Literature DB >> 16332816

A broad-host-range, generalized transducing phage (SN-T) acquires 16S rRNA genes from different genera of bacteria.

Amy Beumer1, Jayne B Robinson.   

Abstract

Genomic analysis has revealed heterogeneity among bacterial 16S rRNA gene sequences within a single species; yet the cause(s) remains uncertain. Generalized transducing bacteriophages have recently gained recognition for their abundance as well as their ability to affect lateral gene transfer and to harbor bacterial 16S rRNA gene sequences. Here, we demonstrate the ability of broad-host-range, generalized transducing phages to acquire 16S rRNA genes and gene sequences. Using PCR and primers specific to conserved regions of the 16S rRNA gene, we have found that generalized transducing phages (D3112, UT1, and SN-T), but not specialized transducing phages (D3), acquired entire bacterial 16S rRNA genes. Furthermore, we show that the broad-host-range, generalized transducing phage SN-T is capable of acquiring the 16S rRNA gene from two different genera: Sphaerotilus natans, the host from which SN-T was originally isolated, and Pseudomonas aeruginosa. In sequential infections, SN-T harbored only 16S rRNA gene sequences of the final host as determined by restriction fragment length polymorphism analysis. The frequency of 16S rRNA gene sequences in SN-T populations was determined to be 1 x 10(-9) transductants/PFU. Our findings further implicate transduction in the horizontal transfer of 16S rRNA genes between different species or genera of bacteria.

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Year:  2005        PMID: 16332816      PMCID: PMC1317401          DOI: 10.1128/AEM.71.12.8301-8304.2005

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  18 in total

1.  Method for host-independent detection of generalized transducing bacteriophages in natural habitats.

Authors:  M Sander; H Schmieger
Journal:  Appl Environ Microbiol       Date:  2001-04       Impact factor: 4.792

2.  Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons.

Authors:  Silvia G Acinas; Luisa A Marcelino; Vanja Klepac-Ceraj; Martin F Polz
Journal:  J Bacteriol       Date:  2004-05       Impact factor: 3.490

3.  Prevalence of broad-host-range lytic bacteriophages of Sphaerotilus natans, Escherichia coli, and Pseudomonas aeruginosa.

Authors:  E C Jensen; H S Schrader; B Rieland; T L Thompson; K W Lee; K W Nickerson; T A Kokjohn
Journal:  Appl Environ Microbiol       Date:  1998-02       Impact factor: 4.792

4.  Microbial Evolution, Diversity, and Ecology: A Decade of Ribosomal RNA Analysis of Uncultivated Microorganisms

Authors: 
Journal:  Microb Ecol       Date:  1998-01       Impact factor: 4.552

5.  Genomic evidence for two functionally distinct gene classes.

Authors:  M C Rivera; R Jain; J E Moore; J A Lake
Journal:  Proc Natl Acad Sci U S A       Date:  1998-05-26       Impact factor: 11.205

6.  Attached growth of Sphaerotilus and mixed populations in a continuous-flow apparatus.

Authors:  F F Dias; N A Dondero; M S Finstein
Journal:  Appl Microbiol       Date:  1968-08

7.  Intraspecific variation in small-subunit rRNA sequences in GenBank: why single sequences may not adequately represent prokaryotic taxa.

Authors:  R A Clayton; G Sutton; P S Hinkle; C Bult; C Fields
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8.  Distinct types of rRNA operons exist in the genome of the actinomycete Thermomonospora chromogena and evidence for horizontal transfer of an entire rRNA operon.

Authors:  W H Yap; Z Zhang; Y Wang
Journal:  J Bacteriol       Date:  1999-09       Impact factor: 3.490

9.  Specific ribosomal DNA sequences from diverse environmental settings correlate with experimental contaminants.

Authors:  M A Tanner; B M Goebel; M A Dojka; N R Pace
Journal:  Appl Environ Microbiol       Date:  1998-08       Impact factor: 4.792

10.  Transduction of a freshwater microbial community by a new Pseudomonas aeruginosa generalized transducing phage, UT1.

Authors:  S Ripp; O A Ogunseitan; R V Miller
Journal:  Mol Ecol       Date:  1994-04       Impact factor: 6.185

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  30 in total

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2.  Extent and variation of phage-borne bacterial 16S rRNA gene sequences in wastewater environments.

Authors:  Antonio Del Casale; Paul V Flanagan; Michael J Larkin; Christopher C R Allen; Leonid A Kulakov
Journal:  Appl Environ Microbiol       Date:  2011-06-10       Impact factor: 4.792

3.  The structure of temperate phage-bacteria infection networks changes with the phylogenetic distance of the host bacteria.

Authors:  Carolin C Wendling; Henry Goehlich; Olivia Roth
Journal:  Biol Lett       Date:  2018-11-14       Impact factor: 3.703

4.  Prevalence of lysogeny among soil bacteria and presence of 16S rRNA and trzN genes in viral-community DNA.

Authors:  Dhritiman Ghosh; Krishnakali Roy; Kurt E Williamson; David C White; K Eric Wommack; Kerry L Sublette; Mark Radosevich
Journal:  Appl Environ Microbiol       Date:  2007-11-09       Impact factor: 4.792

5.  Acyl-homoserine lactones can induce virus production in lysogenic bacteria: an alternative paradigm for prophage induction.

Authors:  Dhritiman Ghosh; Krishnakali Roy; Kurt E Williamson; Sharath Srinivasiah; K Eric Wommack; Mark Radosevich
Journal:  Appl Environ Microbiol       Date:  2009-09-25       Impact factor: 4.792

6.  Cargo capacity of phages and plasmids and other factors influencing horizontal transfers of prokaryote transposable elements.

Authors:  Sébastien Leclercq; Clément Gilbert; Richard Cordaux
Journal:  Mob Genet Elements       Date:  2012-03-01

7.  Reservoir of bacterial exotoxin genes in the environment.

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Journal:  Int J Microbiol       Date:  2011-01-09

Review 8.  The dynamic genetic repertoire of microbial communities.

Authors:  Paul Wilmes; Sheri L Simmons; Vincent J Denef; Jillian F Banfield
Journal:  FEMS Microbiol Rev       Date:  2008-11-24       Impact factor: 16.408

9.  Revisiting bacterial phylogeny: Natural and experimental evidence for horizontal gene transfer of 16S rRNA.

Authors:  Kei Kitahara; Kentaro Miyazaki
Journal:  Mob Genet Elements       Date:  2013-01-01

10.  Viruses in the desert: a metagenomic survey of viral communities in four perennial ponds of the Mauritanian Sahara.

Authors:  Laura Fancello; Sébatien Trape; Catherine Robert; Mickaël Boyer; Nikolay Popgeorgiev; Didier Raoult; Christelle Desnues
Journal:  ISME J       Date:  2012-10-04       Impact factor: 10.302

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