Literature DB >> 21647532

Fishing for function: zebrafish BAC transgenics for functional genomics.

Sumantra Chatterjee1, Thomas Lufkin.   

Abstract

Transgenics using bacterial artificial chromosomes (BACs) offers a great opportunity to look at gene regulation in a developing embryo. The modified BAC containing a reporter inserted just before the translational start site of the gene of interest allows for the visualization of spatio-temporal gene expression. Though this method has been used in the mouse model extensively, its utility in zebrafish studies is relatively new. This review aims to look at the utility of making BAC transgenics in zebrafish and its applications in functional genomics. We look at the various methods to modify the BAC, some limitations and what the future holds.

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Year:  2011        PMID: 21647532      PMCID: PMC3358332          DOI: 10.1039/c1mb05116d

Source DB:  PubMed          Journal:  Mol Biosyst        ISSN: 1742-2051


  59 in total

1.  Tol2 transposon-mediated enhancer trap to identify developmentally regulated zebrafish genes in vivo.

Authors:  Serguei Parinov; Igor Kondrichin; Vladimir Korzh; Alexander Emelyanov
Journal:  Dev Dyn       Date:  2004-10       Impact factor: 3.780

2.  Repeat-induced gene silencing in mammals.

Authors:  D Garrick; S Fiering; D I Martin; E Whitelaw
Journal:  Nat Genet       Date:  1998-01       Impact factor: 38.330

3.  Transgene repeat arrays interact with distant heterochromatin and cause silencing in cis and trans.

Authors:  D R Dorer; S Henikoff
Journal:  Genetics       Date:  1997-11       Impact factor: 4.562

4.  Activator effect of coinjected enhancers on the muscle-specific expression of promoters in zebrafish embryos.

Authors:  F Müller; D W Williams; J Kobolák; L Gauvry; G Goldspink; L Orbán; N Maclean
Journal:  Mol Reprod Dev       Date:  1997-08       Impact factor: 2.609

5.  TRANSFAC: a database on transcription factors and their DNA binding sites.

Authors:  E Wingender; P Dietze; H Karas; R Knüppel
Journal:  Nucleic Acids Res       Date:  1996-01-01       Impact factor: 16.971

6.  Osteoblast-specific expression of the alpha 2(I) collagen promoter in transgenic mice: correlation with the distribution of TGF-beta 1.

Authors:  R N D'Souza; K Niederreither; B de Crombrugghe
Journal:  J Bone Miner Res       Date:  1993-09       Impact factor: 6.741

7.  Identification of three transcriptional regulatory elements in the rat mitochondrial benzodiazepine receptor-encoding gene.

Authors:  A Oberto; P Longone; K E Krueger
Journal:  Gene       Date:  1995-12-29       Impact factor: 3.688

8.  GATA-1 expression pattern can be recapitulated in living transgenic zebrafish using GFP reporter gene.

Authors:  Q Long; A Meng; H Wang; J R Jessen; M J Farrell; S Lin
Journal:  Development       Date:  1997-10       Impact factor: 6.868

9.  Vascular endothelial cell lineage-specific promoter in transgenic mice.

Authors:  T M Schlaeger; Y Qin; Y Fujiwara; J Magram; T N Sato
Journal:  Development       Date:  1995-04       Impact factor: 6.868

10.  Expression of the SM22alpha promoter in transgenic mice provides evidence for distinct transcriptional regulatory programs in vascular and visceral smooth muscle cells.

Authors:  L Li; J M Miano; B Mercer; E N Olson
Journal:  J Cell Biol       Date:  1996-03       Impact factor: 10.539

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  5 in total

1.  Identification of amacrine subtypes that express the atypical cadherin celsr3.

Authors:  Alaron A Lewis; Joseph T Mahoney; Neil Wilson; Susan E Brockerhoff
Journal:  Exp Eye Res       Date:  2014-12-03       Impact factor: 3.467

2.  Identifying Distal cis-acting Gene-Regulatory Sequences by Expressing BACs Functionalized with loxP-Tn10 Transposons in Zebrafish.

Authors:  Pradeep K Chatterjee; Leighcraft A Shakes; Hope M Wolf; Mohammad A Mujalled; Constance Zhou; Charles Hatcher; Derek C Norford
Journal:  RSC Adv       Date:  2013-06-21       Impact factor: 3.361

3.  Regulatory genomics: Insights from the zebrafish.

Authors:  Sumantra Chatterjee; Thomas Lufkin
Journal:  Curr Top Genet       Date:  2012

4.  Conserved and non-conserved enhancers direct tissue specific transcription in ancient germ layer specific developmental control genes.

Authors:  Sumantra Chatterjee; Guillaume Bourque; Thomas Lufkin
Journal:  BMC Dev Biol       Date:  2011-10-20       Impact factor: 1.978

Review 5.  Imaging Myelination In Vivo Using Transparent Animal Models.

Authors:  Jenea M Bin; David A Lyons
Journal:  Brain Plast       Date:  2016-12-21
  5 in total

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