Literature DB >> 21651236

MS analysis of nucleic acids in the post-genomic era.

D Fabris1.   

Abstract

Alternative approaches complementing the existing technologies for analysis of nucleic acids and their assemblies are necessary to take on the new challenges posed by the postgenomic era. The versatility of MS in biopolymer analysis and its ability to reach beyond sequence information are the basis of ever expanding applications aimed at the elucidation of nucleic acid structure-function relationships. This Feature summarizes the current state of MS-based approaches devised to overcome the limitations of traditional techniques and to advance different facets of nucleic acids research.

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Year:  2011        PMID: 21651236      PMCID: PMC3432857          DOI: 10.1021/ac200374y

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  40 in total

Review 1.  Analysis of noncovalent complexes of DNA and RNA by mass spectrometry.

Authors:  S A Hofstadler; R H Griffey
Journal:  Chem Rev       Date:  2001-02       Impact factor: 60.622

Review 2.  Analysis of protein-nucleic acid interactions by photochemical cross-linking and mass spectrometry.

Authors:  Hanno Steen; Ole Nørregaard Jensen
Journal:  Mass Spectrom Rev       Date:  2002 May-Jun       Impact factor: 10.946

3.  Identification of the mass-silent post-transcriptionally modified nucleoside pseudouridine in RNA by matrix-assisted laser desorption/ionization mass spectrometry.

Authors:  K G Patteson; L P Rodicio; P A Limbach
Journal:  Nucleic Acids Res       Date:  2001-05-15       Impact factor: 16.971

4.  DNA hairpin, pseudoknot, and cruciform stability in a solvent-free environment.

Authors:  Erin Shammel Baker; Nicholas F Dupuis; Michael T Bowers
Journal:  J Phys Chem B       Date:  2009-02-12       Impact factor: 2.991

5.  Collisional activation of protein complexes: picking up the pieces.

Authors:  Justin L P Benesch
Journal:  J Am Soc Mass Spectrom       Date:  2008-11-27       Impact factor: 3.109

Review 6.  Summary: the modified nucleosides of RNA.

Authors:  P A Limbach; P F Crain; J A McCloskey
Journal:  Nucleic Acids Res       Date:  1994-06-25       Impact factor: 16.971

7.  An NMR study of the exchange rates for protons involved in the secondary and tertiary structure of yeast tRNA Phe.

Authors:  P D Johnston; A G Redfield
Journal:  Nucleic Acids Res       Date:  1977-10       Impact factor: 16.971

Review 8.  Electrospray ionization mass spectrometry of oligonucleotide complexes with drugs, metals, and proteins.

Authors:  J L Beck; M L Colgrave; S F Ralph; M M Sheil
Journal:  Mass Spectrom Rev       Date:  2001 Mar-Apr       Impact factor: 10.946

Review 9.  Contributions of mass spectrometry in the study of nucleic acid-binding proteins and of nucleic acid-protein interactions.

Authors:  Filippo Rusconi; François Guillonneau; Danièle Praseuth
Journal:  Mass Spectrom Rev       Date:  2002 Sep-Oct       Impact factor: 10.946

10.  Noncovalent probes for the investigation of structure and dynamics of protein-nucleic acid assemblies: the case of NC-mediated dimerization of genomic RNA in HIV-1.

Authors:  Kevin B Turner; Andrew S Kohlway; Nathan A Hagan; Daniele Fabris
Journal:  Biopolymers       Date:  2009-04       Impact factor: 2.505

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  6 in total

1.  Bifunctional cross-linking approaches for mass spectrometry-based investigation of nucleic acids and protein-nucleic acid assemblies.

Authors:  M Scalabrin; S M Dixit; M M Makshood; C E Krzemien; Daniele Fabris
Journal:  Methods       Date:  2018-05-10       Impact factor: 3.608

2.  Submicrometer Nanospray Emitters Provide New Insights into the Mechanism of Cation Adduction to Anionic Oligonucleotides.

Authors:  Thomas Kenderdine; Zijie Xia; Evan R Williams; Daniele Fabris
Journal:  Anal Chem       Date:  2018-11-05       Impact factor: 6.986

3.  Positive-sense RNA viruses reveal the complexity and dynamics of the cellular and viral epitranscriptomes during infection.

Authors:  Will McIntyre; Rachel Netzband; Gaston Bonenfant; Jason M Biegel; Clare Miller; Gabriele Fuchs; Eric Henderson; Manoj Arra; Mario Canki; Daniele Fabris; Cara T Pager
Journal:  Nucleic Acids Res       Date:  2018-06-20       Impact factor: 16.971

4.  The essential role of stacking adenines in a two-base-pair RNA kissing complex.

Authors:  William Stephenson; Papa Nii Asare-Okai; Alan A Chen; Sean Keller; Rachel Santiago; Scott A Tenenbaum; Angel E Garcia; Daniele Fabris; Pan T X Li
Journal:  J Am Chem Soc       Date:  2013-04-08       Impact factor: 15.419

5.  Relative Strength of Noncovalent Interactions and Covalent Backbone Bonds in Gaseous RNA-Peptide Complexes.

Authors:  Jovana Vušurović; Kathrin Breuker
Journal:  Anal Chem       Date:  2019-01-07       Impact factor: 6.986

Review 6.  May the Best Molecule Win: Competition ESI Mass Spectrometry.

Authors:  Sarah Laughlin; W David Wilson
Journal:  Int J Mol Sci       Date:  2015-10-15       Impact factor: 5.923

  6 in total

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