Literature DB >> 21642005

Clustering method for estimating principal diffusion directions.

Mohammad-Reza Nazem-Zadeh1, Kourosh Jafari-Khouzani, Esmaeil Davoodi-Bojd, Quan Jiang, Hamid Soltanian-Zadeh.   

Abstract

Diffusion tensor magnetic resonance imaging (DTMRI) is a non-invasive tool for the investigation of white matter structure within the brain. However, the traditional tensor model is unable to characterize anisotropies of orders higher than two in heterogeneous areas containing more than one fiber population. To resolve this issue, high angular resolution diffusion imaging (HARDI) with a large number of diffusion encoding gradients is used along with reconstruction methods such as Q-ball. Using HARDI data, the fiber orientation distribution function (ODF) on the unit sphere is calculated and used to extract the principal diffusion directions (PDDs). Fast and accurate estimation of PDDs is a prerequisite for tracking algorithms that deal with fiber crossings. In this paper, the PDDs are defined as the directions around which the ODF data is concentrated. Estimates of the PDDs based on this definition are less sensitive to noise in comparison with the previous approaches. A clustering approach to estimate the PDDs is proposed which is an extension of fuzzy c-means clustering developed for orientation of points on a sphere. MDL (Minimum description length) principle is proposed to estimate the number of PDDs. Using both simulated and real diffusion data, the proposed method has been evaluated and compared with some previous protocols. Experimental results show that the proposed clustering algorithm is more accurate, more resistant to noise, and faster than some of techniques currently being utilized.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21642005      PMCID: PMC3390936          DOI: 10.1016/j.neuroimage.2011.05.056

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  20 in total

Review 1.  Fiber tracking: principles and strategies - a technical review.

Authors:  Susumu Mori; Peter C M van Zijl
Journal:  NMR Biomed       Date:  2002 Nov-Dec       Impact factor: 4.044

2.  Persistent Angular Structure: new insights from diffusion MRI data. Dummy version.

Authors:  Kalvis M Jansons; Daniel C Alexander
Journal:  Inf Process Med Imaging       Date:  2003-07

3.  Atlas-based fiber bundle segmentation using principal diffusion directions and spherical harmonic coefficients.

Authors:  Mohammad-Reza Nazem-Zadeh; Esmaeil Davoodi-Bojd; Hamid Soltanian-Zadeh
Journal:  Neuroimage       Date:  2010-09-30       Impact factor: 6.556

4.  Q-ball imaging.

Authors:  David S Tuch
Journal:  Magn Reson Med       Date:  2004-12       Impact factor: 4.668

5.  Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution.

Authors:  J-Donald Tournier; Fernando Calamante; David G Gadian; Alan Connelly
Journal:  Neuroimage       Date:  2004-11       Impact factor: 6.556

6.  Apparent diffusion coefficients from high angular resolution diffusion imaging: estimation and applications.

Authors:  Maxime Descoteaux; Elaine Angelino; Shaun Fitzgibbons; Rachid Deriche
Journal:  Magn Reson Med       Date:  2006-08       Impact factor: 4.668

7.  Q-ball reconstruction of multimodal fiber orientations using the spherical harmonic basis.

Authors:  Christopher P Hess; Pratik Mukherjee; Eric T Han; Duan Xu; Daniel B Vigneron
Journal:  Magn Reson Med       Date:  2006-07       Impact factor: 4.668

8.  MR diffusion tensor spectroscopy and imaging.

Authors:  P J Basser; J Mattiello; D LeBihan
Journal:  Biophys J       Date:  1994-01       Impact factor: 4.033

9.  Estimation of the effective self-diffusion tensor from the NMR spin echo.

Authors:  P J Basser; J Mattiello; D LeBihan
Journal:  J Magn Reson B       Date:  1994-03

10.  Detection and modeling of non-Gaussian apparent diffusion coefficient profiles in human brain data.

Authors:  D C Alexander; G J Barker; S R Arridge
Journal:  Magn Reson Med       Date:  2002-08       Impact factor: 4.668

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  2 in total

1.  Radiation therapy effects on white matter fiber tracts of the limbic circuit.

Authors:  Mohammad-Reza Nazem-Zadeh; Christopher H Chapman; Theodore L Lawrence; Christina I Tsien; Yue Cao
Journal:  Med Phys       Date:  2012-09       Impact factor: 4.071

2.  Computational representation of white matter fiber orientations.

Authors:  Adelino R Ferreira da Silva
Journal:  Int J Biomed Imaging       Date:  2013-08-20
  2 in total

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