Literature DB >> 17702530

Investigations of the effects of gender, diurnal variation, and age in human urinary metabolomic profiles.

Carolyn M Slupsky1, Kathryn N Rankin, James Wagner, Hao Fu, David Chang, Aalim M Weljie, Erik J Saude, Bruce Lix, Darryl J Adamko, Sirish Shah, Russ Greiner, Brian D Sykes, Thomas J Marrie.   

Abstract

Metabolomics may have the capacity to revolutionize disease diagnosis through the identification of scores of metabolites that vary during environmental, pathogenic, or toxicological insult. NMR spectroscopy has become one of the main tools for measuring these changes since an NMR spectrum can accurately identify metabolites and their concentrations. The predominant approach in analyzing NMR data has been through the technique of spectral binning. However, identification of spectral areas in an NMR spectrum is insufficient for diagnostic evaluation, since it is unknown whether areas of interest are strictly caused by metabolic changes or are simply artifacts. In this paper, we explore differences in gender, diurnal variation, and age in a human population. We use the example of gender differences to compare traditional spectral binning techniques (NMR spectral areas) to novel targeted profiling techniques (metabolites and their concentrations). We show that targeted profiling produces robust models, generates accurate metabolite concentration data, and provides data that can be used to help understand metabolic differences in a healthy population. Metabolites relating to mitochondrial energy metabolism were found to differentiate gender and age. Dietary components and some metabolites related to circadian rhythms were found to differentiate time of day urine collection. The mechanisms by which these differences arise will be key to the discovery of new diagnostic tests and new understandings of the mechanism of disease.

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Year:  2007        PMID: 17702530     DOI: 10.1021/ac0708588

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  117 in total

1.  Serum metabolomic profiles suggest influence of sex and oral contraceptive use.

Authors:  Margherita Ruoppolo; Ilaria Campesi; Emanuela Scolamiero; Rita Pecce; Marianna Caterino; Sara Cherchi; Giuseppe Mercuro; Giancarlo Tonolo; Flavia Franconi
Journal:  Am J Transl Res       Date:  2014-10-11       Impact factor: 4.060

2.  The human circadian metabolome.

Authors:  Robert Dallmann; Antoine U Viola; Leila Tarokh; Christian Cajochen; Steven A Brown
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-31       Impact factor: 11.205

3.  Age, Sexual Dimorphism, and Disease Associations in the Developing Human Fetal Lung Transcriptome.

Authors:  Alvin T Kho; Divya Chhabra; Sunita Sharma; Weiliang Qiu; Vincent J Carey; Roger Gaedigk; Carrie A Vyhlidal; J Steven Leeder; Kelan G Tantisira; Scott T Weiss
Journal:  Am J Respir Cell Mol Biol       Date:  2016-06       Impact factor: 6.914

4.  Emerging Biomarkers of Illness Severity: Urinary Metabolites Associated with Sepsis and Necrotizing Methicillin-Resistant Staphylococcus aureus Pneumonia.

Authors:  Lilliam Ambroggio; Todd A Florin; Samir S Shah; Richard Ruddy; Larisa Yeomans; Julie Trexel; Kathleen A Stringer
Journal:  Pharmacotherapy       Date:  2017-07-28       Impact factor: 4.705

5.  The human milk metabolome reveals diverse oligosaccharide profiles.

Authors:  Jennifer T Smilowitz; Aifric O'Sullivan; Daniela Barile; J Bruce German; Bo Lönnerdal; Carolyn M Slupsky
Journal:  J Nutr       Date:  2013-09-11       Impact factor: 4.798

Review 6.  Metabolomics: moving to the clinic.

Authors:  Anders Nordström; Rolf Lewensohn
Journal:  J Neuroimmune Pharmacol       Date:  2009-04-28       Impact factor: 4.147

Review 7.  Analytical approaches to metabolomics and applications to systems biology.

Authors:  Jeffrey H Wang; Jaeman Byun; Subramaniam Pennathur
Journal:  Semin Nephrol       Date:  2010-09       Impact factor: 5.299

8.  Radiation metabolomics. 1. Identification of minimally invasive urine biomarkers for gamma-radiation exposure in mice.

Authors:  John B Tyburski; Andrew D Patterson; Kristopher W Krausz; Josef Slavík; Albert J Fornace; Frank J Gonzalez; Jeffrey R Idle
Journal:  Radiat Res       Date:  2008-07       Impact factor: 2.841

9.  1H NMR metabolomics study of age profiling in children.

Authors:  Haiwei Gu; Zhengzheng Pan; Bowei Xi; Bryan E Hainline; Narasimhamurthy Shanaiah; Vincent Asiago; G A Nagana Gowda; Daniel Raftery
Journal:  NMR Biomed       Date:  2009-10       Impact factor: 4.044

Review 10.  Opening up the "Black Box": metabolic phenotyping and metabolome-wide association studies in epidemiology.

Authors:  Magda Bictash; Timothy M Ebbels; Queenie Chan; Ruey Leng Loo; Ivan K S Yap; Ian J Brown; Maria de Iorio; Martha L Daviglus; Elaine Holmes; Jeremiah Stamler; Jeremy K Nicholson; Paul Elliott
Journal:  J Clin Epidemiol       Date:  2010-01-08       Impact factor: 6.437

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