Literature DB >> 19404476

From DNA nanotechnology to synthetic biology.

Ralf Jungmann1, Stephan Renner, Friedrich C Simmel.   

Abstract

Attempts to construct artificial systems from biological molecules such as DNA and RNA by self-assembly are compatible with the recent development of synthetic biology. Genetic mechanisms can be used to produce or control artificial structures made from DNA and RNA, and these structures can in turn be used as artificial gene regulatory elements, in vitro as well as in vivo. Artificial biochemical circuits can be incorporated into cell-like reaction compartments, which opens up the possibility to operate them permanently out of equilibrium. In small systems, stochastic effects become noticeable and will have to be accounted for in the design of future systems.

Entities:  

Year:  2008        PMID: 19404476      PMCID: PMC2645571          DOI: 10.2976/1.2896331

Source DB:  PubMed          Journal:  HFSP J        ISSN: 1955-205X


  87 in total

Review 1.  Artificial cells: prospects for biotechnology.

Authors:  Andrew Pohorille; David Deamer
Journal:  Trends Biotechnol       Date:  2002-03       Impact factor: 19.536

2.  Parallel molecular computations of pairwise exclusive-or (XOR) using DNA "string tile" self-assembly.

Authors:  Hao Yan; Liping Feng; Thomas H LaBean; John H Reif
Journal:  J Am Chem Soc       Date:  2003-11-26       Impact factor: 15.419

Review 3.  MicroRNAs: small RNAs with a big role in gene regulation.

Authors:  Lin He; Gregory J Hannon
Journal:  Nat Rev Genet       Date:  2004-07       Impact factor: 53.242

Review 4.  Gene regulation by riboswitches.

Authors:  Maumita Mandal; Ronald R Breaker
Journal:  Nat Rev Mol Cell Biol       Date:  2004-06       Impact factor: 94.444

5.  Bottom-up Assembly of RNA Arrays and Superstructures as Potential Parts in Nanotechnology.

Authors:  Dan Shu; Wulf-Dieter Moll; Zhaoxiang Deng; Chengde Mao; Peixuan Guo
Journal:  Nano Lett       Date:  2004-09       Impact factor: 11.189

6.  From Never Born Proteins to Minimal Living Cells: two projects in synthetic biology.

Authors:  Pier Luigi Luisi; Cristiano Chiarabelli; Pasquale Stano
Journal:  Orig Life Evol Biosph       Date:  2006-12       Impact factor: 1.950

Review 7.  Forty years of in vitro evolution.

Authors:  Gerald F Joyce
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

Review 8.  DNA nanomachines.

Authors:  Jonathan Bath; Andrew J Turberfield
Journal:  Nat Nanotechnol       Date:  2007-05       Impact factor: 39.213

9.  A single-step photolithographic interface for cell-free gene expression and active biochips.

Authors:  Amnon Buxboim; Maya Bar-Dagan; Veronica Frydman; David Zbaida; Margherita Morpurgo; Roy Bar-Ziv
Journal:  Small       Date:  2007-03       Impact factor: 13.281

10.  DNA display II. Genetic manipulation of combinatorial chemistry libraries for small-molecule evolution.

Authors:  David R Halpin; Pehr B Harbury
Journal:  PLoS Biol       Date:  2004-06-22       Impact factor: 8.029

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  7 in total

1.  DNA as membrane-bound ligand-receptor pairs: duplex stability is tuned by intermembrane forces.

Authors:  Paul A Beales; T Kyle Vanderlick
Journal:  Biophys J       Date:  2009-02-18       Impact factor: 4.033

2.  Noise control for molecular computing.

Authors:  Tomislav Plesa; Konstantinos C Zygalakis; David F Anderson; Radek Erban
Journal:  J R Soc Interface       Date:  2018-07       Impact factor: 4.118

3.  Nanoparticles that communicate in vivo to amplify tumour targeting.

Authors:  Geoffrey von Maltzahn; Ji-Ho Park; Kevin Y Lin; Neetu Singh; Christian Schwöppe; Rolf Mesters; Wolfgang E Berdel; Erkki Ruoslahti; Michael J Sailor; Sangeeta N Bhatia
Journal:  Nat Mater       Date:  2011-06-19       Impact factor: 43.841

4.  Rationally designed logic integration of regulatory signals in mammalian cells.

Authors:  Madeleine Leisner; Leonidas Bleris; Jason Lohmueller; Zhen Xie; Yaakov Benenson
Journal:  Nat Nanotechnol       Date:  2010-07-11       Impact factor: 39.213

5.  Tracking the emergence of synthetic biology.

Authors:  Philip Shapira; Seokbeom Kwon; Jan Youtie
Journal:  Scientometrics       Date:  2017-07-01       Impact factor: 3.238

Review 6.  Nano-Synthetic Devices in Leishmaniasis: A Bioinformatics Approach.

Authors:  Milsee Mol; Dipali Kosey; Shailza Singh
Journal:  Front Immunol       Date:  2015-06-19       Impact factor: 7.561

Review 7.  Nanobiomotors of archaeal DNA repair machineries: current research status and application potential.

Authors:  Wenyuan Han; Yulong Shen; Qunxin She
Journal:  Cell Biosci       Date:  2014-06-25       Impact factor: 7.133

  7 in total

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