Literature DB >> 21690724

Cycle kinetics, steady state thermodynamics and motors-a paradigm for living matter physics.

Hong Qian1.   

Abstract

An integration of the stochastic mathematical models for motor proteins with Hill's steady state thermodynamics yields a rather comprehensive theory for molecular motors as open systems in the nonequilibrium steady state. This theory, a natural extension of Gibbs' approach to isothermal molecular systems in equilibrium, is compared with other existing theories with dissipative structures and dynamics. The theory of molecular motors might be considered as an archetype for studying more complex open biological systems such as biochemical reaction networks inside living cells.

Year:  2005        PMID: 21690724     DOI: 10.1088/0953-8984/17/47/010

Source DB:  PubMed          Journal:  J Phys Condens Matter        ISSN: 0953-8984            Impact factor:   2.333


  16 in total

1.  Kinetic and mesoscopic non-equilibrium description of the Ca(2+) pump: a comparison.

Authors:  Anders Lervik; Dick Bedeaux; Signe Kjelstrup
Journal:  Eur Biophys J       Date:  2012-03-28       Impact factor: 1.733

2.  Emerging of Stochastic Dynamical Equalities and Steady State Thermodynamics from Darwinian Dynamics.

Authors:  P Ao
Journal:  Commun Theor Phys       Date:  2008-05-15       Impact factor: 1.968

Review 3.  Energy coupling mechanisms of MFS transporters.

Authors:  Xuejun C Zhang; Yan Zhao; Jie Heng; Daohua Jiang
Journal:  Protein Sci       Date:  2015-09-18       Impact factor: 6.725

4.  Thermodynamically feasible kinetic models of reaction networks.

Authors:  Michael Ederer; Ernst Dieter Gilles
Journal:  Biophys J       Date:  2007-01-05       Impact factor: 4.033

5.  Equivalence of two approaches for modeling ion permeation through a transmembrane channel with an internal binding site.

Authors:  Huan-Xiang Zhou
Journal:  J Chem Phys       Date:  2011-04-07       Impact factor: 3.488

6.  Hill's small systems nanothermodynamics: a simple macromolecular partition problem with a statistical perspective.

Authors:  Hong Qian
Journal:  J Biol Phys       Date:  2012-01-06       Impact factor: 1.365

7.  Efficient Multiscale Models of Polymer Assembly.

Authors:  Alvaro Ruiz-Martinez; Thomas M Bartol; Terrence J Sejnowski; Daniel M Tartakovsky
Journal:  Biophys J       Date:  2016-07-12       Impact factor: 4.033

8.  Global view of bionetwork dynamics: adaptive landscape.

Authors:  Ping Ao
Journal:  J Genet Genomics       Date:  2009-02       Impact factor: 4.275

9.  From DNA nanotechnology to synthetic biology.

Authors:  Ralf Jungmann; Stephan Renner; Friedrich C Simmel
Journal:  HFSP J       Date:  2008-03-19

Review 10.  Motor proteins and molecular motors: how to operate machines at the nanoscale.

Authors:  Anatoly B Kolomeisky
Journal:  J Phys Condens Matter       Date:  2013-10-07       Impact factor: 2.333

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