Literature DB >> 2167129

Solid-state 13C NMR study of tyrosine protonation in dark-adapted bacteriorhodopsin.

J Herzfeld1, S K Das Gupta, M R Farrar, G S Harbison, A E McDermott, S L Pelletier, D P Raleigh, S O Smith, C Winkel, J Lugtenburg.   

Abstract

Solid-state 13C MAS NMR spectra were obtained for dark-adapted bacteriorhodopsin (bR) labeled with [4'-13C]Tyr. Difference spectra (labeled minus natural abundance) taken at pH values between 2 and 12, and temperatures between 20 and -90 degrees C, exhibit a single signal centered at 156 ppm, indicating that the 11 tyrosines are protonated over a wide pH range. However, at pH 13, a second line appears in the spectrum with an isotropic shift of 165 ppm. Comparisons with solution and solid-state spectra of model compounds suggest that this second line is due to the formation of tyrosinate. Integrated intensities indicate that about half of the tyrosines are deprotonated at pH 13. This result demonstrates that deprotonated tyrosines in a membrane protein are detectable with solid-state NMR and that neither the bR568 nor the bR555 form of bR present in the dark-adapted state contains a tyrosinate at pH values between 2 and 12. Deprotonation of a single tyrosine in bR568 would account for 3.6% of the total tyrosine signal, which would be detectable with the current signal-to-noise ratio. We observe a slight heterogeneity and subtle line-width changes in the tyrosine signal between pH 7 and pH 12, which we interpret to be due to protein environmental effects (such as changes in hydrogen bonding) rather than complete deprotonation of tyrosine residue(s).

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Year:  1990        PMID: 2167129     DOI: 10.1021/bi00475a022

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  12 in total

1.  Coupling of retinal isomerization to the activation of rhodopsin.

Authors:  Ashish B Patel; Evan Crocker; Markus Eilers; Amiram Hirshfeld; Mordechai Sheves; Steven O Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-25       Impact factor: 11.205

Review 2.  NMR studies of retinal proteins.

Authors:  L Zheng; J Herzfeld
Journal:  J Bioenerg Biomembr       Date:  1992-04       Impact factor: 2.945

Review 3.  FTIR difference spectroscopy of bacteriorhodopsin: toward a molecular model.

Authors:  K J Rothschild
Journal:  J Bioenerg Biomembr       Date:  1992-04       Impact factor: 2.945

4.  Thermodynamic stability of water molecules in the bacteriorhodopsin proton channel: a molecular dynamics free energy perturbation study.

Authors:  B Roux; M Nina; R Pomès; J C Smith
Journal:  Biophys J       Date:  1996-08       Impact factor: 4.033

5.  The pH dependence of the subpicosecond retinal photoisomerization process in bacteriorhodopsin: evidence for parallel photocycles.

Authors:  L Song; S L Logunov; D Yang; M A el-Sayed
Journal:  Biophys J       Date:  1994-11       Impact factor: 4.033

6.  Nature of the chromophore binding site of bacteriorhodopsin: the potential role of Arg82 as a principal counterion.

Authors:  A Kusnetzow; D L Singh; C H Martin; I J Barani; R R Birge
Journal:  Biophys J       Date:  1999-05       Impact factor: 4.033

7.  Effects of individual genetic substitutions of arginine residues on the deprotonation and reprotonation kinetics of the Schiff base during the bacteriorhodopsin photocycle.

Authors:  G C Lin; M A el-Sayed; T Marti; L J Stern; T Mogi; H G Khorana
Journal:  Biophys J       Date:  1991-07       Impact factor: 4.033

8.  Redshift of the purple membrane absorption band and the deprotonation of tyrosine residues at high pH: Origin of the parallel photocycles of trans-bacteriorhodopsin.

Authors:  S P Balashov; R Govindjee; T G Ebrey
Journal:  Biophys J       Date:  1991-08       Impact factor: 4.033

9.  Structural transitions of transmembrane helix 6 in the formation of metarhodopsin I.

Authors:  Markus Eilers; Joseph A Goncalves; Shivani Ahuja; Colleen Kirkup; Amiram Hirshfeld; Carlos Simmerling; Philip J Reeves; Mordechai Sheves; Steven O Smith
Journal:  J Phys Chem B       Date:  2012-05-17       Impact factor: 2.991

10.  Helix movement is coupled to displacement of the second extracellular loop in rhodopsin activation.

Authors:  Shivani Ahuja; Viktor Hornak; Elsa C Y Yan; Natalie Syrett; Joseph A Goncalves; Amiram Hirshfeld; Martine Ziliox; Thomas P Sakmar; Mordechai Sheves; Philip J Reeves; Steven O Smith; Markus Eilers
Journal:  Nat Struct Mol Biol       Date:  2009-02-01       Impact factor: 15.369

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