Literature DB >> 21669805

New resources inform study of genome size, content, and organization in nonavian reptiles.

Daniel E Janes1, Christopher Organ, Nicole Valenzuela.   

Abstract

Genomic resources for studies of nonavian reptiles have recently improved and will reach a new level of access once the genomes of the painted turtle (Chrysemys picta) and the green anole (Anolis carolinensis) have been published. Eleven speakers gathered for a symposium on reptilian genomics and evolutionary genetics at the 2008 meeting of the Society for Integrative and Comparative Biology in San Antonio, Texas. Presentations described results of reptilian genetic studies concerning molecular evolution, chromosomal evolution, genomic architecture, population dynamics, endocrinology and endocrine disruption, and the evolution of developmental mechanisms. The presented studies took advantage of the recent generation of genetic and genomic tools and resources. Novel findings demonstrated the positive impact made by the improved availability of resources like genome annotations and bacterial artificial chromosomes (BACs). The symposium was timely and important because it provided a vehicle for the dissemination of novel findings that advance the field. Moreover, this meeting fostered the synergistic interaction of the participants as a group, which is anticipated to encourage the funding and creation of further resources such as additional BAC libraries and genomic projects. Novel data have already been collected and studies like those presented in this symposium promise to shape and improve our understanding of overall amniote evolution. Additional reptilian taxa such as the American alligator (Alligator mississippiensis), tuatara (Sphenodon punctatus), and garter snake (Thamnophis sirtalis) should be the foci of future genomic projects. We hope that the following articles in this volume will help promote these efforts by describing the conclusions and the potential that the improvement of genomic resources for nonavian reptiles can continue having in this important area of integrative and comparative biology.

Entities:  

Year:  2008        PMID: 21669805      PMCID: PMC4550109          DOI: 10.1093/icb/icn010

Source DB:  PubMed          Journal:  Integr Comp Biol        ISSN: 1540-7063            Impact factor:   3.326


  48 in total

Review 1.  Balancing the bipotential gonad between alternative organ fates: a new perspective on an old problem.

Authors:  Yuna Kim; Blanche Capel
Journal:  Dev Dyn       Date:  2006-09       Impact factor: 3.780

2.  Temperature sex reversal implies sex gene dosage in a reptile.

Authors:  Alexander E Quinn; Arthur Georges; Stephen D Sarre; Fiorenzo Guarino; Tariq Ezaz; Jennifer A Marshall Graves
Journal:  Science       Date:  2007-04-20       Impact factor: 47.728

3.  Extensive gross genomic rearrangements between chicken and Old World vultures (Falconiformes: Accipitridae).

Authors:  I Nanda; E Karl; V Volobouev; D K Griffin; M Schartl; M Schmid
Journal:  Cytogenet Genome Res       Date:  2006       Impact factor: 1.636

4.  Adrenal-kidney-gonad complex measurements may not predict gonad-specific changes in gene expression patterns during temperature-dependent sex determination in the red-eared slider turtle (Trachemys scripta elegans).

Authors:  Mary Ramsey; David Crews
Journal:  J Exp Zool A Ecol Genet Physiol       Date:  2007-08-01

5.  Alligator aromatase cDNA sequence and its expression in embryos at male and female incubation temperatures.

Authors:  W N Gabriel; B Blumberg; S Sutton; A R Place; V A Lance
Journal:  J Exp Zool       Date:  2001-09-15

6.  Colocalization of WT1 and cell proliferation reveals conserved mechanisms in temperature-dependent sex determination.

Authors:  Jennifer Schmahl; Humphrey H Yao; Fernando Pierucci-Alves; Blanche Capel
Journal:  Genesis       Date:  2003-04       Impact factor: 2.487

7.  Bird and mammal sex-chromosome orthologs map to the same autosomal region in a salamander (ambystoma).

Authors:  Jeramiah J Smith; S Randal Voss
Journal:  Genetics       Date:  2007-07-29       Impact factor: 4.562

8.  Temperature-related birth sex ratio bias in historical Sami: warm years bring more sons.

Authors:  Samuli Helle; Samuli Helama; Jukka Jokela
Journal:  Biol Lett       Date:  2008-02-23       Impact factor: 3.703

9.  Expression of putative sex-determining genes during the thermosensitive period of gonad development in the snapping turtle, Chelydra serpentina.

Authors:  T Rhen; K Metzger; A Schroeder; R Woodward
Journal:  Sex Dev       Date:  2007       Impact factor: 1.824

10.  Reduced variation on the chicken Z chromosome.

Authors:  Hannah Sundström; Matthew T Webster; Hans Ellegren
Journal:  Genetics       Date:  2004-05       Impact factor: 4.562

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  8 in total

Review 1.  Variability in sex-determining mechanisms influences genome complexity in reptilia.

Authors:  D E Janes; C L Organ; S V Edwards
Journal:  Cytogenet Genome Res       Date:  2010-03-04       Impact factor: 1.636

2.  Putative Independent Evolutionary Reversals from Genotypic to Temperature-Dependent Sex Determination are Associated with Accelerated Evolution of Sex-Determining Genes in Turtles.

Authors:  Robert Literman; Alexandria Burrett; Basanta Bista; Nicole Valenzuela
Journal:  J Mol Evol       Date:  2017-12-01       Impact factor: 2.395

3.  De novo sequence assembly and characterisation of a partial transcriptome for an evolutionarily distinct reptile, the tuatara (Sphenodon punctatus).

Authors:  Hilary C Miller; Patrick J Biggs; Claudia Voelckel; Nicola J Nelson
Journal:  BMC Genomics       Date:  2012-08-31       Impact factor: 3.969

4.  The Anolis lizard genome: an amniote genome without isochores.

Authors:  Matthew K Fujita; Scott V Edwards; Chris P Ponting
Journal:  Genome Biol Evol       Date:  2011-07-27       Impact factor: 3.416

5.  Physical Mapping and Refinement of the Painted Turtle Genome (Chrysemys picta) Inform Amniote Genome Evolution and Challenge Turtle-Bird Chromosomal Conservation.

Authors:  Daleen Badenhorst; LaDeana W Hillier; Robert Literman; Eugenia Elisabet Montiel; Srihari Radhakrishnan; Yingjia Shen; Patrick Minx; Daniel E Janes; Wesley C Warren; Scott V Edwards; Nicole Valenzuela
Journal:  Genome Biol Evol       Date:  2015-06-24       Impact factor: 3.416

6.  Major Histocompatibility Complex Genes Map to Two Chromosomes in an Evolutionarily Ancient Reptile, the Tuatara Sphenodon punctatus.

Authors:  Hilary C Miller; Denis O'Meally; Tariq Ezaz; Chris Amemiya; Jennifer A Marshall-Graves; Scott Edwards
Journal:  G3 (Bethesda)       Date:  2015-05-07       Impact factor: 3.154

7.  A genetic linkage map for the saltwater crocodile (Crocodylus porosus).

Authors:  Lee G Miles; Sally R Isberg; Travis C Glenn; Stacey L Lance; Pauline Dalzell; Peter C Thomson; Chris Moran
Journal:  BMC Genomics       Date:  2009-07-29       Impact factor: 3.969

8.  Karyotypic Evolution of Sauropsid Vertebrates Illuminated by Optical and Physical Mapping of the Painted Turtle and Slider Turtle Genomes.

Authors:  Ling Sze Lee; Beatriz M Navarro-Domínguez; Zhiqiang Wu; Eugenia E Montiel; Daleen Badenhorst; Basanta Bista; Thea B Gessler; Nicole Valenzuela
Journal:  Genes (Basel)       Date:  2020-08-12       Impact factor: 4.096

  8 in total

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