Literature DB >> 21678908

S1-state model of the O2-evolving complex of photosystem II.

Sandra Luber1, Ivan Rivalta, Yasufumi Umena, Keisuke Kawakami, Jian-Ren Shen, Nobuo Kamiya, Gary W Brudvig, Victor S Batista.   

Abstract

We introduce a quantum mechanics/molecular mechanics model of the oxygen-evolving complex of photosystem II in the S(1) Mn(4)(IV,III,IV,III) state, where Ca(2+) is bridged to manganese centers by the carboxylate moieties of D170 and A344 on the basis of the new X-ray diffraction (XRD) model recently reported at 1.9 Å resolution. The model is also consistent with high-resolution spectroscopic data, including polarized extended X-ray absorption fine structure data of oriented single crystals. Our results provide refined intermetallic distances within the Mn cluster and suggest that the XRD model most likely corresponds to a mixture of oxidation states, including species more reduced than those observed in the catalytic cycle of water splitting.
© 2011 American Chemical Society

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Year:  2011        PMID: 21678908      PMCID: PMC3139771          DOI: 10.1021/bi200681q

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  21 in total

1.  Crystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.7-A resolution.

Authors:  Nobuo Kamiya; Jian-Ren Shen
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-23       Impact factor: 11.205

2.  Structural and oxidation state changes of the photosystem II manganese complex in four transitions of the water oxidation cycle (S0 --> S1, S1 --> S2, S2 --> S3, and S3,4 --> S0) characterized by X-ray absorption spectroscopy at 20 K and room temperature.

Authors:  M Haumann; C Müller; P Liebisch; L Iuzzolino; J Dittmer; M Grabolle; T Neisius; W Meyer-Klaucke; H Dau
Journal:  Biochemistry       Date:  2005-02-15       Impact factor: 3.162

3.  Where water is oxidized to dioxygen: structure of the photosynthetic Mn4Ca cluster.

Authors:  Junko Yano; Jan Kern; Kenneth Sauer; Matthew J Latimer; Yulia Pushkar; Jacek Biesiadka; Bernhard Loll; Wolfram Saenger; Johannes Messinger; Athina Zouni; Vittal K Yachandra
Journal:  Science       Date:  2006-11-03       Impact factor: 47.728

Review 4.  Water-splitting chemistry of photosystem II.

Authors:  James P McEvoy; Gary W Brudvig
Journal:  Chem Rev       Date:  2006-11       Impact factor: 60.622

5.  Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9 Å.

Authors:  Yasufumi Umena; Keisuke Kawakami; Jian-Ren Shen; Nobuo Kamiya
Journal:  Nature       Date:  2011-04-17       Impact factor: 49.962

6.  Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1988-01-15

7.  Density-functional approximation for the correlation energy of the inhomogeneous electron gas.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1986-06-15

8.  55Mn pulse ENDOR at 34 GHz of the S0 and S2 states of the oxygen-evolving complex in photosystem II.

Authors:  Leonid V Kulik; Boris Epel; Wolfgang Lubitz; Johannes Messinger
Journal:  J Am Chem Soc       Date:  2005-03-02       Impact factor: 15.419

Review 9.  Structure of the catalytic, inorganic core of oxygen-evolving photosystem II at 1.9 Å resolution.

Authors:  Keisuke Kawakami; Yasufumi Umena; Nobuo Kamiya; Jian-Ren Shen
Journal:  J Photochem Photobiol B       Date:  2011-04-15       Impact factor: 6.252

10.  Cyanobacterial photosystem II at 2.9-A resolution and the role of quinones, lipids, channels and chloride.

Authors:  Albert Guskov; Jan Kern; Azat Gabdulkhakov; Matthias Broser; Athina Zouni; Wolfram Saenger
Journal:  Nat Struct Mol Biol       Date:  2009-02-15       Impact factor: 15.369

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  29 in total

1.  Influence of the axial ligand on the cationic properties of the chlorophyll pair in photosystem II from Thermosynechococcus vulcanus.

Authors:  Keisuke Saito; Jian-Ren Shen; Hiroshi Ishikita
Journal:  Biophys J       Date:  2012-06-05       Impact factor: 4.033

2.  Structural changes of the oxygen-evolving complex in photosystem II during the catalytic cycle.

Authors:  Carina Glöckner; Jan Kern; Matthias Broser; Athina Zouni; Vittal Yachandra; Junko Yano
Journal:  J Biol Chem       Date:  2013-06-13       Impact factor: 5.157

3.  Entangled quantum electronic wavefunctions of the Mn₄CaO₅ cluster in photosystem II.

Authors:  Yuki Kurashige; Garnet Kin-Lic Chan; Takeshi Yanai
Journal:  Nat Chem       Date:  2013-06-09       Impact factor: 24.427

4.  Simulation of the isotropic EXAFS spectra for the S2 and S3 structures of the oxygen evolving complex in photosystem II.

Authors:  Xichen Li; Per E M Siegbahn; Ulf Ryde
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-16       Impact factor: 11.205

Review 5.  Molecular mechanisms for generating transmembrane proton gradients.

Authors:  M R Gunner; Muhamed Amin; Xuyu Zhu; Jianxun Lu
Journal:  Biochim Biophys Acta       Date:  2013-03-16

6.  Electrostatic effects on proton coupled electron transfer in oxomanganese complexes inspired by the oxygen-evolving complex of photosystem II.

Authors:  Muhamed Amin; Leslie Vogt; Serguei Vassiliev; Ivan Rivalta; Mohammad M Sultan; Doug Bruce; Gary W Brudvig; Victor S Batista; M R Gunner
Journal:  J Phys Chem B       Date:  2013-05-15       Impact factor: 2.991

Review 7.  The MOD-QM/MM Method: Applications to Studies of Photosystem II and DNA G-Quadruplexes.

Authors:  M Askerka; J Ho; E R Batista; J A Gascón; V S Batista
Journal:  Methods Enzymol       Date:  2016-07-15       Impact factor: 1.600

8.  Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser.

Authors:  Christopher Kupitz; Shibom Basu; Ingo Grotjohann; Raimund Fromme; Nadia A Zatsepin; Kimberly N Rendek; Mark S Hunter; Robert L Shoeman; Thomas A White; Dingjie Wang; Daniel James; Jay-How Yang; Danielle E Cobb; Brenda Reeder; Raymond G Sierra; Haiguang Liu; Anton Barty; Andrew L Aquila; Daniel Deponte; Richard A Kirian; Sadia Bari; Jesse J Bergkamp; Kenneth R Beyerlein; Michael J Bogan; Carl Caleman; Tzu-Chiao Chao; Chelsie E Conrad; Katherine M Davis; Holger Fleckenstein; Lorenzo Galli; Stefan P Hau-Riege; Stephan Kassemeyer; Hartawan Laksmono; Mengning Liang; Lukas Lomb; Stefano Marchesini; Andrew V Martin; Marc Messerschmidt; Despina Milathianaki; Karol Nass; Alexandra Ros; Shatabdi Roy-Chowdhury; Kevin Schmidt; Marvin Seibert; Jan Steinbrener; Francesco Stellato; Lifen Yan; Chunhong Yoon; Thomas A Moore; Ana L Moore; Yulia Pushkar; Garth J Williams; Sébastien Boutet; R Bruce Doak; Uwe Weierstall; Matthias Frank; Henry N Chapman; John C H Spence; Petra Fromme
Journal:  Nature       Date:  2014-07-09       Impact factor: 49.962

Review 9.  Artificial photosynthesis: understanding water splitting in nature.

Authors:  Nicholas Cox; Dimitrios A Pantazis; Frank Neese; Wolfgang Lubitz
Journal:  Interface Focus       Date:  2015-06-06       Impact factor: 3.906

10.  Synthetic cluster models of biological and heterogeneous manganese catalysts for O2 evolution.

Authors:  Emily Y Tsui; Jacob S Kanady; Theodor Agapie
Journal:  Inorg Chem       Date:  2013-12-16       Impact factor: 5.165

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