Literature DB >> 17555625

A probability-based spectroscopic diagnostic algorithm for simultaneous discrimination of brain tumor and tumor margins from normal brain tissue.

Shovan K Majumder1, Steven Gebhart, Mahlon D Johnson, Reid Thompson, Wei-Chiang Lin, Anita Mahadevan-Jansen.   

Abstract

This paper reports the development of a probability-based spectroscopic diagnostic algorithm capable of simultaneously discriminating tumor core and tumor margins from normal human brain tissues. The algorithm uses a nonlinear method for feature extraction based on maximum representation and discrimination feature (MRDF) and a Bayesian method for classification based on sparse multinomial logistic regression (SMLR). Both the autofluorescence and the diffuse-reflectance spectra acquired in vivo from patients undergoing craniotomy or temporal lobectomy at the Vanderbilt University Medical Center were used to train and validate the algorithm. The classification accuracy was observed to be approximately 96%, 80%, and 97% for the tumor, tumor margin, and normal brain tissues, respectively, for the training data set and approximately 96%, 94%, and 100%, respectively, for the corresponding tissue types in an independent validation data set. The inherently multi-class nature of the algorithm facilitates a rapid and simultaneous classification of tissue spectra into various tissue categories without the need for a hierarchical multi-step binary classification scheme. Further, the probabilistic nature of the algorithm makes it possible to quantitatively assess the certainty of the classification and recheck the samples that are classified with higher relative uncertainty.

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Year:  2007        PMID: 17555625     DOI: 10.1366/000370207780807704

Source DB:  PubMed          Journal:  Appl Spectrosc        ISSN: 0003-7028            Impact factor:   2.388


  7 in total

1.  Fluorescence lifetime spectroscopy for guided therapy of brain tumors.

Authors:  Pramod V Butte; Adam N Mamelak; Miriam Nuno; Serguei I Bannykh; Keith L Black; Laura Marcu
Journal:  Neuroimage       Date:  2010-11-03       Impact factor: 6.556

2.  Combined fluorescence and reflectance spectroscopy for in vivo quantification of cancer biomarkers in low- and high-grade glioma surgery.

Authors:  Pablo A Valdés; Anthony Kim; Frederic Leblond; Olga M Conde; Brent T Harris; Keith D Paulsen; Brian C Wilson; David W Roberts
Journal:  J Biomed Opt       Date:  2011-11       Impact factor: 3.170

3.  Wide-field spectral imaging of human ovary autofluorescence and oncologic diagnosis via previously collected probe data.

Authors:  Timothy E Renkoski; Kenneth D Hatch; Urs Utzinger
Journal:  J Biomed Opt       Date:  2012-03       Impact factor: 3.170

4.  Multiclass discrimination of cervical precancers using Raman spectroscopy.

Authors:  Elizabeth M Kanter; Shovan Majumder; Elizabeth Vargis; Amy Robichaux-Viehoever; Gary J Kanter; Heidi Shappell; Howard W Jones; Anita Mahadevan-Jansen
Journal:  J Raman Spectrosc       Date:  2009-02       Impact factor: 3.133

5.  Effect of hormonal variation on Raman spectra for cervical disease detection.

Authors:  Elizabeth M Kanter; Shovan Majumder; Gary J Kanter; Emily M Woeste; Anita Mahadevan-Jansen
Journal:  Am J Obstet Gynecol       Date:  2009-02-23       Impact factor: 8.661

6.  Application of Raman spectroscopy for cervical dysplasia diagnosis.

Authors:  Elizabeth M Kanter; Elizabeth Vargis; Shovan Majumder; Matthew D Keller; Emily Woeste; Gautam G Rao; Anita Mahadevan-Jansen
Journal:  J Biophotonics       Date:  2009-02       Impact factor: 3.207

7.  In vivo nonmelanoma skin cancer diagnosis using Raman microspectroscopy.

Authors:  Chad A Lieber; Shovan K Majumder; Darrel L Ellis; D Dean Billheimer; Anita Mahadevan-Jansen
Journal:  Lasers Surg Med       Date:  2008-09       Impact factor: 4.025

  7 in total

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