| Literature DB >> 21698158 |
Jae Jeong Yang1, Lisa Y Cho, Seung Hyun Ma, Kwang-Pil Ko, Aesun Shin, Bo Youl Choi, Dong Soo Han, Kyu Sang Song, Yong Sung Kim, Soung-Hoon Chang, Hai-Rim Shin, Daehee Kang, Keun-Young Yoo, Sue K Park.
Abstract
BACKGROUND: CagA cellular interaction via activation of the ERK signaling pathway may be a starting point in the development of gastric cancer. This study aimed to evaluate whether genes involved in ERK downstream signaling pathways activated by CagA are susceptible genetic markers for gastric cancer.Entities:
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Year: 2011 PMID: 21698158 PMCID: PMC3116873 DOI: 10.1371/journal.pone.0021155
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Basic characteristics of the study populations: Discovery and extension sets of community controls and gastric cancer cases from the KMCC, Chungnam University Hospital and Hanyang University GURI Hospital.
| Discovery phase | Extension phase | Total gastric cancer cases | ||||||||
| Case(N = 81) | Control(N = 85) |
| Case(N = 398) | Control(N = 360) |
| Case(N = 479) | Control(N = 445) |
| ||
|
| Mean (SD) | 64.2 (±7.9) | 63.3 (±8.0) | 0.44 | 61.6 (±10.4) | 63.2 (±8.3) | 0.02 | 62.0 (±10.1) | 63.2 (±8.2) | 0.06 |
|
| Female | 26 (32.1) | 26 (30.6) | 0.83 | 131 (32.9) | 115 (31.9) | 0.78 | 157 (32.8) | 141 (31.7) | 0.72 |
|
| Positive (+) | 72 (88.9) | 68 (80.0) | 0.11 | 353 (88.7) | 309 (85.8) | 0.24 | 425 (88.7) | 377 (84.7) | 0.07 |
|
| Positive (+) | 78 (96.3) | 74 (87.1) | 0.03 | 366 (91.9) | 318 (88.3) | 0.09 | 444 (92.7) | 392 (88.1) | 0.02 |
|
| Positive (+) | 50 (61.7) | 46 (54.1) | 0.32 | 279 (70.1) | 240 (66.7) | 0.31 | 329 (68.7) | 286 (64.3) | 0.16 |
|
| Ever smokers | 52 (64.2) | 47 (55.3) | 0.24 | 247 (62.1) | 196 (54.4) | 0.10 | 300 (62.6) | 243 (54.6) | 0.01 |
|
| Ever drinkers | 46 (56.8) | 50 (58.8) | 0.79 | 250 (62.8) | 213 (59.2) | 0.28 | 296 (61.9) | 263 (59.1) | 0.38 |
|
| Positive (+) | 14 (21.9) | 9 (14.1) | 0.25 | 62 (17.8) | 53 (19.1) | 0.69 | 76 (18.5) | 62 (18.1) | 0.91 |
Incidence gastric cancer cases identified in December 2005 and their age-sex matched controls from the KMCC.
Newly identified and prevalent gastric cancer cases from the KMCC and newly enrolled gastric cancer cases from Chungnam University Hospital and Hanyang University GURI Hospital and their age-sex matched controls from the KMCC.
Ever smokers were defined as former and current smokers.
Ever drinkers were defined as former and current drinkers.
Significant SNPs for candidate genes involved in downstream signaling pathways activated by CagA associated with gastric cancer in the discovery phase.
| GENE | db SNP ID | #SNPs | MAF (%) | CHR | CHRposition |
|
| OR (95% CI) |
|
| rs5999749 | 13 | C ( 9.4) | 22 | 20517660 | 0.0012 | 0.0011 | 2.83 (1.42–5.65) |
|
| rs9418677 | 103 | C (40.5) | 10 | 128695397 | 0.0052 | 0.0048 | 1.90 (1.18–3.05) |
| rs4635002 | A (11.3) | 128752669 | 0.0119 | 0.0168 | 0.44 (0.18–1.07) | |||
| rs7068941 | A (11.8) | 128718078 | 0.0418 | 0.0667 | 0.41 (0.17–0.99) | |||
| rs7917277 | T (11.8) | 128754664 | 0.0418 | 0.0667 | 0.41 (0.17–0.99) | |||
| rs9418832 | A (11.8) | 128757891 | 0.0418 | 0.0667 | 0.41 (0.17–0.99) | |||
| rs9418737 | A (11.8) | 128757840 | 0.0418 | 0.0667 | 0.41 (0.17–0.99) | |||
|
| rs10901081 | 30 | A (21.2) | 9 | 133586496 | 0.0109 | 0.0103 | 0.49 (0.27–0.91) |
| rs7853122 | G (17.1) | 133570432 | 0.0199 | 0.0248 | 0.47 (0.24–0.94) | |||
| rs4991743 | A (17.1) | 133597568 | 0.0199 | 0.0248 | 0.47 (0.24–0.94) | |||
| rs7047157 | C (17.1) | 133503399 | 0.0199 | 0.0248 | 0.47 (0.24–0.94) | |||
| rs4474069 | T (17.5) | 133501207 | 0.0248 | 0.0260 | 0.49 (0.25–0.98) | |||
| rs1544305 | C (16.5) | 133480201 | 0.0355 | 0.0361 | 0.50 (0.25–1.02) | |||
|
| rs530801 | 16 | A (34.5) | 1 | 111968778 | 0.0184 | 0.0186 | 0.57 (0.35–0.94) |
| rs558989 | G (32.9) | 112043318 | 0.0207 | 0.0209 | 0.57 (0.34–0.95) | |||
| rs17028287 | T ( 4.2) | 112046321 | 0.0215 | 0.0238 | 2.46 (0.96–6.28) | |||
| rs571020 | G (33.9) | 112002851 | 0.0244 | 0.0266 | 0.59 (0.37–0.96) | |||
| rs846261 | A (32.4) | 112054920 | 0.0305 | 0.0378 | 0.60 (0.36–0.99) | |||
|
| rs747182 | 5 | G (12.9) | 20 | 35416303 | 0.0224 | 0.0188 | 1.80 (0.99–3.26) |
|
| rs5761368 | 2 | A ( 9.4) | 22 | 19607471 | 0.0281 | 0.0344 | 2.00 (1.01–3.96) |
|
| rs4255740 | 6 | T (35.3) | 15 | 64559061 | 0.0432 | 0.0426 | 0.58 (0.35–0.98) |
| rs16949924 | C (35.3) | 64514651 | 0.0432 | 0.0426 | 0.58 (0.35–0.98) | |||
|
| rs8064892 | 6 | C (14.7) | 17 | 1283132 | 0.0477 | 0.0602 | 0.51 (0.24–1.07) |
| rs8073032 | C (14.7) | 1283157 | 0.0477 | 0.0602 | 0.51 (0.24–1.07) |
Total number of selected SNPs within each candidate gene.
Minor allele frequency among controls.
Chromosome number.
Raw p-values calculated in the trend model with a cut-off level ≤0.01.
100,000 permutations for single SNP in the trend model.
Adjusted for age, smoking (never vs. ever), H. pylori infection (positive vs. negative) and CagA seropositivity (positive vs. negative).
Seven representative SNPs with a raw or permutated p value<0.02 identified in the discovery phase were analyzed in the extension phase.
Excluded due to a SNP call rate <95%.
*All BH-FDR p-values were not significant (p>0.05).
Association between representative SNPs and gastric cancer risk in 479 gastric cancer cases and 445 controls.
| Discovery phase | Extension phase | Total gastric cancer cases | ||||||
| GENE | SNP | MAF | OR (95% CI) | MAF | OR (95% CI) | MAF | OR (95% CI) | OR (95% CI) |
|
| rs5999749 | C ( 9.8) | 2.83 (1.42–5.65) | C (11.0) | 1.40 (1.04–1.89) | C (10.5) | 1.57 (1.20–2.07) | 1.56 (1.19–2.06) |
|
| rs4635002 | A (11.3) | 0.44 (0.18–1.07) | A (11.1) | 0.65 (0.44–0.94) | A (11.1) | 0.60 (0.42–0.84) | 0.61 (0.43–0.87) |
|
| rs7853122 | G (17.1) | 0.47 (0.24–0.94) | G (18.2) | 0.61 (0.46–0.81) | G (18.0) | 0.59 (0.45–0.77) | 0.59 (0.45–0.76) |
| rs10901081 | A (21.2) | 0.49 (0.27–0.91) | A (18.2) | 0.98 (0.75–1.27) | A (18.5) | 0.87 (0.68–1.10) | 0.88 (0.69–1.12) | |
|
| rs530801 | A (34.5) | 0.57 (0.35–0.94) | A (25.8) | 0.93 (0.73–1.19) | A (27.5) | 0.85 (0.68–1.05) | 0.85 (0.68–1.05) |
|
| rs747182 | G (12.9) | 1.80 (0.99–3.26) | G (16.7) | 1.05 (0.80–1.39) | G (16.0) | 1.17 (0.92–1.50) | 1.16 (0.90–1.48) |
Incidence gastric cancer case identified in December 2005 and their age-sex matched controls from the KMCC.
Newly identified and prevalent gastric cancer cases from the KMCC and newly enrolled gastric cancer cases from Chungnam University Hospital and Hanyang University GURI Hospital and their age-sex matched controls from the KMCC.
Minor allele frequency among controls.
Adjusted for age, smoking (never vs. ever), H. pylori infection (positive vs. negative)and CagA seropositivity (positive vs. negative).
Pooled analysis including all gastric cases and controls form each study dataset.
Meta analysis using fixed effect model for combined analysis.
*No heterogeneity across the phases (Cochran Q test, P-heterogeneity >0.05) except for rs10901081 (p = 0.040).
Figure 1CagA oncogenic effect via the ERK signal pathway.
The CagA interaction can stimulate the downstream signals in the ERK cascade linked to aberrant cellular functions that leads to gastric carcinogenesis. In this process, the genetic effects of ERK, Dock180 and C3G play critical roles equal to their protein activity levels at the cellular stage.