Literature DB >> 21685884

Protein regulation: the statistical theory of allostery.

Michele Vendruscolo.   

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Year:  2011        PMID： 21685884     DOI： 10.1038/nchembio.603

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN： 1552-4450            Impact factor:   15.040


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  10 in total

1.  ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL.

Authors:  J MONOD; J WYMAN; J P CHANGEUX
Journal:  J Mol Biol       Date:  1965-05       Impact factor: 5.469

2.  Dynamics connect substrate recognition to catalysis in protein kinase A.

Authors:  Larry R Masterson; Cecilia Cheng; Tao Yu; Marco Tonelli; Alexandr Kornev; Susan S Taylor; Gianluigi Veglia
Journal:  Nat Chem Biol       Date:  2010-10-03       Impact factor: 15.040

Review 3.  New tools provide new insights in NMR studies of protein dynamics.

Authors:  Anthony Mittermaier; Lewis E Kay
Journal:  Science       Date:  2006-04-14       Impact factor: 47.728

4.  Protein structure determination from NMR chemical shifts.

Authors:  Andrea Cavalli; Xavier Salvatella; Christopher M Dobson; Michele Vendruscolo
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-29       Impact factor: 11.205

5.  Consistent blind protein structure generation from NMR chemical shift data.

Authors:  Yang Shen; Oliver Lange; Frank Delaglio; Paolo Rossi; James M Aramini; Gaohua Liu; Alexander Eletsky; Yibing Wu; Kiran K Singarapu; Alexander Lemak; Alexandr Ignatchenko; Cheryl H Arrowsmith; Thomas Szyperski; Gaetano T Montelione; David Baker; Ad Bax
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-07       Impact factor: 11.205

Review 6.  Allostery and cooperativity revisited.

Authors:  Qiang Cui; Martin Karplus
Journal:  Protein Sci       Date:  2008-06-17       Impact factor: 6.725

7.  Allosteric signal transmission in the nucleotide-binding domain of 70-kDa heat shock protein (Hsp70) molecular chaperones.

Authors:  Anastasia Zhuravleva; Lila M Gierasch
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-11       Impact factor: 11.205

Review 8.  NMR reveals novel mechanisms of protein activity regulation.

Authors:  Charalampos G Kalodimos
Journal:  Protein Sci       Date:  2011-04-08       Impact factor: 6.725

9.  Mapping allostery through the covariance analysis of NMR chemical shifts.

Authors:  Rajeevan Selvaratnam; Somenath Chowdhury; Bryan VanSchouwen; Giuseppe Melacini
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-28       Impact factor: 11.205

Review 10.  The role of dynamic conformational ensembles in biomolecular recognition.

Authors:  David D Boehr; Ruth Nussinov; Peter E Wright
Journal:  Nat Chem Biol       Date:  2009-11       Impact factor: 15.040
  10 in total
  11 in total

1.  Analysis of core-periphery organization in protein contact networks reveals groups of structurally and functionally critical residues.

Authors:  Arnold Emerson Isaac; Sitabhra Sinha
Journal:  J Biosci       Date:  2015-10       Impact factor: 1.826

2.  Signaling through dynamic linkers as revealed by PKA.

Authors:  Madoka Akimoto; Rajeevan Selvaratnam; E Tyler McNicholl; Geeta Verma; Susan S Taylor; Giuseppe Melacini
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-14       Impact factor: 11.205

Review 3.  Allosteric linkers in cAMP signalling.

Authors:  Madoka Akimoto; Kody Moleschi; Stephen Boulton; Bryan VanSchouwen; Rajeevan Selvaratnam; Susan S Taylor; Giuseppe Melacini
Journal:  Biochem Soc Trans       Date:  2014-02       Impact factor: 5.407

4.  Establishing the allosteric mechanism in CRISPR-Cas9.

Authors:  Łukasz Nierzwicki; Pablo Ricardo Arantes; Aakash Saha; Giulia Palermo
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2020-10-26

Review 5.  Allostery and binding cooperativity of the catalytic subunit of protein kinase A by NMR spectroscopy and molecular dynamics simulations.

Authors:  Larry R Masterson; Alessandro Cembran; Lei Shi; Gianluigi Veglia
Journal:  Adv Protein Chem Struct Biol       Date:  2012       Impact factor: 3.507

Review 6.  Emerging Methods and Applications to Decrypt Allostery in Proteins and Nucleic Acids.

Authors:  Pablo R Arantes; Amun C Patel; Giulia Palermo
Journal:  J Mol Biol       Date:  2022-02-28       Impact factor: 6.151

7.  Chromatin loops as allosteric modulators of enhancer-promoter interactions.

Authors:  Boryana Doyle; Geoffrey Fudenberg; Maxim Imakaev; Leonid A Mirny
Journal:  PLoS Comput Biol       Date:  2014-10-23       Impact factor: 4.475

8.  Enhanced specificity mutations perturb allosteric signaling in CRISPR-Cas9.

Authors:  Lukasz Nierzwicki; Kyle W East; Uriel N Morzan; Pablo R Arantes; Victor S Batista; George P Lisi; Giulia Palermo
Journal:  Elife       Date:  2021-12-15       Impact factor: 8.140

9.  Phosphorylation of the retinoic acid receptor alpha induces a mechanical allosteric regulation and changes in internal dynamics.

Authors:  Yassmine Chebaro; Ismail Amal; Natacha Rochel; Cécile Rochette-Egly; Roland H Stote; Annick Dejaegere
Journal:  PLoS Comput Biol       Date:  2013-04-18       Impact factor: 4.475

10.  A tool set to map allosteric networks through the NMR chemical shift covariance analysis.

Authors:  Stephen Boulton; Madoka Akimoto; Rajeevan Selvaratnam; Amir Bashiri; Giuseppe Melacini
Journal:  Sci Rep       Date:  2014-12-08       Impact factor: 4.379
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