Literature DB >> 21651293

Solution NMR of polypeptides hyperpolarized by dynamic nuclear polarization.

Mukundan Ragavan1, Hsueh-Ying Chen, Giridhar Sekar, Christian Hilty.   

Abstract

Hyperpolarization of nuclear spins through techniques such as dynamic nuclear polarization (DNP) can greatly increase the signal-to-noise ratio in NMR measurements, thus eliminating the need for signal averaging. This enables the study of many dynamic processes which would otherwise not be amenable to study by NMR spectroscopy. A report of solid- to liquid-state DNP of a short peptide, bacitracin A, as well as of a full-length protein, L23, is presented here. The polypeptides are hyperpolarized at low temperature and dissolved for NMR signal acquisition in the liquid state in mixtures of organic solvent and water. Signal enhancements of 300-2000 are obtained in partially deuterated polypeptide when hyperpolarized on (13)C and of 30-180 when hyperpolarized on (1)H. A simulated spectrum is used to identify different resonances in the hyperpolarized (13)C spectra, and the relation between observed signal enhancement for various groups in the protein and relaxation parameters measured from the hyperpolarized samples is discussed. Thus far, solid- to liquid-state DNP has been used in conjunction with small molecules. The results presented here, however, demonstrate the feasibility of hyperpolarizing larger proteins, with potential applications toward the study of protein folding or macromolecular interactions.

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Year:  2011        PMID: 21651293     DOI: 10.1021/ac201122k

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  10 in total

1.  Laser- and cryogenic probe-assisted NMR enables hypersensitive analysis of biomolecules at submicromolar concentration.

Authors:  Yusuke Okuno; Miranda F Mecha; Hanming Yang; Lingchao Zhu; Charles G Fry; Silvia Cavagnero
Journal:  Proc Natl Acad Sci U S A       Date:  2019-05-29       Impact factor: 11.205

2.  Real-Time Analysis of Folding upon Binding of a Disordered Protein by Using Dissolution DNP NMR Spectroscopy.

Authors:  Mukundan Ragavan; Luigi I Iconaru; Cheon-Gil Park; Richard W Kriwacki; Christian Hilty
Journal:  Angew Chem Int Ed Engl       Date:  2017-05-16       Impact factor: 15.336

Review 3.  GPCR drug discovery: integrating solution NMR data with crystal and cryo-EM structures.

Authors:  Ichio Shimada; Takumi Ueda; Yutaka Kofuku; Matthew T Eddy; Kurt Wüthrich
Journal:  Nat Rev Drug Discov       Date:  2018-11-09       Impact factor: 84.694

4.  Interfacing Liquid State Hyperpolarization Methods with NMR Instrumentation.

Authors:  Pierce Pham; Ratnamala Mandal; Chang Qi; Christian Hilty
Journal:  J Magn Reson Open       Date:  2022-03-10

Review 5.  Chemistry and biochemistry of 13C hyperpolarized magnetic resonance using dynamic nuclear polarization.

Authors:  Kayvan R Keshari; David M Wilson
Journal:  Chem Soc Rev       Date:  2013-12-20       Impact factor: 54.564

6.  A 300-fold enhancement of imino nucleic acid resonances by hyperpolarized water provides a new window for probing RNA refolding by 1D and 2D NMR.

Authors:  Mihajlo Novakovic; Gregory L Olsen; György Pintér; Daniel Hymon; Boris Fürtig; Harald Schwalbe; Lucio Frydman
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-16       Impact factor: 11.205

Review 7.  Facing and Overcoming Sensitivity Challenges in Biomolecular NMR Spectroscopy.

Authors:  Jan-Henrik Ardenkjaer-Larsen; Gregory S Boebinger; Arnaud Comment; Simon Duckett; Arthur S Edison; Frank Engelke; Christian Griesinger; Robert G Griffin; Christian Hilty; Hidaeki Maeda; Giacomo Parigi; Thomas Prisner; Enrico Ravera; Jan van Bentum; Shimon Vega; Andrew Webb; Claudio Luchinat; Harald Schwalbe; Lucio Frydman
Journal:  Angew Chem Int Ed Engl       Date:  2015-07-01       Impact factor: 15.336

8.  On the potential of hyperpolarized water in biomolecular NMR studies.

Authors:  Talia Harris; Or Szekely; Lucio Frydman
Journal:  J Phys Chem B       Date:  2014-01-24       Impact factor: 2.991

9.  Assessing Site-Specific Enhancements Imparted by Hyperpolarized Water in Folded and Unfolded Proteins by 2D HMQC NMR.

Authors:  Or Szekely; Gregory Lars Olsen; Mihajlo Novakovic; Rina Rosenzweig; Lucio Frydman
Journal:  J Am Chem Soc       Date:  2020-05-12       Impact factor: 15.419

10.  Hyperpolarized Dihydroxyacetone Is a Sensitive Probe of Hepatic Gluconeogenic State.

Authors:  Mukundan Ragavan; Marc A McLeod; Anthony G Giacalone; Matthew E Merritt
Journal:  Metabolites       Date:  2021-07-05
  10 in total

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