| Literature DB >> 21686175 |
Chibuike C Udenigwe1, Rotimi E Aluko.
Abstract
The contributions of individual amino acid residues or groups of amino acids to antioxidant activities of some food protein hydrolysates were investigated using partial least squares (PLS) regression method. PLS models were computed with amino acid composition and 3-z scale descriptors in the X-matrix and antioxidant activities of the samples in the Y-matrix; models were validated by cross-validation and permutation tests. Based on coefficients of the resulting models, it was observed that sulfur-containing (SCAA), acidic and hydrophobic amino acids had strong positive effects on scavenging of 2,2-diphenyl-1-picrylhydrazyl (DPPH) and H(2)O(2) radicals in addition to ferric reducing antioxidant power. For superoxide radicals, only lysine and leucine showed strong positive contributions while SCAA had strong negative contributions to scavenging by the protein hydrolysates. In contrast, positively-charged amino acids strongly contributed negatively to ferric reducing antioxidant power and scavenging of DPPH and H(2)O(2) radicals. Therefore, food protein hydrolysates containing appropriate amounts of amino acids with strong contribution properties could be potential candidates for use as potent antioxidant agents. We conclude that information presented in this work could support the development of low cost methods that will efficiently generate potent antioxidant peptide mixtures from food proteins without the need for costly peptide purification.Entities:
Keywords: amino acids; antioxidant prop1erties; chemometrics; free radicals; partial least square regression; reactive oxygen species
Mesh:
Substances:
Year: 2011 PMID: 21686175 PMCID: PMC3116181 DOI: 10.3390/ijms12053148
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Summary of the partial least square regression models using amino acid compositions (AA), groups of amino acids (gAA) and sums of 3-z amino acid scales (Σz) of the food protein hydrolysates. The multiple correlation coefficient (R2) estimates the model fit whereas the cross-validated correlation coefficient (Q2cv) indicates the models’ predictive powers.
| DPPH-scavenging | 16 | AA + gAA+ Σ | 1 | 0.407 | 0.327 | 0.241 | −0.096 |
| AA | 1 | 0.448 | 0.358 | 0.288 | −0.108 | ||
| gAA | 1 | 0.405 | 0.231 | 0.149 | −0.043 | ||
| Σ | 1 | 0.304 | 0.288 | 0.006 | −0.127 | ||
| Ferric reducing | 16 | AA + gAA + Σ | 1 | 0.647 | 0.604 | 0.166 | −0.208 |
| AA | 1 | 0.728 | 0.668 | 0.223 | −0.219 | ||
| gAA | 1 | 0.536 | 0.531 | 0.073 | −0.169 | ||
| H2O2-scavenging | 11 | AA + gAA+ Σ | 1 | 0.400 | 0.137 | 0.261 | −0.122 |
| AA | 1 | 0.467 | 0.136 | 0.314 | −0.109 | ||
| Σ | 1 | 0.340 | 0.232 | 0.088 | −0.008 | ||
| O2−-scavenging | 16 | AA + gAA + Σ | 1 | 0.394 | 0.179 | 0.212 | −0.063 |
| gAA | 2 | 0.602 | 0.142 | 0.166 | −0.223 | ||
N, number of observations used for PLS analysis;
X, X-variables (descriptors) in the validated PLS models;
A, number of significant components used in PLS modeling;
R2, multiple correlation coefficients;
Q2cv, cross-validation correlation coefficients;
Permutation test, R2cum and Q2cv intercepts were calculated by SIMCA-P software during model validation.
Figure 1.The t/u score plots of the partial least squares (PLS) models showing relationships between the antioxidant activity and amino acid descriptors (AA + gAA + Σz) of the food protein hydrolysates and peptide fractions; (A) DPPH radical scavenging; (B) ferric reducing antioxidant power (FRAP); (C) H2O2-scavenging, and (D) superoxide radical-scavenging.
Figure 2.Variable Importance for the Projection (VIP) of the 3-z scale models: (A) DPPH radical scavenging; (B) ferric reducing antioxidant power (FRAP); (C) H2O2-scavenging, and (D) superoxide radical-scavenging.
Figure 3.Coefficient plots of scaled and centered data of the partial least square regression models: (A) DPPH radical scavenging; (B) ferric reducing antioxidant power (FRAP); (C) H2O2-scavenging; and (D) superoxide radical-scavenging. The importance of a given X-variable is proportional to its distance (coefficient value) from the origin (zero). Above zero values indicate positive contributions while values less than zero indicate negative contributions.
Summary of contribution of amino acid compositions and properties to antioxidant activities of food protein hydrolysates based on partial least square regression coefficients and VIP plots of the AA + gAA + Σz models; strong contributors with VIP > 1.0 are shown in bold; (weak contributors with 1.0 > VIP > 0.5 are shown in brackets).
| DPPH radical scavenging | ||
| Ferric reducing | ||
| H2O2-scavenging | ||
| Superoxide radical scavenging |
HAA, Hydrophobic amino acids (Pro + Ala + Cys + Val + Met + Ile + Leu + Tyr + Phe + Trp);
Amino acids with ↑Σz (electronic property) include Cys > Pro > Asx > His > Trp;
Amino acids with ↓Σz (highly hydrophobic) include Phe > Trp > Ile > Leu > Val > Met > Tyr;
Amino acids with ↓Σz (lower side chain bulk/molecular size) include Gly > Val > Thr > Ala > Ile > Ser > Leu > Cys;
SCAA, sulfur-containing amino acids (Met + Cys);
AcAA, Acidic amino acids (Glx + Asx);
AAA, Aromatic amino acids (Phe + Tyr + Trp);
PCAA, positively charged amino acids (Lys + Arg + His).
The % amino acid (AA) composition of the food protein hydrolysates used as variables in the X-matrix for partial least square regression analysis.
| 1 | 11.39 | 3.68 | 4.63 | 20.06 | 4.00 | 4.29 | 4.47 | 1.32 | 4.66 | 1.81 | 3.84 | 6.75 | 3.45 | 4.60 | 2.78 | 2.97 | 14.07 | 1.23 |
| 2 | 9.49 | 3.60 | 4.73 | 15.18 | 3.19 | 3.23 | 4.91 | 0.29 | 5.67 | 1.94 | 4.15 | 9.91 | 4.78 | 7.68 | 2.61 | 3.19 | 13.87 | 1.58 |
| 3 | 11.70 | 3.77 | 4.79 | 19.31 | 4.04 | 3.93 | 4.77 | 0.66 | 5.26 | 2.03 | 4.16 | 7.26 | 3.50 | 5.01 | 2.47 | 2.94 | 12.96 | 1.44 |
| 4 | 12.79 | 4.01 | 4.69 | 22.71 | 4.23 | 4.54 | 4.30 | 1.26 | 4.45 | 1.85 | 3.98 | 5.15 | 3.06 | 3.21 | 2.47 | 2.56 | 13.60 | 1.16 |
| 5 | 12.70 | 4.00 | 4.47 | 22.87 | 4.89 | 4.71 | 4.12 | 1.58 | 4.24 | 1.80 | 3.90 | 4.82 | 3.62 | 2.85 | 2.49 | 2.51 | 13.31 | 1.11 |
| 6 | 13.79 | 3.60 | 6.20 | 13.92 | 5.15 | 3.76 | 5.01 | 0.24 | 5.63 | 0.91 | 5.43 | 9.91 | 3.87 | 7.41 | 1.61 | 6.10 | 6.83 | 0.68 |
| 7 | 13.94 | 3.89 | 6.63 | 17.12 | 2.33 | 3.52 | 5.54 | 0.18 | 5.23 | 0.70 | 4.13 | 8.70 | 2.77 | 3.97 | 2.49 | 9.07 | 9.79 | 0.00 |
| 8 | 10.63 | 3.86 | 5.71 | 14.78 | 6.47 | 5.00 | 4.30 | 0.39 | 4.45 | 1.70 | 4.04 | 6.68 | 5.33 | 7.76 | 3.28 | 7.35 | 8.00 | 0.27 |
| 9 | 12.59 | 3.34 | 6.19 | 13.75 | 5.14 | 3.96 | 5.03 | 0.39 | 4.13 | 0.87 | 6.71 | 9.95 | 7.15 | 8.73 | 1.90 | 4.26 | 5.15 | 0.74 |
| 10 | 10.85 | 3.11 | 4.41 | 12.87 | 5.42 | 4.66 | 3.44 | 0.38 | 5.82 | 1.07 | 5.85 | 14.57 | 5.09 | 12.03 | 1.81 | 3.31 | 3.97 | 1.36 |
| 11 | 11.04 | 3.22 | 3.82 | 6.64 | 8.05 | 3.26 | 3.62 | 0.29 | 7.68 | 0.68 | 9.13 | 19.48 | 2.44 | 16.44 | 0.63 | 1.20 | 1.22 | 1.16 |
| 12 | 15.09 | 4.43 | 5.16 | 20.30 | 5.16 | 4.12 | 5.47 | 0.41 | 4.77 | 1.07 | 4.99 | 10.16 | 3.41 | 6.81 | 1.05 | 3.40 | 3.12 | 1.06 |
| 13 | 11.23 | 3.42 | 3.96 | 22.14 | 5.78 | 3.83 | 4.31 | 0.26 | 4.28 | 0.88 | 3.23 | 6.55 | 4.12 | 4.50 | 3.55 | 8.03 | 9.32 | 0.63 |
| 14 | 9.86 | 3.59 | 5.73 | 10.81 | 4.56 | 3.47 | 4.62 | 0.13 | 3.64 | 0.96 | 3.21 | 8.22 | 3.21 | 6.20 | 3.76 | 16.38 | 10.19 | 1.46 |
| 15 | 8.12 | 2.68 | 3.72 | 9.47 | 2.37 | 3.87 | 4.18 | 0.12 | 2.66 | 0.51 | 2.25 | 8.92 | 5.61 | 4.86 | 4.22 | 11.79 | 24.50 | 0.14 |
| 16 | 6.61 | 1.74 | 4.24 | 9.04 | 2.93 | 2.00 | 2.48 | 0.11 | 2.02 | 0.21 | 2.14 | 6.64 | 3.48 | 2.24 | 4.26 | 16.76 | 30.18 | 2.93 |
GLX = glutamine + glutamate;
ASX = asparagines + aspartate.
Amino acid groups (gAA) present in food protein hydrolysates used as variables in the X-matrix for partial least square regression analysis.
| 1 | 3.13 | 19.82 | 36.13 | 31.45 | 9.28 |
| 2 | 2.22 | 19.67 | 44.10 | 24.67 | 14.05 |
| 3 | 2.70 | 18.37 | 38.14 | 31.00 | 9.95 |
| 4 | 3.11 | 18.62 | 32.64 | 35.50 | 7.42 |
| 5 | 3.39 | 18.31 | 32.95 | 35.56 | 7.58 |
| 6 | 1.15 | 14.54 | 44.24 | 27.71 | 11.96 |
| 7 | 0.88 | 21.35 | 33.55 | 31.06 | 6.74 |
| 8 | 2.09 | 18.63 | 41.39 | 25.41 | 13.36 |
| 9 | 1.26 | 11.31 | 48.84 | 26.34 | 16.62 |
| 10 | 1.45 | 9.09 | 55.03 | 23.72 | 18.48 |
| 11 | 0.97 | 3.05 | 68.97 | 17.68 | 20.04 |
| 12 | 1.48 | 7.58 | 43.32 | 35.39 | 11.28 |
| 13 | 1.14 | 20.90 | 34.53 | 33.37 | 9.24 |
| 14 | 1.09 | 30.33 | 36.21 | 20.67 | 10.88 |
| 15 | 0.63 | 40.51 | 31.63 | 17.59 | 10.62 |
| 16 | 0.33 | 51.19 | 25.18 | 15.65 | 8.65 |
SCAA, sulphur-containing amino acids (Met + Cys);
PCAA, positively charged amino acids (Lys + Arg + His);
HAA, Hydrophobic amino acids;
AcAA, Acidic amino acids (Glx + Asx);
AAA, Aromatic amino acids (Phe + Tyr + Trp).