Literature DB >> 21660126

Efficient Classification-Based Relabeling in Mixture Models.

Andrew J Cron1, Mike West.   

Abstract

Effective component relabeling in Bayesian analyses of mixture models is critical to the routine use of mixtures in classification with analysis based on Markov chain Monte Carlo methods. The classification-based relabeling approach here is computationally attractive and statistically effective, and scales well with sample size and number of mixture components concordant with enabling routine analyses of increasingly large data sets. Building on the best of existing methods, practical relabeling aims to match data:component classification indicators in MCMC iterates with those of a defined reference mixture distribution. The method performs as well as or better than existing methods in small dimensional problems, while being practically superior in problems with larger data sets as the approach is scalable. We describe examples and computational benchmarks, and provide supporting code with efficient computational implementation of the algorithm that will be of use to others in practical applications of mixture models.

Entities:  

Year:  2011        PMID: 21660126      PMCID: PMC3110018          DOI: 10.1198/tast.2011.10170

Source DB:  PubMed          Journal:  Am Stat        ISSN: 0003-1305            Impact factor:   8.710


  5 in total

1.  Spatial Mixture Modelling for Unobserved Point Processes: Examples in Immunofluorescence Histology.

Authors:  Chunlin Ji; Daniel Merl; Thomas B Kepler; Mike West
Journal:  Bayesian Anal       Date:  2009-12-04       Impact factor: 3.728

2.  Understanding GPU Programming for Statistical Computation: Studies in Massively Parallel Massive Mixtures.

Authors:  Marc A Suchard; Quanli Wang; Cliburn Chan; Jacob Frelinger; Andrew Cron; Mike West
Journal:  J Comput Graph Stat       Date:  2010-06-01       Impact factor: 2.302

3.  Mixture modeling approach to flow cytometry data.

Authors:  Michael J Boedigheimer; John Ferbas
Journal:  Cytometry A       Date:  2008-05       Impact factor: 4.355

4.  Selection Sampling from Large Data Sets for Targeted Inference in Mixture Modeling.

Authors:  Ioanna Manolopoulou; Cliburn Chan; Mike West
Journal:  Bayesian Anal       Date:  2010       Impact factor: 3.728

5.  Statistical mixture modeling for cell subtype identification in flow cytometry.

Authors:  Cliburn Chan; Feng Feng; Janet Ottinger; David Foster; Mike West; Thomas B Kepler
Journal:  Cytometry A       Date:  2008-08       Impact factor: 4.355

  5 in total
  7 in total

1.  Discriminative variable subsets in Bayesian classification with mixture models, with application in flow cytometry studies.

Authors:  Lin Lin; Cliburn Chan; Mike West
Journal:  Biostatistics       Date:  2015-06-03       Impact factor: 5.899

2.  Bayesian learning from marginal data in bionetwork models.

Authors:  Fernando V Bonassi; Lingchong You; Mike West
Journal:  Stat Appl Genet Mol Biol       Date:  2011-10-27

3.  A Bayesian spatial temporal mixtures approach to kinetic parametric images in dynamic positron emission tomography.

Authors:  W Zhu; J Ouyang; Y Rakvongthai; N J Guehl; D W Wooten; G El Fakhri; M D Normandin; Y Fan
Journal:  Med Phys       Date:  2016-03       Impact factor: 4.071

4.  GPU-powered Shotgun Stochastic Search for Dirichlet process mixtures of Gaussian Graphical Models.

Authors:  Chiranjit Mukherjee; Abel Rodriguez
Journal:  J Comput Graph Stat       Date:  2016-08-05       Impact factor: 2.302

5.  Hierarchical Bayesian mixture modelling for antigen-specific T-cell subtyping in combinatorially encoded flow cytometry studies.

Authors:  Lin Lin; Cliburn Chan; Sine R Hadrup; Thomas M Froesig; Quanli Wang; Mike West
Journal:  Stat Appl Genet Mol Biol       Date:  2013-06

6.  Hierarchical modeling for rare event detection and cell subset alignment across flow cytometry samples.

Authors:  Andrew Cron; Cécile Gouttefangeas; Jacob Frelinger; Lin Lin; Satwinder K Singh; Cedrik M Britten; Marij J P Welters; Sjoerd H van der Burg; Mike West; Cliburn Chan
Journal:  PLoS Comput Biol       Date:  2013-07-11       Impact factor: 4.475

7.  A non-parametric Bayesian model for joint cell clustering and cluster matching: identification of anomalous sample phenotypes with random effects.

Authors:  Murat Dundar; Ferit Akova; Halid Z Yerebakan; Bartek Rajwa
Journal:  BMC Bioinformatics       Date:  2014-09-24       Impact factor: 3.169

  7 in total

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