickable photoaffinity ligands for the human serotonin transporter based on the selective serotonin reuptake inhibitor (S)-citalopram.

Authors:  Nageswari Yarravarapu; Laura Geffert; Christopher K Surratt; Michael Cascio; David J Lapinsky
Journal:  Bioorg Med Chem Lett       Date:  2018-09-22       Impact factor: 2.823

Review 4.  Selective and Effective: Current Progress in Computational Structure-Based Drug Discovery of Targeted Covalent Inhibitors.

Authors:  Giulia Bianco; David S Goodsell; Stefano Forli
Journal:  Trends Pharmacol Sci       Date:  2020-11-02       Impact factor: 14.819

5.  Mapping in vivo target interaction profiles of covalent inhibitors using chemical proteomics with label-free quantification.

Authors:  Eva J van Rooden; Bogdan I Florea; Hui Deng; Marc P Baggelaar; Annelot C M van Esbroeck; Juan Zhou; Herman S Overkleeft; Mario van der Stelt
Journal:  Nat Protoc       Date:  2018-03-22       Impact factor: 13.491

6.  Activity-Based Probe for N-Acylethanolamine Acid Amidase.

Authors:  Elisa Romeo; Stefano Ponzano; Andrea Armirotti; Maria Summa; Fabio Bertozzi; Gianpiero Garau; Tiziano Bandiera; Daniele Piomelli
Journal:  ACS Chem Biol       Date:  2015-06-23       Impact factor: 5.100

7.  Acute synthesis of CPEB is required for plasticity of visual avoidance behavior in Xenopus.

Authors:  Wanhua Shen; Han-Hsuan Liu; Lucio Schiapparelli; Daniel McClatchy; Hai-Yan He; John R Yates; Hollis T Cline
Journal:  Cell Rep       Date:  2014-02-13       Impact factor: 9.423

8.  Application of activity-based protein profiling to study enzyme function in adipocytes.

Authors:  Andrea Galmozzi; Eduardo Dominguez; Benjamin F Cravatt; Enrique Saez
Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

9.  HILAQ: A Novel Strategy for Newly Synthesized Protein Quantification.

Authors:  Yuanhui Ma; Daniel B McClatchy; Salim Barkallah; William W Wood; John R Yates
Journal:  J Proteome Res       Date:  2017-05-03       Impact factor: 4.466

10.  Branched Fatty Acid Esters of Hydroxy Fatty Acids Are Preferred Substrates of the MODY8 Protein Carboxyl Ester Lipase.

Authors:  Matthew J Kolar; Siddhesh S Kamat; William H Parsons; Edwin A Homan; Tim Maher; Odile D Peroni; Ismail Syed; Karianne Fjeld; Anders Molven; Barbara B Kahn; Benjamin F Cravatt; Alan Saghatelian
Journal:  Biochemistry       Date:  2016-08-10       Impact factor: 3.162
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