Literature DB >> 21669621

Species relationships in Lactuca s.l. (Lactuceae, Asteraceae) inferred from AFLP fingerprints.

W J Koopman1, M J Zevenbergen, R G Van den Berg.   

Abstract

An AFLP data set comprising 95 accessions from 20 species of Lactuca s.l. (sensu lato) and related genera was generated using the primer combinations E35/M48 and E35/M49. In phenetic analyses of a data subset, clustering with UPGMA based on Jaccard's similarity coefficient resulted in the highest cophenetic correlation, and the results were comparable to those of a principal coordinates analysis. In analyses of the total data set, phenetic and cladistic analyses showed similar tree topologies for the well-supported parts of the trees. The validity of cladistic analysis of AFLP data is discussed. The results do not support a distinction among the serriola-like species L. sativa, L. serriola, L. dregeana, and L. altaica, which is in line with previous results. Therefore, we postulate that these species are conspecific. The serriola-like species L. aculeata occupies a clearly separate position, making it an ideal outgroup for studies of the closest relatives of L. sativa. The subsect. Lactuca as a group is well supported by our data, but the positions of L. saligna and L. virosa relative to the serriola-like species remain unclear. The close relationship between the sect. Mulgedium species L. tatarica and L. sibirica is corroborated by the present AFLP results and by additional crossability data.

Entities:  

Year:  2001        PMID: 21669621

Source DB:  PubMed          Journal:  Am J Bot        ISSN: 0002-9122            Impact factor:   3.844


  23 in total

1.  Molecular analysis of Albizia species using AFLP markers for conservation strategies.

Authors:  Subbashree Aparajita; Gyana Ranjan Rout
Journal:  J Genet       Date:  2010-04       Impact factor: 1.166

2.  Genetic variation at AFLPs for the Dipterocarpaceae and its relation to molecular phylogenies and taxonomic subdivisions.

Authors:  Cui-Ping Cao; Oliver Gailing; Iskandar Siregar; Sapto Indrioko; Reiner Finkeldey
Journal:  J Plant Res       Date:  2006-08-19       Impact factor: 2.629

3.  A single domestication for potato based on multilocus amplified fragment length polymorphism genotyping.

Authors:  David M Spooner; Karen McLean; Gavin Ramsay; Robbie Waugh; Glenn J Bryan
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-03       Impact factor: 11.205

Review 4.  Amplified Fragment Length Polymorphism: Applications and Recent Developments.

Authors:  Thotten Elampilay Sheeja; Illathidath Payatatti Vijesh Kumar; Ananduchandra Giridhari; Divakaran Minoo; Muliyar Krishna Rajesh; Kantipudi Nirmal Babu
Journal:  Methods Mol Biol       Date:  2021

5.  Genetic relationships within Brassica rapa as inferred from AFLP fingerprints.

Authors:  Jianjun Zhao; Xiaowu Wang; Bo Deng; Ping Lou; Jian Wu; Rifei Sun; Zeyong Xu; Jaap Vromans; Maarten Koornneef; Guusje Bonnema
Journal:  Theor Appl Genet       Date:  2005-04-02       Impact factor: 5.699

6.  Phylogenetic relationships in the genus Leontopodium (Asteraceae: Gnaphalieae) based on AFLP data.

Authors:  Stefan Safer; Karin Tremetsberger; Yan-Ping Guo; Gudrun Kohl; Mary R Samuel; Tod F Stuessy; Hermann Stuppner
Journal:  Bot J Linn Soc       Date:  2011-04       Impact factor: 2.911

Review 7.  A brief review of molecular techniques to assess plant diversity.

Authors:  Ibrahim A Arif; Mohammad A Bakir; Haseeb A Khan; Ahmad H Al Farhan; Ali A Al Homaidan; Ali H Bahkali; Mohammad Al Sadoon; Mohammad Shobrak
Journal:  Int J Mol Sci       Date:  2010-05-10       Impact factor: 5.923

8.  Rin4 causes hybrid necrosis and race-specific resistance in an interspecific lettuce hybrid.

Authors:  Marieke J W Jeuken; Ningwen W Zhang; Leah K McHale; Koen Pelgrom; Erik den Boer; Pim Lindhout; Richard W Michelmore; Richard G F Visser; Rients E Niks
Journal:  Plant Cell       Date:  2009-10-23       Impact factor: 11.277

9.  Homoplasy corrected estimation of genetic similarity from AFLP bands, and the effect of the number of bands on the precision of estimation.

Authors:  Gerrit Gort; Theo van Hintum; Fred van Eeuwijk
Journal:  Theor Appl Genet       Date:  2009-05-13       Impact factor: 5.699

10.  Species delimitation and phylogeny of a New Zealand plant species radiation.

Authors:  Heidi M Meudt; Peter J Lockhart; David Bryant
Journal:  BMC Evol Biol       Date:  2009-05-20       Impact factor: 3.260

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