Literature DB >> 21676899

Transient protein-protein interactions.

Saliha Ece Acuner Ozbabacan1, Hatice Billur Engin, Attila Gursoy, Ozlem Keskin.   

Abstract

Transient complexes are crucial for diverse biological processes such as biochemical pathways and signaling cascades in the cell. Here, we give an overview of the transient interactions; the importance of transient interactions as drug targets; and the structural characterization of transient protein-protein complexes based on the geometrical and physicochemical features of the transient complexes' interfaces. To better understand and eventually design transient protein-protein interactions (TPPIs), a molecular perspective of the protein-protein interfaces is necessary. Obtaining high-quality structures of protein-protein interactions could be one way of achieving this goal. After introducing the association kinetics of TPPIs, we elaborate on the experimental techniques detecting TPPIs in combination with the computational methods which classify transient and/or non-obligate complexes. In this review, currently available databases and servers that can be used to identify and predict TPPIs are also compiled.

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Year:  2011        PMID: 21676899     DOI: 10.1093/protein/gzr025

Source DB:  PubMed          Journal:  Protein Eng Des Sel        ISSN: 1741-0126            Impact factor:   1.650


  78 in total

1.  Weak conservation of structural features in the interfaces of homologous transient protein-protein complexes.

Authors:  Govindarajan Sudha; Prashant Singh; Lakshmipuram S Swapna; Narayanaswamy Srinivasan
Journal:  Protein Sci       Date:  2015-09-08       Impact factor: 6.725

2.  Design Parameters for Granzyme-Mediated Cytotoxic Lymphocyte Target-Cell Killing and Specificity.

Authors:  Daniel J Woodsworth; Valentin Dunsing; Daniel Coombs
Journal:  Biophys J       Date:  2015-08-04       Impact factor: 4.033

Review 3.  Hydrogen-deuterium exchange mass spectrometry reveals folding and allostery in protein-protein interactions.

Authors:  Cesar A Ramirez-Sarmiento; Elizabeth A Komives
Journal:  Methods       Date:  2018-04-06       Impact factor: 3.608

4.  A two-component protease in Methylorubrum extorquens with high activity toward the peptide precursor of the redox cofactor pyrroloquinoline quinone.

Authors:  Ana M Martins; John A Latham; Paulo J Martel; Ian Barr; Anthony T Iavarone; Judith P Klinman
Journal:  J Biol Chem       Date:  2019-08-19       Impact factor: 5.157

Review 5.  Rule-based modeling: a computational approach for studying biomolecular site dynamics in cell signaling systems.

Authors:  Lily A Chylek; Leonard A Harris; Chang-Shung Tung; James R Faeder; Carlos F Lopez; William S Hlavacek
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2013-09-30

6.  Heterogeneous and Highly Dynamic Interface in Plastocyanin-Cytochrome f Complex Revealed by Site-Specific 2D-IR Spectroscopy.

Authors:  Sashary Ramos; Amanda L Le Sueur; Rachel E Horness; Jonathan T Specker; Jessica A Collins; Katherine E Thibodeau; Megan C Thielges
Journal:  J Phys Chem B       Date:  2019-02-21       Impact factor: 2.991

7.  Linking structural features of protein complexes and biological function.

Authors:  Gopichandran Sowmya; Edmond J Breen; Shoba Ranganathan
Journal:  Protein Sci       Date:  2015-07-14       Impact factor: 6.725

8.  Protein oligomerization as a metabolic control mechanism: Application to apoE.

Authors:  Carl Frieden
Journal:  Protein Sci       Date:  2019-02-18       Impact factor: 6.725

9.  The pre-mRNA splicing and transcription factor Tat-SF1 is a functional partner of the spliceosome SF3b1 subunit via a U2AF homology motif interface.

Authors:  Sarah Loerch; Justin R Leach; Steven W Horner; Debanjana Maji; Jermaine L Jenkins; Mary J Pulvino; Clara L Kielkopf
Journal:  J Biol Chem       Date:  2018-12-19       Impact factor: 5.157

10.  The three-dimensional structure of the biotin carboxylase-biotin carboxyl carrier protein complex of E. coli acetyl-CoA carboxylase.

Authors:  Tyler C Broussard; Matthew J Kobe; Svetlana Pakhomova; David B Neau; Amanda E Price; Tyler S Champion; Grover L Waldrop
Journal:  Structure       Date:  2013-03-14       Impact factor: 5.006

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