Literature DB >> 21666073

Genomic characterization of Neoparamoeba pemaquidensis (Amoebozoa) and its kinetoplastid endosymbiont.

Goro Tanifuji1, Eunsoo Kim, Naoko T Onodera, Rebecca Gibeault, Marlena Dlutek, Richard J Cawthorn, Ivan Fiala, Julius Lukes, Spencer J Greenwood, John M Archibald.   

Abstract

We have performed a genomic characterization of a kinetoplastid protist living within the amoebozoan Neoparamoeba pemaquidensis. The genome of this "Ichthyobodo-related organism" was found to be unexpectedly large, with at least 11 chromosomes between 1.0 and 3.5 Mbp and a total genome size of at least 25 Mbp.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21666073      PMCID: PMC3165438          DOI: 10.1128/EC.05027-11

Source DB:  PubMed          Journal:  Eukaryot Cell        ISSN: 1535-9786


  33 in total

Review 1.  The C-value enigma in plants and animals: a review of parallels and an appeal for partnership.

Authors:  T Ryan Gregory
Journal:  Ann Bot       Date:  2005-01       Impact factor: 4.357

2.  Comparative genomics of trypanosomatid parasitic protozoa.

Authors:  Najib M El-Sayed; Peter J Myler; Gaëlle Blandin; Matthew Berriman; Jonathan Crabtree; Gautam Aggarwal; Elisabet Caler; Hubert Renauld; Elizabeth A Worthey; Christiane Hertz-Fowler; Elodie Ghedin; Christopher Peacock; Daniella C Bartholomeu; Brian J Haas; Anh-Nhi Tran; Jennifer R Wortman; U Cecilia M Alsmark; Samuel Angiuoli; Atashi Anupama; Jonathan Badger; Frederic Bringaud; Eithon Cadag; Jane M Carlton; Gustavo C Cerqueira; Todd Creasy; Arthur L Delcher; Appolinaire Djikeng; T Martin Embley; Christopher Hauser; Alasdair C Ivens; Sarah K Kummerfeld; Jose B Pereira-Leal; Daniel Nilsson; Jeremy Peterson; Steven L Salzberg; Joshua Shallom; Joana C Silva; Jaideep Sundaram; Scott Westenberger; Owen White; Sara E Melville; John E Donelson; Björn Andersson; Kenneth D Stuart; Neil Hall
Journal:  Science       Date:  2005-07-15       Impact factor: 47.728

Review 3.  The evolution and diversity of kinetoplastid flagellates.

Authors:  Alastair G B Simpson; Jamie R Stevens; Julius Lukes
Journal:  Trends Parasitol       Date:  2006-02-28

4.  Neoparamoeba branchiphila n. sp., and related species of the genus Neoparamoeba Page, 1987: morphological and molecular characterization of selected strains.

Authors:  I Dyková; B F Nowak; P B B Crosbie; I Fiala; H Pecková; M B Adams; B Machácková; H Dvoráková
Journal:  J Fish Dis       Date:  2005-01       Impact factor: 2.767

5.  Diversity of secondary endosymbiont-derived actin-coding genes in cryptomonads and their evolutionary implications.

Authors:  Goro Tanifuji; Mayumi Erata; Ken-ichiro Ishida; Naoko Onodera; Yoshiaki Hara
Journal:  J Plant Res       Date:  2006-03-29       Impact factor: 2.629

6.  The genome of the kinetoplastid parasite, Leishmania major.

Authors:  Alasdair C Ivens; Christopher S Peacock; Elizabeth A Worthey; Lee Murphy; Gautam Aggarwal; Matthew Berriman; Ellen Sisk; Marie-Adele Rajandream; Ellen Adlem; Rita Aert; Atashi Anupama; Zina Apostolou; Philip Attipoe; Nathalie Bason; Christopher Bauser; Alfred Beck; Stephen M Beverley; Gabriella Bianchettin; Katja Borzym; Gordana Bothe; Carlo V Bruschi; Matt Collins; Eithon Cadag; Laura Ciarloni; Christine Clayton; Richard M R Coulson; Ann Cronin; Angela K Cruz; Robert M Davies; Javier De Gaudenzi; Deborah E Dobson; Andreas Duesterhoeft; Gholam Fazelina; Nigel Fosker; Alberto Carlos Frasch; Audrey Fraser; Monika Fuchs; Claudia Gabel; Arlette Goble; André Goffeau; David Harris; Christiane Hertz-Fowler; Helmut Hilbert; David Horn; Yiting Huang; Sven Klages; Andrew Knights; Michael Kube; Natasha Larke; Lyudmila Litvin; Angela Lord; Tin Louie; Marco Marra; David Masuy; Keith Matthews; Shulamit Michaeli; Jeremy C Mottram; Silke Müller-Auer; Heather Munden; Siri Nelson; Halina Norbertczak; Karen Oliver; Susan O'neil; Martin Pentony; Thomas M Pohl; Claire Price; Bénédicte Purnelle; Michael A Quail; Ester Rabbinowitsch; Richard Reinhardt; Michael Rieger; Joel Rinta; Johan Robben; Laura Robertson; Jeronimo C Ruiz; Simon Rutter; David Saunders; Melanie Schäfer; Jacquie Schein; David C Schwartz; Kathy Seeger; Amber Seyler; Sarah Sharp; Heesun Shin; Dhileep Sivam; Rob Squares; Steve Squares; Valentina Tosato; Christy Vogt; Guido Volckaert; Rolf Wambutt; Tim Warren; Holger Wedler; John Woodward; Shiguo Zhou; Wolfgang Zimmermann; Deborah F Smith; Jenefer M Blackwell; Kenneth D Stuart; Bart Barrell; Peter J Myler
Journal:  Science       Date:  2005-07-15       Impact factor: 47.728

7.  The genome of the African trypanosome Trypanosoma brucei.

Authors:  Matthew Berriman; Elodie Ghedin; Christiane Hertz-Fowler; Gaëlle Blandin; Hubert Renauld; Daniella C Bartholomeu; Nicola J Lennard; Elisabet Caler; Nancy E Hamlin; Brian Haas; Ulrike Böhme; Linda Hannick; Martin A Aslett; Joshua Shallom; Lucio Marcello; Lihua Hou; Bill Wickstead; U Cecilia M Alsmark; Claire Arrowsmith; Rebecca J Atkin; Andrew J Barron; Frederic Bringaud; Karen Brooks; Mark Carrington; Inna Cherevach; Tracey-Jane Chillingworth; Carol Churcher; Louise N Clark; Craig H Corton; Ann Cronin; Rob M Davies; Jonathon Doggett; Appolinaire Djikeng; Tamara Feldblyum; Mark C Field; Audrey Fraser; Ian Goodhead; Zahra Hance; David Harper; Barbara R Harris; Heidi Hauser; Jessica Hostetler; Al Ivens; Kay Jagels; David Johnson; Justin Johnson; Kristine Jones; Arnaud X Kerhornou; Hean Koo; Natasha Larke; Scott Landfear; Christopher Larkin; Vanessa Leech; Alexandra Line; Angela Lord; Annette Macleod; Paul J Mooney; Sharon Moule; David M A Martin; Gareth W Morgan; Karen Mungall; Halina Norbertczak; Doug Ormond; Grace Pai; Chris S Peacock; Jeremy Peterson; Michael A Quail; Ester Rabbinowitsch; Marie-Adele Rajandream; Chris Reitter; Steven L Salzberg; Mandy Sanders; Seth Schobel; Sarah Sharp; Mark Simmonds; Anjana J Simpson; Luke Tallon; C Michael R Turner; Andrew Tait; Adrian R Tivey; Susan Van Aken; Danielle Walker; David Wanless; Shiliang Wang; Brian White; Owen White; Sally Whitehead; John Woodward; Jennifer Wortman; Mark D Adams; T Martin Embley; Keith Gull; Elisabetta Ullu; J David Barry; Alan H Fairlamb; Fred Opperdoes; Barclay G Barrell; John E Donelson; Neil Hall; Claire M Fraser; Sara E Melville; Najib M El-Sayed
Journal:  Science       Date:  2005-07-15       Impact factor: 47.728

8.  Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.

Authors:  Evelyne Derelle; Conchita Ferraz; Stephane Rombauts; Pierre Rouzé; Alexandra Z Worden; Steven Robbens; Frédéric Partensky; Sven Degroeve; Sophie Echeynié; Richard Cooke; Yvan Saeys; Jan Wuyts; Kamel Jabbari; Chris Bowler; Olivier Panaud; Benoît Piégu; Steven G Ball; Jean-Philippe Ral; François-Yves Bouget; Gwenael Piganeau; Bernard De Baets; André Picard; Michel Delseny; Jacques Demaille; Yves Van de Peer; Hervé Moreau
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-25       Impact factor: 11.205

9.  U1 small nuclear RNA and spliceosomal introns in Euglena gracilis.

Authors:  D G Breckenridge; Y Watanabe; S J Greenwood; M W Gray; M N Schnare
Journal:  Proc Natl Acad Sci U S A       Date:  1999-02-02       Impact factor: 11.205

10.  The complete sequence of the smallest known nuclear genome from the microsporidian Encephalitozoon intestinalis.

Authors:  Nicolas Corradi; Jean-François Pombert; Laurent Farinelli; Elizabeth S Didier; Patrick J Keeling
Journal:  Nat Commun       Date:  2010-09-21       Impact factor: 14.919

View more
  11 in total

Review 1.  Trypanosome RNA editing: the complexity of getting U in and taking U out.

Authors:  Laurie K Read; Julius Lukeš; Hassan Hashimi
Journal:  Wiley Interdiscip Rev RNA       Date:  2015-11-02       Impact factor: 9.957

2.  Phylogenomic study indicates widespread lateral gene transfer in Entamoeba and suggests a past intimate relationship with parabasalids.

Authors:  Jessica R Grant; Laura A Katz
Journal:  Genome Biol Evol       Date:  2014-09       Impact factor: 3.416

3.  Gene Loss and Error-Prone RNA Editing in the Mitochondrion of Perkinsela, an Endosymbiotic Kinetoplastid.

Authors:  Vojtěch David; Pavel Flegontov; Evgeny Gerasimov; Goro Tanifuji; Hassan Hashimi; Maria D Logacheva; Shinichiro Maruyama; Naoko T Onodera; Michael W Gray; John M Archibald; Julius Lukeš
Journal:  mBio       Date:  2015-12-01       Impact factor: 7.867

Review 4.  The unconventional kinetoplastid kinetochore: from discovery toward functional understanding.

Authors:  Bungo Akiyoshi
Journal:  Biochem Soc Trans       Date:  2016-10-15       Impact factor: 5.407

5.  Genome sequencing reveals metabolic and cellular interdependence in an amoeba-kinetoplastid symbiosis.

Authors:  Goro Tanifuji; Ugo Cenci; Daniel Moog; Samuel Dean; Takuro Nakayama; Vojtěch David; Ivan Fiala; Bruce A Curtis; Shannon J Sibbald; Naoko T Onodera; Morgan Colp; Pavel Flegontov; Jessica Johnson-MacKinnon; Michael McPhee; Yuji Inagaki; Tetsuo Hashimoto; Steven Kelly; Keith Gull; Julius Lukeš; John M Archibald
Journal:  Sci Rep       Date:  2017-09-15       Impact factor: 4.379

6.  PhyloToL: A Taxon/Gene-Rich Phylogenomic Pipeline to Explore Genome Evolution of Diverse Eukaryotes.

Authors:  Mario A Cerón-Romero; Xyrus X Maurer-Alcalá; Jean-David Grattepanche; Ying Yan; Miguel M Fonseca; L A Katz
Journal:  Mol Biol Evol       Date:  2019-08-01       Impact factor: 16.240

7.  Free-living ciliates as potential reservoirs for eukaryotic parasites: occurrence of a trypanosomatid in the macronucleus of Euplotes encysticus.

Authors:  Sergei I Fokin; Martina Schrallhammer; Carolina Chiellini; Franco Verni; Giulio Petroni
Journal:  Parasit Vectors       Date:  2014-04-28       Impact factor: 3.876

8.  Heme pathway evolution in kinetoplastid protists.

Authors:  Ugo Cenci; Daniel Moog; Bruce A Curtis; Goro Tanifuji; Laura Eme; Julius Lukeš; John M Archibald
Journal:  BMC Evol Biol       Date:  2016-05-18       Impact factor: 3.260

9.  Genome of Leptomonas pyrrhocoris: a high-quality reference for monoxenous trypanosomatids and new insights into evolution of Leishmania.

Authors:  Pavel Flegontov; Anzhelika Butenko; Sergei Firsov; Natalya Kraeva; Marek Eliáš; Mark C Field; Dmitry Filatov; Olga Flegontova; Evgeny S Gerasimov; Jana Hlaváčová; Aygul Ishemgulova; Andrew P Jackson; Steve Kelly; Alexei Y Kostygov; Maria D Logacheva; Dmitri A Maslov; Fred R Opperdoes; Amanda O'Reilly; Jovana Sádlová; Tereza Ševčíková; Divya Venkatesh; Čestmír Vlček; Petr Volf; Jan Votýpka; Kristína Záhonová; Vyacheslav Yurchenko; Julius Lukeš
Journal:  Sci Rep       Date:  2016-03-29       Impact factor: 4.379

10.  Massive mitochondrial DNA content in diplonemid and kinetoplastid protists.

Authors:  Julius Lukeš; Richard Wheeler; Dagmar Jirsová; Vojtěch David; John M Archibald
Journal:  IUBMB Life       Date:  2018-10-06       Impact factor: 3.885

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.