Literature DB >> 21685275

Genome sequence of the Chlamydophila abortus variant strain LLG.

Michelle Sait1, Ewan M Clark, Nick Wheelhouse, Morag Livingstone, Lucy Spalding, Victoria I Siarkou, Evangelia Vretou, David G E Smith, F Alex Lainson, David Longbottom.   

Abstract

Chlamydophila abortus is a common cause of ruminant abortion. Here we report the genome sequence of strain LLG, which differs genotypically and phenotypically from the wild-type strain S26/3. Genome sequencing revealed differences between LLG and S26/3 to occur in pseudogene content, in transmembrane head/inc family proteins, and in biotin biosynthesis genes.

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Year:  2011        PMID： 21685275      PMCID： PMC3147691          DOI： 10.1128/JB.05290-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  11 in total

1.  Artemis: sequence visualization and annotation.

Authors:  K Rutherford; J Parkhill; J Crook; T Horsnell; P Rice; M A Rajandream; B Barrell
Journal:  Bioinformatics       Date:  2000-10       Impact factor: 6.937

2.  Subspecies variation in Greek strains of Chlamydophila abortus.

Authors:  Victoria Siarkou; Alexandros F Lambropoulos; Sofia Chrisafi; Alexandros Kotsis; Orestis Papadopoulos
Journal:  Vet Microbiol       Date:  2002-03-01       Impact factor: 3.293

Review 3.  Proteins in the chlamydial inclusion membrane.

Authors:  Daniel D Rockey; Marci A Scidmore; John P Bannantine; Wendy J Brown
Journal:  Microbes Infect       Date:  2002-03       Impact factor: 2.700

4.  The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation.

Authors:  Nicholas R Thomson; Corin Yeats; Kenneth Bell; Matthew T G Holden; Stephen D Bentley; Morag Livingstone; Ana M Cerdeño-Tárraga; Barbara Harris; Jon Doggett; Doug Ormond; Karen Mungall; Kay Clarke; Theresa Feltwell; Zahra Hance; Mandy Sanders; Michael A Quail; Claire Price; Bart G Barrell; Julian Parkhill; David Longbottom
Journal:  Genome Res       Date:  2005-04-18       Impact factor: 9.043

5.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

6.  Genome sequence of Chlamydophila caviae (Chlamydia psittaci GPIC): examining the role of niche-specific genes in the evolution of the Chlamydiaceae.

Authors:  T D Read; G S A Myers; R C Brunham; W C Nelson; I T Paulsen; J Heidelberg; E Holtzapple; H Khouri; N B Federova; H A Carty; L A Umayam; D H Haft; J Peterson; M J Beanan; O White; S L Salzberg; R-c Hsia; G McClarty; R G Rank; P M Bavoil; C M Fraser
Journal:  Nucleic Acids Res       Date:  2003-04-15       Impact factor: 16.971

7.  Diversity among abortion strains of Chlamydia psittaci demonstrated by inclusion morphology, polypeptide profiles and monoclonal antibodies.

Authors:  E Vretou; H Loutrari; L Mariani; K Costelidou; P Eliades; G Conidou; S Karamanou; O Mangana; V Siarkou; O Papadopoulos
Journal:  Vet Microbiol       Date:  1996-08       Impact factor: 3.293

8.  Abortive potency of Chlamydophila abortus in pregnant mice is not directly correlated with placental and fetal colonization levels.

Authors:  Amel Bouakane; Ilhem Benchaïeb; Annie Rodolakis
Journal:  Infect Immun       Date:  2003-12       Impact factor: 3.441

9.  Genotyping of Chlamydophila abortus strains by multilocus VNTR analysis.

Authors:  Karine Laroucau; Fabien Vorimore; Claire Bertin; Khalil Yousef Mohamad; Simon Thierry; Willems Hermann; Cyril Maingourd; Christine Pourcel; David Longbottom; Simone Magnino; Konrad Sachse; Evangelia Vretou; Annie Rodolakis
Journal:  Vet Microbiol       Date:  2009-01-24       Impact factor: 3.293

10.  Multi locus sequence typing of Chlamydia reveals an association between Chlamydia psittaci genotypes and host species.

Authors:  Yvonne Pannekoek; Veerle Dickx; Delphine S A Beeckman; Keith A Jolley; Wendy C Keijzers; Evangelia Vretou; Martin C J Maiden; Daisy Vanrompay; Arie van der Ende
Journal:  PLoS One       Date:  2010-12-02       Impact factor: 3.240
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  8 in total

1.  Uptake of biotin by Chlamydia Spp. through the use of a bacterial transporter (BioY) and a host-cell transporter (SMVT).

Authors:  Derek J Fisher; Reinaldo E Fernández; Nancy E Adams; Anthony T Maurelli
Journal:  PLoS One       Date:  2012-09-27       Impact factor: 3.240

2.  Diversification and Distribution of Ruminant Chlamydia abortus Clones Assessed by MLST and MLVA.

Authors:  Victoria I Siarkou; Fabien Vorimore; Nadia Vicari; Simone Magnino; Annie Rodolakis; Yvonne Pannekoek; Konrad Sachse; David Longbottom; Karine Laroucau
Journal:  PLoS One       Date:  2015-05-22       Impact factor: 3.240

3.  Molecular characterisation of the Chlamydia pecorum plasmid from porcine, ovine, bovine, and koala strains indicates plasmid-strain co-evolution.

Authors:  Martina Jelocnik; Nathan L Bachmann; Helena Seth-Smith; Nicholas R Thomson; Peter Timms; Adam M Polkinghorne
Journal:  PeerJ       Date:  2016-02-04       Impact factor: 2.984

4.  European Chlamydia abortus livestock isolate genomes reveal unusual stability and limited diversity, reflected in geographical signatures.

Authors:  H M B Seth-Smith; Leonor Sánchez Busó; M Livingstone; M Sait; S R Harris; K D Aitchison; Evangelia Vretou; V I Siarkou; K Laroucau; K Sachse; D Longbottom; N R Thomson
Journal:  BMC Genomics       Date:  2017-05-04       Impact factor: 3.969

5.  In silico functional elucidation of uncharacterized proteins of Chlamydia abortus strain LLG.

Authors:  Gagandeep Singh; Dixit Sharma; Vikram Singh; Jyoti Rani; Francessco Marotta; Manoj Kumar; Gorakh Mal; Birbal Singh
Journal:  Future Sci OA       Date:  2017-01-24

6.  Pathogenic outcome following experimental infection of sheep with Chlamydia abortus variant strains LLG and POS.

Authors:  Morag Livingstone; Nicholas Wheelhouse; Hannah Ensor; Mara Rocchi; Stephen Maley; Kevin Aitchison; Sean Wattegedera; Kim Wilson; Michelle Sait; Victoria Siarkou; Evangelia Vretou; Gary Entrican; Mark Dagleish; David Longbottom
Journal:  PLoS One       Date:  2017-05-11       Impact factor: 3.240

7.  Whole genome de novo sequencing and comparative genomic analyses suggests that Chlamydia psittaci strain 84/2334 should be reclassified as Chlamydia abortus species.

Authors:  David Longbottom; Morag Livingstone; Paolo Ribeca; Delphine Sylvie Anne Beeckman; Arie van der Ende; Yvonne Pannekoek; Daisy Vanrompay
Journal:  BMC Genomics       Date:  2021-03-06       Impact factor: 3.969

8.  Whole-Genome Sequence of Chlamydia abortus Strain GN6 Isolated from Aborted Yak Fetus.

Authors:  Zhaocai Li; Jinshan Cai; Xiaoan Cao; Zhongzi Lou; Yilin Chao; Wei Kan; Jizhang Zhou
Journal:  Genome Announc       Date:  2017-08-31
  8 in total

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