Literature DB >> 21665747

Morphometric analysis of pollen grains for paleoecological studies: classification of Picea from eastern North America.

Matts Lindbladh1, Raymond O'Connor, George L Jacobson.   

Abstract

Little is known about the paleoecological histories of the three spruce species (white spruce, Picea glauca; black spruce, P. mariana; and red spruce P. rubens) in eastern North America, largely because of the difficulty of separating the three species in the pollen record. We describe a novel and effective classification method of distinguishing pollen grains on the basis of quantitative analysis of grain attributes. The method is illustrated by an analysis of a large sample of modern pollen grains (522 grains from 38 collections) of the three Picea species, collected from the region where the three species co-occur today. For each species X we computed a binary regression tree that classified each grain either as X or as not-X; these three determinations for each grain were then combined as Hamming codes in an error/uncertainty detection procedure. The use of Hamming codes to link multiple binary trees for error detection allowed identification and exclusion of problematic specimens, with correspondingly greater classification certainty among the remaining grains. We measured 13 attributes of 419 reference grains of the three species to construct the regression trees and classified 103 other reference grains by testing. Species-specific accuracies among the reliably classified grains were 100, 77, and 76% for P. glauca, P. mariana, and P. rubens, respectively, and 21, 30, and 22% of the grains by species, respectively, were problematic. The method is applicable to any multi-species classification problem for which a large reference sample is available.

Entities:  

Year:  2002        PMID: 21665747     DOI: 10.3732/ajb.89.9.1459

Source DB:  PubMed          Journal:  Am J Bot        ISSN: 0002-9122            Impact factor:   3.844


  6 in total

1.  Why should we investigate the morphological disparity of plant clades?

Authors:  Jack W Oyston; Martin Hughes; Sylvain Gerber; Matthew A Wills
Journal:  Ann Bot       Date:  2015-12-09       Impact factor: 4.357

2.  Visual Recognition Software for Binary Classification and Its Application to Spruce Pollen Identification.

Authors:  David K Tcheng; Ashwin K Nayak; Charless C Fowlkes; Surangi W Punyasena
Journal:  PLoS One       Date:  2016-02-11       Impact factor: 3.240

3.  Divide and conquer! Data-mining tools and sequential multivariate analysis to search for diagnostic morphological characters within a plant polyploid complex (Veronica subsect. Pentasepalae, Plantaginaceae).

Authors:  Noemí López-González; Santiago Andrés-Sánchez; Blanca M Rojas-Andrés; M Montserrat Martínez-Ortega
Journal:  PLoS One       Date:  2018-06-29       Impact factor: 3.240

4.  Chemical characterization and identification of Pinaceae pollen by infrared microspectroscopy.

Authors:  Boris Zimmermann
Journal:  Planta       Date:  2017-09-14       Impact factor: 4.116

5.  A continuous morphological approach to study the evolution of pollen in a phylogenetic context: An example with the order Myrtales.

Authors:  Ricardo Kriebel; Mohammad Khabbazian; Kenneth J Sytsma
Journal:  PLoS One       Date:  2017-12-06       Impact factor: 3.240

6.  Chemical Analysis of Pollen by FT-Raman and FTIR Spectroscopies.

Authors:  Adriana Kenđel; Boris Zimmermann
Journal:  Front Plant Sci       Date:  2020-03-31       Impact factor: 5.753

  6 in total

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