Literature DB >> 21691450

Multiclass discrimination of cervical precancers using Raman spectroscopy.

Elizabeth M Kanter1, Shovan Majumder, Elizabeth Vargis, Amy Robichaux-Viehoever, Gary J Kanter, Heidi Shappell, Howard W Jones, Anita Mahadevan-Jansen.   

Abstract

Raman spectroscopy has the potential to differentiate among the various stages leading to high-grade cervical cancer such as normal, squamous metaplasia, and low-grade cancer. For Raman spectroscopy to successfully differentiate among the stages, an applicable statistical method must be developed. Algorithms like linear discriminant analysis (LDA) are incapable of differentiating among three or more types of tissues. We developed a novel statistical method combining the method of maximum representation and discrimination feature (MRDF) to extract diagnostic information with sparse multinomial logistic regression (SMLR) to classify spectra based on nonlinear features for multiclass analysis of Raman spectra. We found that high-grade spectra classified correctly 95% of the time; low-grade data classified correctly 74% of the time, improving sensitivity from 92 to 98% and specificity from 81 to 96% suggesting that MRDF with SMLR is a more appropriate technique for categorizing Raman spectra. SMLR also outputs a posterior probability to evaluate the algorithm's accuracy. This combined method holds promise to diagnose subtle changes leading to cervical cancer.

Entities:  

Year:  2009        PMID: 21691450      PMCID: PMC3117583          DOI: 10.1002/jrs.2108

Source DB:  PubMed          Journal:  J Raman Spectrosc        ISSN: 0377-0486            Impact factor:   3.133


  22 in total

Review 1.  Prospects for in vivo Raman spectroscopy.

Authors:  E B Hanlon; R Manoharan; T W Koo; K E Shafer; J T Motz; M Fitzmaurice; J R Kramer; I Itzkan; R R Dasari; M S Feld
Journal:  Phys Med Biol       Date:  2000-02       Impact factor: 3.609

2.  Raman spectroscopy for early detection of laryngeal malignancy: preliminary results.

Authors:  N Stone; P Stavroulaki; C Kendall; M Birchall; H Barr
Journal:  Laryngoscope       Date:  2000-10       Impact factor: 3.325

3.  Classification of colonic tissues using near-infrared Raman spectroscopy and support vector machines.

Authors:  Effendi Widjaja; Wei Zheng; Zhiwei Huang
Journal:  Int J Oncol       Date:  2008-03       Impact factor: 5.650

4.  Raman spectroscopy for the detection of cancers and precancers.

Authors:  A Mahadevan-Jansen; R R Richards-Kortum
Journal:  J Biomed Opt       Date:  1996-01       Impact factor: 3.170

5.  Near-infrared Raman spectroscopy for in vitro detection of cervical precancers.

Authors:  A Mahadevan-Jansen; M F Mitchell; N Ramanujam; A Malpica; S Thomsen; U Utzinger; R Richards-Kortum
Journal:  Photochem Photobiol       Date:  1998-07       Impact factor: 3.421

6.  Cervical precancer detection using a multivariate statistical algorithm based on laser-induced fluorescence spectra at multiple excitation wavelengths.

Authors:  N Ramanujam; M F Mitchell; A Mahadevan-Jansen; S L Thomsen; G Staerkel; A Malpica; T Wright; N Atkinson; R Richards-Kortum
Journal:  Photochem Photobiol       Date:  1996-10       Impact factor: 3.421

7.  A probability-based multivariate statistical algorithm for autofluorescence spectroscopic identification of oral carcinogenesis.

Authors:  C Y Wang; C T Chen; C P Chiang; S T Young; S N Chow; H K Chiang
Journal:  Photochem Photobiol       Date:  1999-04       Impact factor: 3.421

8.  Setting the target for a better cervical screening test: characteristics of a cost-effective test for cervical neoplasia screening.

Authors:  E R Myers; D C McCrory; S Subramanian; N McCall; K Nanda; S Datta; D B Matchar
Journal:  Obstet Gynecol       Date:  2000-11       Impact factor: 7.661

9.  Cluster analysis and display of genome-wide expression patterns.

Authors:  M B Eisen; P T Spellman; P O Brown; D Botstein
Journal:  Proc Natl Acad Sci U S A       Date:  1998-12-08       Impact factor: 11.205

10.  A probability-based spectroscopic diagnostic algorithm for simultaneous discrimination of brain tumor and tumor margins from normal brain tissue.

Authors:  Shovan K Majumder; Steven Gebhart; Mahlon D Johnson; Reid Thompson; Wei-Chiang Lin; Anita Mahadevan-Jansen
Journal:  Appl Spectrosc       Date:  2007-05       Impact factor: 2.388

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  8 in total

1.  Effect of hormonal variation on Raman spectra for cervical disease detection.

Authors:  Elizabeth M Kanter; Shovan Majumder; Gary J Kanter; Emily M Woeste; Anita Mahadevan-Jansen
Journal:  Am J Obstet Gynecol       Date:  2009-02-23       Impact factor: 8.661

2.  Near-infrared Raman Microspectroscopy Detects High-risk Human Papillomaviruses.

Authors:  Elizabeth Vargis; Yi-Wei Tang; Dineo Khabele; Anita Mahadevan-Jansen
Journal:  Transl Oncol       Date:  2012-06-01       Impact factor: 4.243

3.  Application of Raman spectroscopy for cervical dysplasia diagnosis.

Authors:  Elizabeth M Kanter; Elizabeth Vargis; Shovan Majumder; Matthew D Keller; Emily Woeste; Gautam G Rao; Anita Mahadevan-Jansen
Journal:  J Biophotonics       Date:  2009-02       Impact factor: 3.207

4.  Label-free diagnostics and cancer surgery Raman spectra guidance for the human colon at different excitation wavelengths.

Authors:  Beata Brozek-Pluska; Krystian Miazek; Jacek Musiał; Radzislaw Kordek
Journal:  RSC Adv       Date:  2019-12-06       Impact factor: 4.036

Review 5.  Current Advances in the Application of Raman Spectroscopy for Molecular Diagnosis of Cervical Cancer.

Authors:  Inês Raquel Martins Ramos; Alison Malkin; Fiona Mary Lyng
Journal:  Biomed Res Int       Date:  2015-06-09       Impact factor: 3.411

Review 6.  Accuracy of Raman spectroscopy in differentiating brain tumor from normal brain tissue.

Authors:  Jing Zhang; Yimeng Fan; Min He; Xuelei Ma; Yanlin Song; Ming Liu; Jianguo Xu
Journal:  Oncotarget       Date:  2017-05-30

Review 7.  Optical techniques for cervical neoplasia detection.

Authors:  Tatiana Novikova
Journal:  Beilstein J Nanotechnol       Date:  2017-09-06       Impact factor: 3.649

8.  Zinc Phthalocyanine Photochemistry by Raman Imaging, Fluorescence Spectroscopy and Femtosecond Spectroscopy in Normal and Cancerous Human Colon Tissues and Single Cells.

Authors:  Beata Brozek-Pluska; Arkadiusz Jarota; Rafal Kania; Halina Abramczyk
Journal:  Molecules       Date:  2020-06-10       Impact factor: 4.411

  8 in total

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